10 20 30 40 50 60 70 80 2CEW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 10-FEB-06 2CEW
TITLE 3D STRUCTURE PREDICTION OF THE IG2-IG4 DOMAINS OF THE TITLE 2 ECTODOMAIN REGION OF THE HUMAN HEPATOCYTE GROWTH FACTOR- TITLE 3 SCATTER FACTOR RECEPTOR, MET
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG2-IG4 DOMAINS, RESIDUES 657-928; COMPND 5 SYNONYM: HEPATOCYTE GROWTH FACTOR-SCATTER FACTOR RECEPTOR, COMPND 6 MET PROTO-ONCOGENE TYROSINE KINASE, C-MET, HGF RECEPTOR, COMPND 7 HGF-SF RECEPTOR; COMPND 8 EC: 2.7.1.112; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS TRANSFERASE, GLYCOPROTEIN, HEPATOCYTE GROWTH FACTOR-SCATTER KEYWDS 2 FACTOR RECEPTOR, MET-RECEPTOR, PROTO-ONCOGENE, TYROSINE- KEYWDS 3 PROTEIN KINASE, ALTERNATIVE SPLICING, ATP-BINDING, KEYWDS 4 CHROMOSOMAL TRANSLOCATION, DISEASE MUTATION, KINASE, KEYWDS 5 MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHORYLATION, RECEPTOR, KEYWDS 6 TRANSMEMBRANE
EXPDTA THEORETICAL MODEL
AUTHOR R.N.MIGUEL,T.L.BLUNDELL,E.GHERARDI
REVDAT 2 22-MAR-06 2CEW 1 JRNL REVDAT 1 21-FEB-06 2CEW 0
JRNL AUTH E.GHERARDI,S.SANDIN,M.V.PETOUKHOV,J.FINCH, JRNL AUTH 2 M.E.YOULES,L.G.OFVERSTEDT,R.N.MIGUEL,T.L.BLUNDELL, JRNL AUTH 3 G.F.VANDE WOUDE,U.SKOGLUND,D.I.SVERGUN JRNL TITL STRUCTURAL BASIS OF HEPATOCYTE GROWTH JRNL TITL 2 FACTOR/SCATTER FACTOR AND MET SIGNALLING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 4046 2006 JRNL REFN ASTM PNASA6 US ISSN 0027-8424
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.GHERARDI,M.E.YOULES,R.N.MIGUEL,T.L.BLUNDELL, REMARK 1 AUTH 2 L.IAMELE,J.GOUGH,A.BANDYOPADHYAY,G.HARTMANN, REMARK 1 AUTH 3 J.G.BUTLER REMARK 1 TITL FUNCTIONAL MAP AND DOMAIN STRUCTURE OF MET, THE REMARK 1 TITL 2 PRODUCT OF THE C-MET PROTOONCOGENE AND RECEPTOR REMARK 1 TITL 3 FOR HEPATOCYTE GROWTH FACTOR-SCATTER FACTOR REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 100 12039 2003 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS REGION OF MET IS FLEXIBLE. THE REMARK 3 RELATIVE ORIENTATION OF THE DOMAINS CORRESPONDS TO ONE OF THE REMARK 3 OBSERVATION FROM ELECTRON MICROSCOPY
REMARK 4 REMARK 4 2CEW COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 13-FEB-2006. REMARK 100 THE EBI ID CODE IS EBI-27694.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 400 REMARK 400 COMPOUND REMARK 400 RECEPTOR FOR HEPATOCYTE GROWTH FACTOR. HAS A TYROSINE- REMARK 400 PROTEIN KINASE ACTIVITY
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CG2 VAL A 779 CD2 LEU A 806 1.26 REMARK 500 O HIS A 780 CD1 LEU A 809 1.41 REMARK 500 CE MET A 775 CD1 LEU A 815 1.46 REMARK 500 ND1 HIS A 837 CZ2 TRP A 911 1.50 REMARK 500 CG GLU A 740 CG ASN A 766 1.53 REMARK 500 CB VAL A 779 CD2 LEU A 806 1.67 REMARK 500 CG HIS A 837 CZ2 TRP A 911 1.73 REMARK 500 CE1 HIS A 837 CE2 TRP A 911 1.75 REMARK 500 CG GLU A 740 CB ASN A 766 1.77 REMARK 500 ND1 HIS A 837 