10 20 30 40 50 60 70 80 2COK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 17-MAY-05 2COK
TITLE SOLUTION STRUCTURE OF BRCT DOMAIN OF POLY(ADP-RIBOSE) TITLE 2 POLYMERASE-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCA1 C-TURMINUS (BRCT) DOMAIN; COMPND 5 SYNONYM: PARP-1, ADPRT, NAD(+) ADP-RIBOSYLTRANSFERASE-1, COMPND 6 POLY[ADP-RIBOSE] SYNTHETASE-1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP1, ADPRT, PPOL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040809-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS BRCT DOMAIN, DNA REPAIR, POLY (ADP-RIBOSE) POLYMERASE-1, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2COK 1 VERSN REVDAT 1 17-NOV-05 2COK 0
JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF BRCT DOMAIN OF JRNL TITL 2 POLY(ADP-RIBOSE) POLYMERASE-1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.7 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2COK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024452.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM BRCT DOMAIN U-13C,15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.901, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 91.00 -177.40 REMARK 500 1 SER A 3 147.36 -172.58 REMARK 500 1 SER A 6 105.99 63.07 REMARK 500 1 SER A 12 106.48 -38.04 REMARK 500 1 ASN A 13 54.76 81.98 REMARK 500 1 ASN A 61 -173.75 -69.41 REMARK 500 1 THR A 87 40.24 -94.19 REMARK 500 1 HIS A 97 39.49 -149.70 REMARK 500 1 LYS A 107 104.53 -40.78 REMARK 500 1 SER A 111 133.22 66.81 REMARK 500 2 SER A 6 -60.55 -155.90 REMARK 500 2 ASP A 8 -175.55 63.53 REMARK 500 2 LYS A 9 93.57 58.12 REMARK 500 2 SER A 12 95.89 -41.52 REMARK 500 2 ASN A 13 51.63 87.45 REMARK 500 2 SER A 86 123.58 -179.45 REMARK 500 2 THR A 87 46.35 -90.34 REMARK 500 2 HIS A 97 44.04 -148.63 REMARK 500 2 ALA A 104 137.82 82.98 REMARK 500 2 VAL A 106 72.76 -172.60 REMARK 500 2 SER A 112 -59.08 -122.57 REMARK 500 3 SER A 2 145.76 178.23 REMARK 500 3 SER A 5 110.91 -170.89 REMARK 500 3 ASP A 8 67.79 -178.04 REMARK 500 3 SER A 12 94.63 -39.48 REMARK 500 3 ASN A 13 49.45 86.86 REMARK 500 3 LYS A 46 40.03 -107.06 REMARK 500 3 SER A 86 123.63 -172.30 REMARK 500 3 THR A 87 44.79 -90.22 REMARK 500 3 HIS A 97 40.93 -147.08 REMARK 500 4 SER A 5 169.74 57.65 REMARK 500 4 SER A 12 107.85 -33.22 REMARK 500 4 ASN A 13 55.03 81.67 REMARK 500 4 LYS A 46 45.30 -96.42 REMARK 500 4 ASN A 61 173.80 -56.41 REMARK 500 4 ARG A 73 129.46 -37.02 REMARK 500 4 THR A 87 42.57 -105.48 REMARK 500 4 HIS A 97 37.73 -151.35 REMARK 500 4 TRP A 102 -163.69 -107.92 REMARK 500 4 LYS A 107 75.18 -117.63 REMARK 500 4 SER A 108 -55.96 178.71 REMARK 500 4 SER A 112 163.99 67.01 REMARK 500 5 SER A 2 -59.69 -132.92 REMARK 500 5 SER A 5 141.81 -179.80 REMARK 500 5 SER A 6 148.87 -176.41 REMARK 500 5 ASP A 8 173.32 -48.00 REMARK 500 5 LYS A 9 81.20 73.10 REMARK 500 5 SER A 12 99.65 -47.82 REMARK 500 5 