10 20 30 40 50 60 70 80 2COO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 18-MAY-05 2COO
TITLE SOLUTION STRUCTURE OF THE E3_BINDING DOMAIN OF TITLE 2 DIHYDROLIPOAMIDE BRANCHED CHAINTRANSACYLASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOAMIDE ACYLTRANSFERASE COMPONENT OF BRANCHED- COMPND 3 CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX, MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: E3_BINDING DOMAIN; COMPND 6 SYNONYM: DIHYDROLIPOYLLYSINE-RESIDUE 2-METHYLPROPANOYL, COMPND 7 TRANSFERASE, E2, DIHYDROLIPOAMIDE BRANCHED CHAIN COMPND 8 TRANSACYLASE, BCKAD E2 SUBUNIT; COMPND 9 EC: 2.3.1.168; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DBT, BCATE2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040510-10; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS E3_BINDING DOMAIN, LIPOAMIDE ACYLTRANSFERASE COMPONENT OF KEYWDS 2 BRANCHED-CHAIN ALPHA-KETO ACID, DIHYDROLIPOYLLYSINE-RESIDUE KEYWDS 3 (2-METHYLPROPANOYL)TRANSFERASE, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 4 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 5 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 6 RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.P.ZHANG,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2COO 1 VERSN REVDAT 1 18-NOV-05 2COO 0
JRNL AUTH H.P.ZHANG,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE E3_BINDING DOMAIN OF JRNL TITL 2 DIHYDROLIPOAMIDE BRANCHED CHAINTRANSACYLASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2COO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024456.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL REMARK 210 (PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.04, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 12 161.17 -41.63 REMARK 500 1 VAL A 37 101.58 -58.21 REMARK 500 1 SER A 65 39.59 37.02 REMARK 500 2 ALA A 18 149.32 -175.04 REMARK 500 2 ASP A 42 31.71 -86.73 REMARK 500 2 ILE A 61 38.42 -82.41 REMARK 500 2 SER A 68 -70.92 -34.63 REMARK 500 3 ALA A 18 144.86 -170.83 REMARK 500 3 SER A 65 151.43 -47.50 REMARK 500 4 HIS A 8 40.27 -85.28 REMARK 500 4 ALA A 18 136.84 -174.57 REMARK 500 4 THR A 19 160.63 -47.27 REMARK 500 4 ASP A 42 47.03 -80.30 REMARK 500 4 SER A 65 89.12 -60.22 REMARK 500 5 LEU A 25 -19.06 -48.61 REMARK 500 5 VAL A 37 98.30 -66.84 REMARK 500 5 THR A 58 113.39 -34.20 REMARK 500 5 ALA A 60 97.46 -49.41 REMARK 500 5 ILE A 61 49.09 36.98 REMARK 500 5 PRO A 67 90.37 -69.79 REMARK 500 6 ILE A 11 149.96 -37.18 REMARK 500 6 VAL A 37 96.95 -54.77 REMARK 500 6 ALA A 60 96.97 -50.87 REMARK 500 6 PRO A 64 -175.28 -69.76 REMARK 500 7 VAL A 37 97.83 -61.20 REMARK 500 7 ASP A 42 31.95 -84.68 REMARK 500 7 ARG A 44 108.22 -53.12 REMARK 500 7 THR A 58 128.05 -34.56 REMARK 500 7 ILE A 61 40.45 -105.65 REMARK 500 7 SER A 69 106.44 -169.52 REMARK 500 8 ALA A 18 149.92 -175.04 REMARK 500 8 LEU A 25 -19.14 -49.14 REMARK 500 8 THR A 58 -31.49 -35.29 REMARK 500 8 PRO A 64 0.75 -69.78 REMARK 500 8 SER A 65 -39.80 -38.71 REMARK 500 9 SER A 5 117.88 -163.02 REMARK 500 9 THR A 19 160.77 -44.81 REMARK 500 9 LYS A 41 -70.56 -36.52 REMARK 500 9 SER A 65 118.43 -38.87 REMARK 500 10 SER A 3 -53.26 -129.28 REMARK 500 10 HIS A 8 148.23 -170.93 REMARK 500 10 GLN A 9 106.24 -167.06 REMARK 500 10 ALA A 60 -176.25 -56.94 REMARK 500 11 SER A 5 107.13 -170.64 REMARK 500 11 LEU