10 20 30 40 50 60 70 80 2COD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 17-MAY-05 2COD
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL PH DOMAIN OF ARAP2 TITLE 2 PROTEIN FROM HUMAN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTAURIN-DELTA 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: CNT-D1, ARF-GAP, RHO-GAP, ANKYRIN REPEAT AND COMPND 6 PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING PROTEIN 2, PARX COMPND 7 PROTEIN, ARAP2; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARAP2; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050125-06
KEYWDS ARF GAP AND RHO GAP WITH ANKYRIN REPEAT AND PH DOMAINS KEYWDS 2 (ARAP) 2, PH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 18-AUG-09 2COD 1 JRNL TITLE REVDAT 2 24-FEB-09 2COD 1 VERSN REVDAT 1 17-NOV-05 2COD 0
JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL PH DOMAIN OF JRNL TITL 2 ARAP2 PROTEIN FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2COD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024445.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.62MM PH DOMAIN U-13C, 15N; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 20 60.13 -111.14 REMARK 500 1 LYS A 22 33.83 38.95 REMARK 500 1 ILE A 57 103.37 -50.18 REMARK 500 1 GLN A 74 -75.36 -83.88 REMARK 500 1 PRO A 112 93.54 -69.75 REMARK 500 2 TRP A 13 107.46 -56.52 REMARK 500 2 ILE A 57 103.98 -57.65 REMARK 500 2 ARG A 75 120.57 -170.64 REMARK 500 2 THR A 76 149.76 -39.16 REMARK 500 2 ILE A 91 -71.82 -48.36 REMARK 500 3 LYS A 10 139.99 -170.35 REMARK 500 3 LEU A 17 73.59 -108.33 REMARK 500 3 PRO A 19 -177.79 -69.72 REMARK 500 3 ARG A 23 45.65 36.22 REMARK 500 3 ASN A 42 91.48 -63.05 REMARK 500 3 LYS A 44 -61.20 -103.44 REMARK 500 3 ILE A 57 107.41 -54.10 REMARK 500 3 ASP A 65 -177.20 -58.19 REMARK 500 3 GLN A 74 -52.40 -133.14 REMARK 500 4 SER A 3 150.88 -48.17 REMARK 500 4 LEU A 17 93.92 -65.00 REMARK 500 4 MET A 24 -57.22 -124.27 REMARK 500 4 LYS A 44 84.74 -66.21 REMARK 500 4 GLU A 45 94.53 -68.86 REMARK 500 4 TYR A 47 40.98 -89.29 REMARK 500 4 THR A 73 -38.42 -39.66 REMARK 500 4 GLN A 74 -62.75 -134.96 REMARK 500 5 LEU A 17 78.27 -100.34 REMARK 500 5 ASN A 42 106.06 -54.75 REMARK 500 5 ASN A 66 37.06 35.88 REMARK 500 5 THR A 104 41.70 32.16 REMARK 500 6 LYS A 10 147.34 -171.54 REMARK 500 6 LEU A 17 72.50 -104.37 REMARK 500 6 MET A 24 127.15 -35.33 REMARK 500 6 ASN A 42 -39.82 -34.80 REMARK 500 6 GLU A 43 -65.54 -90.96 REMARK 500 6 ILE A 57 98.64 -55.55 REMARK 500 6 ARG A 75 121.48 -174.94 REMARK 500 6 THR A 76 141.21 -34.91 REMARK 500 6 SER A 107 96.49 -53.81 REMARK 500 7 PRO A 19 -164.22 -69.76 REMARK 500 7 TYR A 47 134.84 -39.67 REMARK 500 7 ASP A 65 -175.29 -52.86 REMARK 500 7 ASP A 89 -72.03 -64.99 REMARK 500 7 GLN A 106 41.22 -85.51 REMARK 500 8 LEU A 17 75.16 -61.07 REMARK 500 8 PRO A 19 -169.51 -69.81 REMARK 500 8 MET A 24 86.14 -51.80 REMARK 500 8 PHE A 25 -73.40 -35.92 REMARK 500 8 GLN A 26 111.58 -164.90 REMARK 500 8 LYS A 44 146.41 -34.78 REMARK 500 8 TYR A 47 50.46 37.82 REMARK 500 