ASN A 13 51.02 88.23 REMARK 500 5 ASN A 61 -169.74 -70.25 REMARK 500 5 TRP A 102 -164.35 -109.16 REMARK 500 5 LYS A 107 171.00 -47.85 REMARK 500 5 SER A 108 84.72 -162.92 REMARK 500 5 SER A 112 144.07 -39.87 REMARK 500 6 SER A 3 156.62 63.71 REMARK 500 6 SER A 5 111.12 176.03 REMARK 500 6 ASP A 8 174.24 64.07 REMARK 500 6 LYS A 9 79.91 69.11 REMARK 500 6 SER A 12 103.56 -31.89 REMARK 500 6 ASN A 13 54.47 87.27 REMARK 500 6 LYS A 46 38.47 -96.10 REMARK 500 6 LYS A 88 -165.78 -106.36 REMARK 500 6 HIS A 97 22.58 -145.14 REMARK 500 6 VAL A 106 175.02 -49.18 REMARK 500 6 SER A 108 111.37 -167.01 REMARK 500 6 SER A 111 171.84 -53.57 REMARK 500 7 SER A 2 -59.10 -166.21 REMARK 500 7 SER A 5 -73.81 66.48 REMARK 500 7 SER A 6 151.11 -42.43 REMARK 500 7 ASP A 8 171.47 55.01 REMARK 500 7 LYS A 9 81.78 70.14 REMARK 500 7 SER A 12 96.04 -40.14 REMARK 500 7 ASN A 13 51.04 88.45 REMARK 500 7 LYS A 88 -163.95 -129.11 REMARK 500 7 HIS A 97 35.56 -158.05 REMARK 500 7 SER A 108 83.45 51.91 REMARK 500 7 SER A 112 130.61 63.29 REMARK 500 8 SER A 6 154.08 173.62 REMARK 500 8 SER A 12 96.15 -42.58 REMARK 500 8 ASN A 13 44.30 91.00 REMARK 500 8 GLU A 28 -37.10 -39.14 REMARK 500 8 LYS A 46 36.67 -95.58 REMARK 500 8 HIS A 97 35.60 -153.25 REMARK 500 8 TRP A 102 -166.57 -123.74 REMARK 500 8 ALA A 104 154.24 65.58 REMARK 500 8 SER A 111 120.33 60.48 REMARK 500 8 SER A 112 143.06 61.35 REMARK 500 9 SER A 3 98.93 50.39 REMARK 500 9 SER A 5 143.29 -178.77 REMARK 500 9 ASP A 8 89.38 -62.31 REMARK 500 9 SER A 12 98.73 -48.66 REMARK 500 9 ASN A 13 49.21 84.57 REMARK 500 9 LYS A 26 -38.56 -39.98 REMARK 500 9 ASN A 61 -166.95 -67.39 REMARK 500 9 ASN A 71 49.30 39.55 REMARK 500 9 HIS A 97 42.42 -140.84 REMARK 500 9 TRP A 102 -163.57 -104.23 REMARK 500 9 GLU A 105 -150.52 34.30 REMARK 500 9 SER A 112 104.12 67.07 REMARK 500 10 SER A 2 -61.46 -92.98 REMARK 500 10 SER A 3 165.64 63.02 REMARK 500 10 SER A 5 131.03 -172.90 REMARK 500 10 SER A 6 160.01 62.16 REMARK 500 10 SER A 12 101.29 -45.75 REMARK 500 10 ASN A 13 53.00 83.07 REMARK 500 10 LYS A 26 -35.20 -39.91 REMARK 500 10 LYS A 46 37.41 -91.93 REMARK 500 10 ASN A 61 173.90 -59.69 REMARK 500 10 ALA A 85 63.24 -165.77 REMARK 500 10 THR A 87 42.65 -89.12 REMARK 500 10 HIS A 97 37.44 -150.57 REMARK 500 10 TRP A 102 -163.13 -113.13 REMARK 500 10 ALA A 104 158.91 70.04 REMARK 500 10 GLU A 105 67.53 -160.74 REMARK 500 11 SER A 2 140.18 63.92 REMARK 500 11 SER A 3 163.74 66.72 REMARK 500 11 SER A 5 146.45 -174.83 REMARK 500 11 ASP A 8 -167.61 57.84 REMARK 500 11 LYS A 9 92.29 51.52 REMARK 500 11 SER A 12 104.09 -31.08 REMARK 500 11 ASN A 13 54.05 83.23 REMARK 500 11 ASN A 71 69.24 39.08 REMARK 500 11 SER A 86 116.28 -179.56 REMARK 500 11 THR A 87 43.37 -89.89 REMARK 500 11 HIS A 97 43.38 -142.14 REMARK 500 11 TRP A 102 -166.31 -100.26 REMARK 500 11 ALA A 104 156.44 59.25 REMARK 500 11 VAL A 106 126.26 -171.13 