A 25 -30.08 -36.22 REMARK 500 11 VAL A 36 97.54 -69.66 REMARK 500 11 VAL A 37 104.29 -54.80 REMARK 500 11 ASP A 42 47.74 -80.88 REMARK 500 11 PRO A 64 95.53 -69.76 REMARK 500 11 SER A 65 104.33 -35.05 REMARK 500 12 SER A 2 43.60 38.87 REMARK 500 12 SER A 5 158.46 -44.60 REMARK 500 12 LYS A 12 41.72 -99.37 REMARK 500 12 ALA A 18 138.99 -173.53 REMARK 500 12 THR A 19 160.64 -42.13 REMARK 500 12 LYS A 41 148.80 -36.15 REMARK 500 12 LYS A 47 -39.02 -35.65 REMARK 500 12 LEU A 62 152.03 -48.06 REMARK 500 13 SER A 39 -38.88 -132.92 REMARK 500 13 ASP A 42 32.49 -84.62 REMARK 500 13 THR A 58 34.07 33.98 REMARK 500 13 ALA A 60 165.90 -47.69 REMARK 500 13 ILE A 61 74.91 -61.96 REMARK 500 14 VAL A 37 102.61 -54.66 REMARK 500 14 ASP A 42 45.83 -78.94 REMARK 500 14 ALA A 60 154.81 -44.46 REMARK 500 14 PRO A 64 82.43 -69.74 REMARK 500 14 PRO A 67 92.88 -69.83 REMARK 500 15 ALA A 18 123.10 -174.84 REMARK 500 15 THR A 19 160.87 -39.71 REMARK 500 15 ILE A 61 52.75 -91.10 REMARK 500 15 PRO A 67 2.78 -69.73 REMARK 500 15 SER A 68 50.82 38.95 REMARK 500 16 GLN A 9 68.67 -116.51 REMARK 500 16 ALA A 18 143.04 -175.15 REMARK 500 16 THR A 58 38.91 34.08 REMARK 500 16 ALA A 60 153.52 -38.80 REMARK 500 17 GLU A 10 123.11 -173.85 REMARK 500 17 LYS A 15 95.37 -69.06 REMARK 500 17 VAL A 37 96.96 -69.14 REMARK 500 17 ASP A 42 37.43 -83.88 REMARK 500 17 ILE A 61 43.03 32.54 REMARK 500 18 LEU A 25 -19.41 -47.79 REMARK 500 18 ALA A 60 -176.31 -69.45 REMARK 500 18 ILE A 61 40.60 -81.79 REMARK 500 18 LEU A 62 157.93 -41.46 REMARK 500 18 SER A 65 78.35 -68.58 REMARK 500 19 GLN A 9 41.85 -83.96 REMARK 500 19 LYS A 12 -51.12 -122.87 REMARK 500 19 LEU A 25 -25.59 -39.20 REMARK 500 19 ASP A 42 36.75 -84.36 REMARK 500 19 THR A 58 52.41 33.98 REMARK 500 19 ALA A 60 179.65 -51.49 REMARK 500 20 LYS A 15 125.68 -171.22 REMARK 500 20 THR A 19 161.03 -44.37 REMARK 500 20 LYS A 41 154.56 -46.14 REMARK 500 20 THR A 58 41.03 33.96 REMARK 500 20 ALA A 60 -176.49 -50.84 REMARK 500 20 ILE A 61 38.57 -91.12 REMARK 500 20 LEU A 62 144.23 -37.42 REMARK 500 20 PRO A 64 85.58 -69.65 REMARK 500 20 PRO A 67 1.28 -69.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000683.1 RELATED DB: TARGETDB
DBREF 2COO A 8 65 UNP P11182 ODB2_HUMAN 163 220
SEQADV 2COO GLY A 1 UNP P11182 CLONING ARTIFACT SEQADV 2COO SER A 2 UNP P11182 CLONING ARTIFACT SEQADV 2COO SER A 3 UNP P11182 CLONING ARTIFACT SEQADV 2COO GLY A 4 UNP P11182 CLONING ARTIFACT SEQADV 2COO SER A 5 UNP P11182 CLONING ARTIFACT SEQADV 2COO SER A 6 UNP P11182 CLONING ARTIFACT SEQADV 2COO GLY A 7 UNP P11182 CLONING ARTIFACT SEQADV 2COO GLY A 66 UNP P11182 CLONING ARTIFACT SEQADV 2COO PRO A 67 UNP P11182 CLONING ARTIFACT SEQADV 2COO SER A 68 UNP P11182 CLONING ARTIFACT SEQADV 2COO SER A 69 UNP P11182 CLONING ARTIFACT SEQADV 2COO GLY A 70 UNP P11182 CLONING ARTIFACT
SEQRES 1 A 70 GLY SER SER GLY SER SER GLY HIS GLN GLU ILE LYS GLY SEQRES 2 A 70 ARG LYS THR LEU ALA THR PRO ALA VAL ARG ARG LEU ALA SEQRES 3 A 70 MET GLU ASN ASN ILE LYS LEU SER GLU VAL VAL GLY SER SEQRES 4 A 70 GLY LYS ASP GLY ARG ILE LEU LYS GLU ASP ILE LEU ASN SEQRES 5 A 70 TYR LEU GLU LYS GLN THR GLY ALA ILE LEU PRO PRO SER SEQRES 6 A 70 GLY PRO SER SER GLY
HELIX 1 1 PRO A 20 ASN A 29 1 10 HELIX 2 2 LEU A 33 GLU A 35 5 3 HELIX 3 3 LYS A 47 LEU A 54 1 8
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000