CE2 TRP A 911 1.78 REMARK 500 CE1 HIS A 837 NE1 TRP A 911 1.78 REMARK 500 CD1 ILE A 747 CE2 TYR A 830 1.80 REMARK 500 N GLY A 756 OH TYR A 835 1.81 REMARK 500 CG GLU A 740 OD1 ASN A 766 1.83 REMARK 500 CD2 LEU A 767 CD2 LEU A 815 1.88 REMARK 500 CD1 ILE A 747 CD2 TYR A 830 1.98 REMARK 500 O HIS A 780 CG LEU A 809 2.03 REMARK 500 CE1 HIS A 837 CZ2 TRP A 911 2.07 REMARK 500 OE2 GLU A 740 CB ASN A 766 2.09 REMARK 500 ND2 ASN A 768 CG2 THR A 817 2.09 REMARK 500 OE2 GLU A 740 O ASN A 766 2.11 REMARK 500 CG GLN A 791 OG1 THR A 802 2.12 REMARK 500 ND1 HIS A 837 CH2 TRP A 911 2.13 REMARK 500 CG HIS A 837 CH2 TRP A 911 2.14 REMARK 500 O GLU A 740 ND2 ASN A 766 2.17 REMARK 500 CB HIS A 837 CH2 TRP A 911 2.17 REMARK 500 CD GLN A 791 OG1 THR A 802 2.19 REMARK 500 NE2 HIS A 837 CG2 ILE A 915 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 742 CD PRO A 742 N 0.137 REMARK 500 PRO A 814 CD PRO A 814 N 0.163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 740 O - C - N ANGL. DEV. =-15.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 768 148.92 100.30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 740 ASP A 741 -100.79 REMARK 500 HIS A 837 ASN A 838 -100.85
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED.
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FYR RELATED DB: PDB REMARK 900 DIMER FORMATION THROUGH DOMAIN SWAPPING IN REMARK 900 THE CRYSTALSTRUCTURE OF THE GRB2-SH2 AC- REMARK 900 PYVNV COMPLEX REMARK 900 RELATED ID: 1R0P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TYROSINE KINASE REMARK 900 DOMAIN OF THEHEPATOCYTE GROWTH FACTOR RECEPTOR REMARK 900 C-MET IN COMPLEX WITHTHE MICROBIAL REMARK 900 ALKALOID K-252A REMARK 900 RELATED ID: 1R1W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TYROSINE KINASE REMARK 900 DOMAIN OF THEHEPATOCYTE GROWTH FACTOR RECEPTOR REMARK 900 C-MET REMARK 900 RELATED ID: 1SHY RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HGF BETA-CHAIN IN REMARK 900 COMPLEX WITH THESEMA DOMAIN OF THE MET REMARK 900 RECEPTOR. REMARK 900 RELATED ID: 1SSL RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PSI DOMAIN FROM REMARK 900 THE MET RECEPTOR REMARK 900 RELATED ID: 1UX3 RELATED DB: PDB REMARK 900 3D STRUCTURE PREDICTION OF AMINO ACIDS 25 REMARK 900 TO 656 OF HUMAN HEPATOCYTE GROWTH FACTOR/ REMARK 900 SCATTER FACTOR (MET) RECEPTOR
DBREF 2CEW A 657 928 UNP P08581 MET_HUMAN 657 928
SEQRES 1 A 272 PRO VAL ILE THR SER ILE SER PRO LYS TYR GLY PRO MET SEQRES 2 A 272 ALA GLY GLY THR LEU LEU THR LEU THR GLY ASN TYR LEU SEQRES 3 A 272 ASN SER GLY ASN SER ARG HIS ILE SER ILE GLY GLY LYS SEQRES 4 A 272 THR CYS THR LEU LYS SER VAL SER ASN SER ILE LEU GLU SEQRES 5 A 272 CYS TYR THR PRO ALA GLN THR ILE SER THR GLU PHE ALA SEQRES 6 A 272 VAL LYS LEU LYS ILE ASP LEU ALA ASN ARG GLU THR SER SEQRES 7 A 272 ILE PHE SER TYR ARG GLU ASP PRO ILE VAL TYR GLU ILE