REMARK 500 11 SER A 112 -58.46 -164.59 REMARK 500 12 SER A 2 124.83 -177.64 REMARK 500 12 SER A 3 115.32 -173.75 REMARK 500 12 SER A 5 129.33 -173.96 REMARK 500 12 ASP A 8 100.05 177.16 REMARK 500 12 SER A 12 105.43 -33.73 REMARK 500 12 ASN A 13 54.48 86.71 REMARK 500 12 THR A 87 30.41 -91.11 REMARK 500 12 HIS A 97 29.43 -148.55 REMARK 500 12 TRP A 102 -168.08 -121.73 REMARK 500 12 ALA A 104 155.24 77.84 REMARK 500 12 LYS A 107 98.43 -174.63 REMARK 500 12 SER A 108 90.75 -177.04 REMARK 500 12 SER A 112 88.99 42.37 REMARK 500 13 SER A 3 136.68 -179.27 REMARK 500 13 SER A 5 125.75 61.42 REMARK 500 13 ASP A 8 -175.08 65.49 REMARK 500 13 LYS A 9 95.02 54.58 REMARK 500 13 SER A 12 101.07 -46.69 REMARK 500 13 ASN A 13 54.29 85.27 REMARK 500 13 GLU A 28 -39.15 -38.95 REMARK 500 13 ARG A 73 109.87 -34.39 REMARK 500 13 THR A 87 39.28 -89.58 REMARK 500 13 HIS A 97 36.23 -151.91 REMARK 500 13 GLU A 105 90.93 42.06 REMARK 500 13 SER A 111 -61.38 -166.90 REMARK 500 14 SER A 2 144.88 -170.54 REMARK 500 14 SER A 12 97.96 -44.41 REMARK 500 14 ASN A 13 52.84 88.81 REMARK 500 14 LYS A 21 134.86 -177.99 REMARK 500 14 LYS A 46 37.24 -91.73 REMARK 500 14 ASN A 61 -170.32 -63.73 REMARK 500 14 SER A 86 120.56 -177.20 REMARK 500 14 THR A 87 41.27 -89.66 REMARK 500 14 HIS A 97 37.12 -150.07 REMARK 500 14 VAL A 106 35.47 -170.60 REMARK 500 14 SER A 108 -88.61 60.87 REMARK 500 15 SER A 5 76.05 60.49 REMARK 500 15 SER A 6 146.75 178.22 REMARK 500 15 ASN A 13 54.98 83.58 REMARK 500 15 LYS A 21 135.27 -176.71 REMARK 500 15 ASN A 71 61.91 39.16 REMARK 500 15 PHE A 79 -39.20 -38.15 REMARK 500 15 SER A 86 125.97 -175.24 REMARK 500 15 THR A 87 45.49 -95.23 REMARK 500 15 HIS A 97 47.65 -140.46 REMARK 500 15 TRP A 102 -164.67 -111.94 REMARK 500 15 SER A 108 -175.79 -178.81 REMARK 500 15 SER A 111 86.19 43.06 REMARK 500 16 SER A 3 123.48 177.21 REMARK 500 16 LYS A 9 85.68 64.80 REMARK 500 16 SER A 12 96.73 -39.72 REMARK 500 16 ASN A 13 48.35 93.37 REMARK 500 16 GLN A 91 -39.50 -36.77 REMARK 500 16 HIS A 97 29.90 -150.39 REMARK 500 16 TRP A 102 -165.07 -101.99 REMARK 500 16 SER A 111 81.44 66.66 REMARK 500 17 SER A 3 -62.02 -109.60 REMARK 500 17 SER A 12 106.02 -34.61 REMARK 500 17 ASN A 13 54.25 83.85 REMARK 500 17 LYS A 21 138.92 -176.70 REMARK 500 17 GLU A 28 -37.05 -39.10 REMARK 500 17 LYS A 46 41.38 -99.30 REMARK 500 17 LYS A 62 -39.07 -39.65 REMARK 500 17 SER A 86 115.74 -178.92 REMARK 500 17 THR A 87 46.16 -87.71 REMARK 500 17 HIS A 97 40.98 -150.05 REMARK 500 17 TRP A 102 -163.28 -104.16 REMARK 500 17 ALA A 104 156.08 61.13 REMARK 500 17 LYS A 107 70.59 -108.49 REMARK 500 17 SER A 108 -59.35 74.73 REMARK 500 17 SER A 112 -61.03 -159.17 REMARK 500 18 SER A 2 147.56 -177.24 REMARK 500 18 ASP A 8 86.40 -165.44 REMARK 500 18 SER A 12 100.11 -45.23 REMARK 500 18 ASN A 13 54.36 87.32 REMARK 500 18 LYS A 21 139.41 176.99 REMARK 500 18 ASN A 61 -176.43 -62.11 REMARK 500 18 SER A 86 121.76 -170.52 REMARK 500 18 THR A 87 43.71 -87.15 REMARK 500 18 HIS A 97 35.71 -152.05 REMARK 500 18 TRP A 102 -166.28 -115.15 REMARK 500 18 VAL A 106 59.29 -116.81 REMARK 500 18 SER A 112 115.00 -163.09 REMARK 500 19 SER A 2 119.96 -176.61 REMARK 500 19 SER A 5 120.22 68.95 REMARK 500 19 SER A 6 148.68 -172.10 REMARK 500 19 ASP A 8 86.84 44.39 REMARK 500 19 SER A 12 100.57 -47.73 REMARK 500 19 ASN A 13 54.63 82.28 REMARK 500 19 GLU A 28 -39.13 -39.07 REMARK 500 19 SER A 86 134.35 179.68 REMARK 500 19 SER A 108 105.04 74.59 REMARK 500 19 SER A 111 87.18 -176.61 REMARK 500 19 SER A 112 136.54 63.68 REMARK 500 20 SER A 5 149.81 65.09 REMARK 500 20 SER A 6 115.18 -170.82 REMARK 500 20 SER A 12 108.17 -49.17 REMARK 500 20 ASN A 13 55.11 85.12 REMARK 500 20 PHE A 79 -37.59 -39.17 REMARK 500 20 HIS A 97 30.74 -151.71 REMARK 500 20 SER A 108 78.03 39.08 REMARK 500 20 SER A 111 136.00 65.74 REMARK 500 20 SER A 112 151.68 59.84 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003531.3 RELATED DB: TARGETDB
DBREF 2COK A 8 107 UNP P09874 PARP1_HUMAN 386 485
SEQADV 2COK GLY A 1 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 2 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 3 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 4 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 5 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 6 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 7 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 101 UNP P09874 PRO 479 ENGINEERED SEQADV 2COK SER A 108 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 109 UNP P09874 CLONING ARTIFACT SEQADV 2COK PRO A 110 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 111 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 112 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 113 UNP P09874 CLONING ARTIFACT
SEQRES 1 A 113 GLY SER SER GLY SER SER GLY ASP LYS PRO LEU SER ASN SEQRES 2 A 113 MET LYS ILE LEU THR LEU GLY LYS LEU SER ARG ASN LYS SEQRES 3 A 113 ASP GLU VAL LYS ALA MET ILE GLU LYS LEU GLY GLY LYS SEQRES 4 A 113 LEU THR GLY THR ALA ASN LYS ALA SER LEU CYS ILE SER SEQRES 5 A 113 THR LYS LYS GLU VAL GLU LYS MET ASN LYS LYS MET GLU SEQRES 6 A 113 GLU VAL LYS GLU ALA ASN ILE ARG VAL VAL SER GLU ASP SEQRES 7 A 113 PHE LEU GLN ASP VAL SER ALA SER THR LYS SER LEU GLN SEQRES 8 A 113 GLU LEU PHE LEU ALA HIS ILE LEU SER SER TRP GLY ALA SEQRES 9 A 113 GLU VAL LYS SER GLY PRO SER SER GLY
HELIX 1 1 ASN A 25 LEU A 36 1 12 HELIX 2 2 THR A 53 MET A 60 1 8 HELIX 3 3 ASN A 61 ALA A 70 1 10 HELIX 4 4 GLU A 77 ALA A 85 1 9 HELIX 5 5 SER A 89 HIS A 97 1 9
SHEET 1 A 4 LYS A 39 THR A 41 0 SHEET 2 A 4 LYS A 15 THR A 18 1 N ILE A 16 O THR A 41 SHEET 3 A 4 LEU A 49 ILE A 51 1 O ILE A 51 N LEU A 17 SHEET 4 A 4 VAL A 74 VAL A 75 1 O VAL A 75 N CYS A 50
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000