10 20 30 40 50 60 70 80 2CPD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 19-MAY-05 2CPD
TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF HUMAN TITLE 2 APOBEC-1 COMPLEMENTATION FACTOR, ACF
COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOBEC-1 STIMULATING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: APOBEC-1 COMPLEMENTATION FACTOR ISOFORM 1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040531-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNP, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2CPD 1 VERSN REVDAT 1 19-NOV-05 2CPD 0
JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF JRNL TITL 2 HUMAN APOBEC-1 COMPLEMENTATION FACTOR, ACF JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2CPD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024476.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.01MM 13C/15N-PROTEIN; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801/20031121, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.925, CYANA REMARK 210 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 237 44.28 73.83 REMARK 500 1 ARG A 266 -70.90 -31.86 REMARK 500 1 ASN A 287 104.72 -37.10 REMARK 500 1 ASP A 292 28.91 37.73 REMARK 500 2 GLU A 224 102.94 -58.16 REMARK 500 2 ARG A 266 -72.04 -31.51 REMARK 500 2 ASN A 287 108.70 -48.80 REMARK 500 2 ASP A 292 24.96 44.97 REMARK 500 2 PRO A 295 93.94 -69.72 REMARK 500 2 ASP A 307 105.22 -59.20 REMARK 500 3 THR A 226 45.30 -83.34 REMARK 500 3 ASN A 237 52.62 70.68 REMARK 500 3 ARG A 266 -73.28 -30.66 REMARK 500 3 ASN A 287 93.79 -36.74 REMARK 500 3 PRO A 311 91.61 -69.75 REMARK 500 3 SER A 313 176.96 -58.08 REMARK 500 4 ASN A 237 47.95 71.92 REMARK 500 4 ARG A 266 -72.77 -31.11 REMARK 500 4 ASN A 287 121.14 -39.87 REMARK 500 4 SER A 309 108.31 -37.32 REMARK 500 5 SER A 218 153.14 -46.74 REMARK 500 5 ASN A 237 35.84 71.26 REMARK 500 5 ARG A 266 -75.37 -28.66 REMARK 500 5 ASP A 292 26.51 41.86 REMARK 500 5 PRO A 295 91.93 -69.76 REMARK 500 6 ASN A 237 53.97 72.90 REMARK 500 6 ARG A 266 -70.25 -30.89 REMARK 500 6 ASN A 287 91.82 -49.52 REMARK 500 6 ASP A 292 36.28 34.94 REMARK 500 7 ASP A 223 104.60 -50.01 REMARK 500 7 SER A 229 99.35 -65.66 REMARK 500 7 ASN A 237 51.23 71.88 REMARK 500 7 ARG A 266 -71.98 -32.01 REMARK 500 7 ASN A 287 95.96 -41.15 REMARK 500 7 ASP A 292 24.97 41.92 REMARK 500 8 SER A 218 42.08 37.85 REMARK 500 8 ASP A 223 120.58 -172.17 REMARK 500 8 GLU A 260 -64.33 -96.89 REMARK 500 8 ARG A 266 -68.09 -29.40 REMARK 500 8 ASN A 287 97.96 -36.29 REMARK 500 8 ASP A 292 29.25 39.62 REMARK 500 8 PRO A 295 94.78 -69.76 REMARK 500 8 LYS A 306 117.14 -171.75 REMARK 500 8 PRO A 311 -175.28 -69.73 REMARK 500 9 ASP A 225 97.19 -50.22 REMARK 500 9 ASN A 237 54.00 71.80 REMARK 500 9 ARG A 266 -72.23 -31.78 REMARK 500 9 ASN A 287 99.95 -38.28 REMARK 500 9 ASP A 292 25.20 42.15 REMARK 500 9 PRO A 295 92.00 -69.78 REMARK 500 9 ASP A 307 122.77 -39.41 REMARK 500 10 SER A 220 40.53 -91.93 REMARK 500 10 ASN A 237 38.79 71.79 REMARK 500 10 ARG A 266 -72.08 -31.71 REMARK 500 10 ASN A 287 99.50 -41.93 REMARK 500 10 ASP A 292 34.38 35.43 REMARK 500 10 ASP A 305 119.11 -172.04 REMARK 500 10 SER A 309 152.16 -37.61 REMARK 500 10 PRO A 311 89.51 -69.81 REMARK 500 11 SER A 217 111.76 -163.75 REMARK 500 11 ASP A 225 89.64 -57.65 REMARK 500 11 ARG A 266 -73.09 -30.77 REMARK 500 11 ASN A 287 106.12 -55.99 REMARK 500 11 ASP A 292 40.33 36.30 REMARK 500 11 SER A 309 56.87 -90.54 REMARK 500 12 ARG A 266 -75.10 -31.32 REMARK 500 12 ASP A 292 28.31 40.96 REMARK 500 13 SER A 228 79.94 -106.57 REMARK 500 13 SER A 229 103.01 -56.71 REMARK 500 