SEQRES 8 A 272 HIS PRO THR LYS SER PHE ILE SER GLY GLY SER THR ILE SEQRES 9 A 272 THR GLY VAL GLY LYS ASN LEU ASN SER VAL SER VAL PRO SEQRES 10 A 272 ARG MET VAL ILE ASN VAL HIS GLU ALA GLY ARG ASN PHE SEQRES 11 A 272 THR VAL ALA CYS GLN HIS ARG SER ASN SER GLU ILE ILE SEQRES 12 A 272 CYS CYS THR THR PRO SER LEU GLN GLN LEU ASN LEU GLN SEQRES 13 A 272 LEU PRO LEU LYS THR LYS ALA PHE PHE MET LEU ASP GLY SEQRES 14 A 272 ILE LEU SER LYS TYR PHE ASP LEU ILE TYR VAL HIS ASN SEQRES 15 A 272 PRO VAL PHE LYS PRO PHE GLU LYS PRO VAL MET ILE SER SEQRES 16 A 272 MET GLY ASN GLU ASN VAL LEU GLU ILE LYS GLY ASN ASP SEQRES 17 A 272 ILE ASP PRO GLU ALA VAL LYS GLY GLU VAL LEU LYS VAL SEQRES 18 A 272 GLY ASN LYS SER CYS GLU ASN ILE HIS LEU HIS SER GLU SEQRES 19 A 272 ALA VAL LEU CYS THR VAL PRO ASN ASP LEU LEU LYS LEU SEQRES 20 A 272 ASN SER GLU LEU ASN ILE GLU TRP LYS GLN ALA ILE SER SEQRES 21 A 272 SER THR VAL LEU GLY LYS VAL ILE VAL GLN PRO ASP
SHEET 1 AA 4 VAL A 658 SER A 663 0 SHEET 2 AA 4 LEU A 674 ASN A 680 -1 O THR A 676 N SER A 663 SHEET 3 AA 4 ILE A 706 TYR A 710 -1 O LEU A 707 N LEU A 677 SHEET 4 AA 4 THR A 698 VAL A 702 -1 O THR A 698 N TYR A 710 SHEET 1 AB 5 TYR A 666 GLY A 667 0 SHEET 2 AB 5 THR A 733 TYR A 738 1 O SER A 737 N GLY A 667 SHEET 3 AB 5 GLU A 719 LYS A 725 -1 O PHE A 720 N PHE A 736 SHEET 4 AB 5 HIS A 689 ILE A 692 -1 O HIS A 689 N LYS A 725 SHEET 5 AB 5 LYS A 695 THR A 696 -1 O LYS A 695 N ILE A 692 SHEET 1 AC 4 ILE A 743 HIS A 748 0 SHEET 2 AC 4 THR A 759 LYS A 765 -1 O THR A 761 N HIS A 748 SHEET 3 AC 4 ILE A 798 THR A 802 -1 O ILE A 799 N GLY A 762 SHEET 4 AC 4 GLN A 791 SER A 794 -1 O GLN A 791 N THR A 802 SHEET 1 AD 5 LYS A 751 SER A 752 0 SHEET 2 AD 5 TYR A 830 TYR A 835 1 O ILE A 834 N SER A 752 SHEET 3 AD 5 LEU A 809 LEU A 813 -1 O LEU A 809 N TYR A 835 SHEET 4 AD 5 ARG A 774 HIS A 780 -1 O ASN A 778 N GLN A 812 SHEET 5 AD 5 LEU A 815 LYS A 816 -1 O LYS A 816 N ARG A 774 SHEET 1 AE 5 LYS A 751 SER A 752 0 SHEET 2 AE 5 TYR A 830 TYR A 835 1 O ILE A 834 N SER A 752 SHEET 3 AE 5 LEU A 809 LEU A 813 -1 O LEU A 809 N TYR A 835 SHEET 4 AE 5 ARG A 774 HIS A 780 -1 O ASN A 778 N GLN A 812 SHEET 5 AE 5 ASN A 785 ALA A 789 -1 O PHE A 786 N VAL A 779 SHEET 1 AF 4 VAL A 840 GLU A 845 0 SHEET 2 AF 4 LEU A 858 ASN A 863 -1 O GLU A 859 N GLU A 845 SHEET 3 AF 4 ALA A 891 CYS A 894 -1 O VAL A 892 N ILE A 860 SHEET 4 AF 4 ASN A 884 LEU A 887 -1 N ILE A 885 O LEU A 893 SHEET 1 AG 4 LYS A 880 SER A 881 0 SHEET 2 AG 4 VAL A 874 VAL A 877 -1 O VAL A 877 N LYS A 880 SHEET 3 AG 4 ASN A 904 GLU A 910 -1 O ASN A 908 N LYS A 876 SHEET 4 AG 4 LEU A 920 ILE A 924 -1 O LEU A 920 N LEU A 907
SSBOND 1 CYS A 697 CYS A 709 SSBOND 2 CYS A 790 CYS A 801 SSBOND 3 CYS A 882 CYS A 894
CISPEP 1 SER A 663 PRO A 664 0 -1.97 CISPEP 2 HIS A 748 PRO A 749 0 -3.12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000