10 20 30 40 50 60 70 80 2COR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 18-MAY-05 2COR
TITLE SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF PARTICULARLY TITLE 2 INTERESTING NEW CYS-HIS PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PINCH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 SYNONYM: PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN, LIM COMPND 6 AND SENESCENT CELL ANTIGEN-LIKE DOMAINS 1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIMS1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040727-07; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS LIM DOMAIN, PINCH PROTEIN, PARTICULARLY INTERESTING NEW CYS- KEYWDS 2 HIS PROTEIN, LIM AND SENESCENT CELL ANTIGEN-LIKE DOMAINS 1, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2COR 1 VERSN REVDAT 1 18-NOV-05 2COR 0
JRNL AUTH X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF JRNL TITL 2 PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2COR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024459.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.39MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 0.05MM ZNCL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY, REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 24 145.45 -36.31 REMARK 500 1 ILE A 25 71.25 -115.08 REMARK 500 1 CYS A 44 163.49 -48.24 REMARK 500 1 LEU A 51 178.57 -54.50 REMARK 500 2 PRO A 39 2.87 -69.73 REMARK 500 2 CYS A 44 158.90 -47.63 REMARK 500 2 VAL A 73 39.18 -82.12 REMARK 500 3 SER A 2 140.13 -170.30 REMARK 500 3 SER A 5 41.66 35.73 REMARK 500 3 ALA A 10 133.34 -172.86 REMARK 500 3 LYS A 20 -51.95 -130.49 REMARK 500 3 PRO A 39 2.97 -69.73 REMARK 500 3 LEU A 51 174.66 -54.67 REMARK 500 3 ALA A 55 176.25 -47.72 REMARK 500 4 SER A 3 138.22 -171.85 REMARK 500 4 LYS A 20 -51.90 -129.07 REMARK 500 4 ASP A 26 -70.36 -50.17 REMARK 500 4 PRO A 39 1.35 -69.81 REMARK 500 4 CYS A 44 156.02 -47.90 REMARK 500 4 LEU A 51 171.02 -51.65 REMARK 500 4 ALA A 55 151.44 -35.63 REMARK 500 4 SER A 77 98.89 -63.95 REMARK 500 5 LYS A 9 43.79 -84.11 REMARK 500 5 ILE A 24 148.99 -38.10 REMARK 500 5 ILE A 25 72.31 -118.66 REMARK 500 5 PRO A 39 2.48 -69.74 REMARK 500 5 LEU A 51 175.05 -57.69 REMARK 500 5 VAL A 73 155.78 -41.43 REMARK 500 5 SER A 74 99.18 -44.48 REMARK 500 6 LYS A 20 -54.39 -126.31 REMARK 500 6 PHE A 32 118.43 -165.71 REMARK 500 6 PRO A 39 2.79 -69.78 REMARK 500 6 CYS A 44 153.88 -46.81 REMARK 500 6 LEU A 51 174.41 -48.81 REMARK 500 6 HIS A 68 -35.86 -37.75 REMARK 500 6 SER A 78 135.06 -36.92 REMARK 500 7 ALA A 10 111.96 -169.88 REMARK 500 7 LYS A 20 -52.61 -120.20 REMARK 500 7 ASN A 34 47.91 70.59 REMARK 500 7 PRO A 39 1.00 -69.76 REMARK 500 7 CYS A 44 160.63 -45.95 REMARK 500 7 LEU A 51 173.46 -50.17 REMARK 500 8 SER A 2 113.67 -167.48 REMARK 500 8 LEU A 13 107.15 -51.03 REMARK 500 8 LYS A 20 -50.33 -128.16 REMARK 500 8 PHE A 32 113.04 -162.00 REMARK 500 8 PRO A 39 3.18 -69.79 REMARK 500 8 CYS A 44 163.60 -49.23 REMARK 500 8 LEU A 51 175.36 -49.69 REMARK 500 8 ALA A 55 150.24 -42.36 REMARK 500 8 LYS A 59 38.72 38.91 REMARK 500 9 ILE A 24 149.48 -37.14 REMARK 500 9 ASN A 34 48.34 70.08 REMARK 500 9 PRO A 39 1.91 -69.82 REMARK 500 9 CYS A 44 161.05 -47.16 REMARK 500 9 LEU A 51 175.42 -50.65 REMARK 500 9 ALA A 55 173.67 -48.15 REMARK 500 9 MET A 71 39.80 -81.27 REMARK 500 9 PRO A 76 8.58 -69.69 REMARK 500 9 SER A 77 133.96 -33.53 REMARK 500 9 SER A 78 144.49 -36.79 REMARK 500 10 ASN A 34 48.50 70.45 REMARK 500 10 PRO A 39 1.14 -69.73 REMARK 500 10 LEU A 51 176.87 -57.00 REMARK 500 10 SER A 77 -57.32 -121.77 REMARK 500 10 SER A 78 131.66 -37.09 REMARK 500 11 SER A 3 105.68 -49.38 REMARK 500 11 SER A 6 42.87 -81.18 REMARK 500 11 ILE A 24 145.70 -36.96 REMARK 500 11 CYS A 44 157.74 -45.11 REMARK 500 11 LEU A 51 173.16 -50.81 REMARK 500 11 ALA A 55 160.49 -44.17 REMARK 500 12 LEU A 13 113.08 -174.88 REMARK 500 12 ILE A 24 144.58 -39.68 REMARK 500 12 ILE A 25 72.51 -113.04 REMARK 500 12 CYS A 44 162.38 -40.84 REMARK 500 12 LEU A 51 179.20 -54.36 REMARK 500 12 PRO A 76 1.70 -69.77 REMARK 500 13 ILE A 24 149.24 -37.86 REMARK 500 13 CYS A 44 164.95 -43.87 REMARK 500 13 LEU A 51 174.10 -49.56 REMARK 500 13 VAL A 73 172.25 -45.62 REMARK 500 13 SER A 74 133.78 -34.47 REMARK 500 13 PRO A 76 88.70 -69.72 REMARK 500 14 LYS A 20 -61.79 -102.97 REMARK 500 14 PRO A 39 1.60 -69.67 REMARK 500 14 CYS A 44 163.67 -44.77 REMARK 500 14 GLU A 50 102.82 -59.70 REMARK 500 14 LEU A 51 177.01 -49.93 REMARK 500 14 PRO A 76 90.19 -69.72 REMARK 500 15 LYS A 20 -53.54 -126.49 REMARK 500 15 GLU A 27 -179.77 -69.67 REMARK 500 15 PRO A 39 1.92 -69.70 REMARK 500 15 CYS A 44 162.68 -43.74 REMARK 500 15 GLU A 50 104.48 -58.41 REMARK 500 15 LEU A 51 177.32 -51.25 REMARK 500 16 SER A 2 47.15 -81.59 REMARK 500 16 LYS A 20 -53.17 -121.10 REMARK 500 16 ILE A 25 78.58 -114.45 REMARK 500 16 PRO A 39 3.66 -69.78 REMARK 500 16 CYS A 44 155.57 -43.52 REMARK 500 16 LEU A 51 173.35 -48.51 REMARK 500 16 PRO A 76 -174.24 -69.76 REMARK 500 17 ALA A 10 125.89 -170.71 REMARK 500 17 ILE A 24 152.47 -35.00 REMARK 500 17 ILE A 25 78.59 -117.00 REMARK 500 17 PRO A 39 2.98 -69.78 REMARK 500 17 CYS A 44 157.77 -45.72 REMARK 500 17 LEU A 51 174.64 -51.30 REMARK 500 17 PRO A 76 84.88 -69.76 REMARK 500 18 ILE A 25 74.95 -111.17 REMARK 500 18 PRO A 39 1.32 -69.78 REMARK 500 18 GLU A 50 108.13 -56.95 REMARK 500 18 LEU A 51 177.73 -54.87 REMARK 500 18 MET A 71 -39.42 -38.98 REMARK 500 18 SER A 74 49.76 38.37 REMARK 500 18 PRO A 76 10.54 -69.75 REMARK 500 18 SER A 77 130.81 -30.79 REMARK 500 19 LYS A 20 -61.64 -104.62 REMARK 500 19 CYS A 44 163.11 -42.85 REMARK 500 19 GLU A 50 102.77 -58.60 REMARK 500 19 LEU A 51 174.96 -51.78 REMARK 500 19 ALA A 55 177.32 -55.23 REMARK 500 20 ILE A 24 144.63 -37.23 REMARK 500 20 GLU A 27 -177.23 -65.49 REMARK 500 20 CYS A 44 161.37 -42.94 REMARK 500 20 LEU A 51 172.34 -53.81 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 111.9 REMARK 620 3 HIS A 38 ND1 96.4 94.5 REMARK 620 4 HIS A 41 NE2 130.3 104.7 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 44 SG REMARK 620 2 CYS A 47 SG 101.2 REMARK 620 3 CYS A 64 SG 116.2 117.9 REMARK 620 4 CYS A 67 SG 103.5 101.4 114.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001107.1 RELATED DB: TARGETDB
DBREF 2COR A 8 73 UNP P48059 PINC_HUMAN 125 190
SEQADV 2COR GLY A 1 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 2 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 3 UNP P48059 CLONING ARTIFACT SEQADV 2COR GLY A 4 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 5 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 6 UNP P48059 CLONING ARTIFACT SEQADV 2COR GLY A 7 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 74 UNP P48059 CLONING ARTIFACT SEQADV 2COR GLY A 75 UNP P48059 CLONING ARTIFACT SEQADV 2COR PRO A 76 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 77 UNP P48059 CLONING ARTIFACT SEQADV 2COR SER A 78 UNP P48059 CLONING ARTIFACT SEQADV 2COR GLY A 79 UNP P48059 CLONING ARTIFACT
SEQRES 1 A 79 GLY SER SER GLY SER SER GLY GLU LYS ALA ARG GLY LEU SEQRES 2 A 79 GLY LYS TYR ILE CYS GLN LYS CYS HIS ALA ILE ILE ASP SEQRES 3 A 79 GLU GLN PRO LEU ILE PHE LYS ASN ASP PRO TYR HIS PRO SEQRES 4 A 79 ASP HIS PHE ASN CYS ALA ASN CYS GLY LYS GLU LEU THR SEQRES 5 A 79 ALA ASP ALA ARG GLU LEU LYS GLY GLU LEU TYR CYS LEU SEQRES 6 A 79 PRO CYS HIS ASP LYS MET GLY VAL SER GLY PRO SER SER SEQRES 7 A 79 GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 CYS A 64 LYS A 70 1 7
SHEET 1 A 6 ILE A 24 ILE A 25 0 SHEET 2 A 6 TYR A 16 ILE A 17 -1 SHEET 3 A 6 PRO A 36 TYR A 37 1 SHEET 4 A 6 LEU A 30 ILE A 31 1 SHEET 5 A 6 ARG A 56 LEU A 58 1 SHEET 6 A 6 GLU A 61 TYR A 63 -1 O TYR A 63 N ARG A 56
LINK ZN ZN A 201 SG CYS A 18 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.36 LINK ZN ZN A 201 ND1 HIS A 38 1555 1555 2.07 LINK ZN ZN A 201 NE2 HIS A 41 1555 1555 2.06 LINK ZN ZN A 401 SG CYS A 44 1555 1555 2.37 LINK ZN ZN A 401 SG CYS A 47 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 64 1555 1555 2.34 LINK ZN ZN A 401 SG CYS A 67 1555 1555 2.37
SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 38 HIS A 41 SITE 1 AC2 4 CYS A 44 CYS A 47 CYS A 64 CYS A 67
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000