13 ASN A 237 35.22 74.87 REMARK 500 13 ARG A 266 -71.52 -31.32 REMARK 500 13 ASN A 287 109.29 -35.99 REMARK 500 13 ASP A 292 24.93 42.97 REMARK 500 13 PRO A 295 92.78 -69.76 REMARK 500 13 ASP A 305 114.21 -36.15 REMARK 500 14 ARG A 266 -73.56 -31.34 REMARK 500 14 ASN A 287 103.78 -36.88 REMARK 500 14 ASP A 292 39.03 37.48 REMARK 500 15 GLU A 260 -62.02 -100.08 REMARK 500 15 ARG A 266 -72.73 -31.55 REMARK 500 15 ASN A 287 95.64 -42.53 REMARK 500 15 ASP A 292 29.16 42.53 REMARK 500 15 PRO A 295 98.56 -69.78 REMARK 500 15 ASP A 305 141.04 -34.42 REMARK 500 15 LYS A 306 117.04 -172.76 REMARK 500 15 ASP A 307 137.43 -35.09 REMARK 500 16 SER A 229 98.53 -62.51 REMARK 500 16 ASN A 237 39.97 72.16 REMARK 500 16 ARG A 266 -72.36 -31.39 REMARK 500 16 ASN A 287 109.55 -57.01 REMARK 500 16 ASP A 292 25.69 41.77 REMARK 500 16 PRO A 295 97.45 -69.73 REMARK 500 16 ASP A 307 99.04 -38.06 REMARK 500 16 SER A 312 161.08 -40.79 REMARK 500 17 ASN A 237 48.35 71.55 REMARK 500 17 GLU A 260 -61.79 -102.94 REMARK 500 17 ARG A 266 -74.73 -31.34 REMARK 500 17 ASN A 287 96.65 -48.67 REMARK 500 17 ASP A 292 26.62 41.83 REMARK 500 17 SER A 309 42.37 38.20 REMARK 500 18 SER A 229 104.05 -59.73 REMARK 500 18 ASN A 237 48.07 70.91 REMARK 500 18 GLU A 245 -39.20 -37.95 REMARK 500 18 ARG A 266 -73.38 -30.10 REMARK 500 18 ASN A 287 106.55 -41.81 REMARK 500 18 ASP A 292 25.00 41.88 REMARK 500 18 PRO A 295 86.19 -69.80 REMARK 500 18 SER A 313 159.22 -39.15 REMARK 500 19 ASP A 225 109.17 -59.86 REMARK 500 19 ARG A 266 -72.51 -31.96 REMARK 500 19 ASN A 287 113.43 -36.30 REMARK 500 19 ASP A 292 28.36 39.59 REMARK 500 19 PRO A 295 99.19 -69.81 REMARK 500 20 SER A 218 43.42 34.73 REMARK 500 20 GLU A 248 -34.40 -39.55 REMARK 500 20 ARG A 266 -72.42 -30.17 REMARK 500 20 ASN A 287 104.61 -40.31 REMARK 500 20 ASP A 292 26.71 42.33 REMARK 500 20 ASP A 307 80.41 -66.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001710.1 RELATED DB: TARGETDB
DBREF 2CPD A 223 308 UNP Q9NQ93 Q9NQ93_HUMAN 223 308
SEQADV 2CPD GLY A 216 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 217 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 218 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 219 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 220 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 221 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 222 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 309 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 310 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD PRO A 311 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 312 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 313 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 314 UNP Q9NQ93 CLONING ARTIFACT
SEQRES 1 A 99 GLY SER SER GLY SER SER GLY ASP GLU ASP THR MET SER SEQRES 2 A 99 SER VAL LYS ILE LEU TYR VAL ARG ASN LEU MET LEU SER SEQRES 3 A 99 THR SER GLU GLU MET ILE GLU LYS GLU PHE ASN ASN ILE SEQRES 4 A 99 LYS PRO GLY ALA VAL GLU ARG VAL LYS LYS ILE ARG ASP SEQRES 5 A 99 TYR ALA PHE VAL HIS PHE SER ASN ARG GLU ASP ALA VAL SEQRES 6 A 99 GLU ALA MET LYS ALA LEU ASN GLY LYS VAL LEU ASP GLY SEQRES 7 A 99 SER PRO ILE GLU VAL THR LEU ALA LYS PRO VAL ASP LYS SEQRES 8 A 99 ASP SER SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 244 ASN A 252 1 9 HELIX 2 2 ARG A 276 LEU A 286 1 11
SHEET 1 A 6 VAL A 259 LYS A 264 0 SHEET 2 A 6 TYR A 268 PHE A 273 -1 SHEET 3 A 6 ILE A 232 ARG A 236 -1 SHEET 4 A 6 SER A 294 PRO A 295 -1 SHEET 5 A 6 GLU A 297 THR A 299 1 SHEET 6 A 6 VAL A 290 LEU A 291 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000