8 ILE A 57 105.58 -50.73 REMARK 500 8 ASN A 66 38.63 39.17 REMARK 500 8 ARG A 75 125.75 -170.01 REMARK 500 8 LEU A 103 49.32 37.54 REMARK 500 9 SER A 5 105.99 -51.61 REMARK 500 9 LEU A 17 74.74 -62.67 REMARK 500 9 PRO A 19 -179.08 -69.79 REMARK 500 9 LYS A 22 115.22 -165.31 REMARK 500 9 ARG A 23 -70.34 -36.24 REMARK 500 9 PHE A 25 -70.93 -35.60 REMARK 500 9 LYS A 44 143.82 -39.61 REMARK 500 9 MET A 46 67.68 -117.11 REMARK 500 9 GLN A 74 -70.30 -99.35 REMARK 500 9 PRO A 112 1.78 -69.76 REMARK 500 10 SER A 2 92.94 -68.12 REMARK 500 10 LYS A 10 143.10 -173.60 REMARK 500 10 SER A 18 54.67 70.82 REMARK 500 10 GLN A 20 -59.15 -132.07 REMARK 500 10 LYS A 22 118.86 -170.34 REMARK 500 10 PHE A 25 100.06 -46.51 REMARK 500 10 ASN A 42 176.13 -48.50 REMARK 500 10 GLU A 43 89.60 -65.58 REMARK 500 10 SER A 48 44.34 -104.60 REMARK 500 10 ILE A 57 91.86 -47.70 REMARK 500 10 ARG A 75 137.92 -172.10 REMARK 500 10 LEU A 103 133.27 -174.81 REMARK 500 10 ALA A 109 105.43 -165.15 REMARK 500 10 SER A 110 101.33 -55.56 REMARK 500 10 PRO A 112 -175.88 -69.75 REMARK 500 10 SER A 113 126.24 -173.60 REMARK 500 11 LYS A 10 142.96 -173.30 REMARK 500 11 ARG A 23 -55.38 -130.30 REMARK 500 11 TYR A 47 -176.36 -53.67 REMARK 500 11 ILE A 57 106.39 -58.84 REMARK 500 11 ARG A 75 135.92 -173.24 REMARK 500 11 ALA A 109 136.42 -34.09 REMARK 500 12 ARG A 23 94.79 -55.55 REMARK 500 12 ASN A 42 45.94 -87.00 REMARK 500 12 ILE A 57 92.73 -54.49 REMARK 500 12 ASP A 65 -177.41 -55.96 REMARK 500 12 GLN A 74 -66.39 -92.70 REMARK 500 12 THR A 104 29.73 37.67 REMARK 500 12 SER A 105 133.25 -34.74 REMARK 500 13 PRO A 19 -167.58 -69.76 REMARK 500 13 GLN A 20 42.72 -95.81 REMARK 500 13 ARG A 23 -68.62 -99.63 REMARK 500 13 PHE A 25 161.76 -47.38 REMARK 500 13 GLU A 43 -70.05 -82.04 REMARK 500 13 GLU A 45 44.57 -86.56 REMARK 500 13 ILE A 57 92.88 -54.05 REMARK 500 13 SER A 102 55.03 -97.33 REMARK 500 13 THR A 104 87.08 -68.97 REMARK 500 13 ALA A 109 -66.06 -124.68 REMARK 500 14 SER A 5 132.15 -173.28 REMARK 500 14 GLU A 45 124.88 -37.18 REMARK 500 14 ARG A 75 131.18 -172.49 REMARK 500 14 THR A 104 40.27 34.77 REMARK 500 14 GLN A 106 156.80 -41.68 REMARK 500 14 SER A 107 104.94 -50.84 REMARK 500 14 ALA A 109 125.57 -35.12 REMARK 500 14 PRO A 112 -174.39 -69.69 REMARK 500 15 LYS A 10 140.15 -170.51 REMARK 500 15 LEU A 17 101.15 -46.31 REMARK 500 15 GLN A 20 104.45 -50.90 REMARK 500 15 ARG A 23 81.17 -68.97 REMARK 500 15 LYS A 49 142.52 -173.02 REMARK 500 15 ILE A 57 93.76 -51.13 REMARK 500 15 ASP A 65 -176.28 -55.37 REMARK 500 15 GLN A 74 -75.67 -83.82 REMARK 500 15 GLN A 106 44.98 -82.44 REMARK 500 15 GLN A 108 123.52 -38.29 REMARK 500 16 PRO A 19 -165.92 -69.81 REMARK 500 16 TYR A 47 110.78 -37.60 REMARK 500 16 GLN A 74 24.99 49.55 REMARK 500 16 LEU A 103 161.91 -48.47 REMARK 500 16 GLN A 108 101.36 -40.85 REMARK 500 16 ALA A 109 148.30 -173.67 REMARK 500 16 PRO A 112 -179.47 -69.76 REMARK 500 17 SER A 5 43.34 -81.06 REMARK 500 17 LYS A 10 137.21 -170.67 REMARK 500 17 ARG A 23 163.72 -46.41 REMARK 500 17 TYR A 47 118.67 -163.79 REMARK 500 17 LEU A 54 -38.57 -39.67 REMARK 500 17 ILE A 57 106.05 -52.80 REMARK 500 17 ASP A 65 -174.01 -51.69 REMARK 500 17 ASN A 66 48.21 -75.29 REMARK 500 17 ARG A 75 120.40 -171.60 REMARK 500 17 THR A 76 138.88 -35.43 REMARK 500 17 PRO A 112 -177.46 -69.73 REMARK 500 18 LEU A 17 31.48 -84.38 REMARK 500 18 PRO A 19 -165.31 -69.73 REMARK 500 18 LYS A 22 -176.07 -52.34 REMARK 500 18 GLN A 26 -75.16 -128.08 REMARK 500 18 LYS A 27 117.65 -175.12 REMARK 500 18 TYR A 40 106.49 -164.28 REMARK 500 18 ASN A 42 -58.82 -133.38 REMARK 500 18 GLU A 45 161.68 -44.93 REMARK 500 18 MET A 46 44.66 -92.39 REMARK 500 18 ASP A 65 -176.08 -62.69 REMARK 500 18 GLN A 74 -72.65 -49.68 REMARK 500 18 THR A 104 126.07 -34.35 REMARK 500 19 PRO A 19 -175.98 -69.77 REMARK 500 19 ARG A 23 46.93 -77.60 REMARK 500 19 SER A 48 118.43 -36.20 REMARK 500 19 ILE A 57 92.62 -50.80 REMARK 500 19 ASN A 66 44.74 35.63 REMARK 500 19 ARG A 75 116.83 -172.90 REMARK 500 19 THR A 76 140.84 -37.06 REMARK 500 19 PRO A 112 -177.78 -69.77 REMARK 500 20 MET A 24 116.91 -173.25 REMARK 500 20 TYR A 47 34.66 39.97 REMARK 500 20 LEU A 54 -37.65 -38.44 REMARK 500 20 ASP A 65 -65.58 -101.42 REMARK 500 20 ARG A 75 111.49 -170.92 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002027.1 RELATED DB: TARGETDB
DBREF 2COD A 8 109 UNP Q8WZ64 CEND1_HUMAN 483 584
SEQADV 2COD GLY A 1 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 2 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 3 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD GLY A 4 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 5 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 6 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD GLY A 7 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 110 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD GLY A 111 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD PRO A 112 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 113 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD SER A 114 UNP Q8WZ64 EXPRESSION TAG SEQADV 2COD GLY A 115 UNP Q8WZ64 EXPRESSION TAG
SEQRES 1 A 115 GLY SER SER GLY SER SER GLY LYS VAL LYS SER GLY TRP SEQRES 2 A 115 LEU ASP LYS LEU SER PRO GLN GLY LYS ARG MET PHE GLN SEQRES 3 A 115 LYS ARG TRP VAL LYS PHE ASP GLY LEU SER ILE SER TYR SEQRES 4 A 115 TYR ASN ASN GLU LYS GLU MET TYR SER LYS GLY ILE ILE SEQRES 5 A 115 PRO LEU SER ALA ILE SER THR VAL ARG VAL GLN GLY ASP SEQRES 6 A 115 ASN LYS PHE GLU VAL VAL THR THR GLN ARG THR PHE VAL SEQRES 7 A 115 PHE ARG VAL GLU LYS GLU GLU GLU ARG ASN ASP TRP ILE SEQRES 8 A 115 SER ILE LEU LEU ASN ALA LEU LYS SER GLN SER LEU THR SEQRES 9 A 115 SER GLN SER GLN ALA SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 84 GLN A 101 1 18
SHEET 1 A 7 ILE A 51 PRO A 53 0 SHEET 2 A 7 SER A 36 TYR A 40 -1 SHEET 3 A 7 GLN A 26 PHE A 32 -1 SHEET 4 A 7 LYS A 10 LYS A 16 -1 SHEET 5 A 7 THR A 76 ARG A 80 -1 SHEET 6 A 7 LYS A 67 VAL A 71 -1 SHEET 7 A 7 THR A 59 VAL A 62 -1
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000