10 20 30 40 50 60 70 80 2CE5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 03-FEB-06 2CE5
TITLE THEORETICAL MODEL FOR THE PLASMOSIUM FALCIPARUM SPERMIDINE TITLE 2 SYNTHASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 13-321; COMPND 5 EC: 2.5.1.16; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS PUTRICINE BIOSYNTHESIS, SPERMIDINE SYNTHASE, TRANSFERASE
EXPDTA THEORETICAL MODEL
AUTHOR D.M.R SEKHARA REDDY
REVDAT 1 16-OCT-06 2CE5 0
JRNL AUTH D.M.R SEKHARA REDDY JRNL TITL THEORETICAL MODEL FOR THE PLASMOSIUM FALCIPARUM JRNL TITL 2 SPERMIDINE SYNTHASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE. DISORDERED REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY
REMARK 4 REMARK 4 2CE5 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 6-FEB-2006. REMARK 100 THE EBI ID CODE IS EBI-27571.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS BUILT USING THE STRUCTURE OF ARABIDOPSIS REMARK 220 THALIANA SPERMIDNE SYNTHASE AS A BASIS
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 41 N GLY A 41 CA 0.139 REMARK 500 GLY A 41 CA GLY A 41 C 0.171 REMARK 500 TYR A 252 C PRO A 253 N -0.153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 6 N - CA - C ANGL. DEV. = 25.1 DEGREES REMARK 500 GLY A 6 C - N - CA ANGL. DEV. = 40.3 DEGREES REMARK 500 LEU A 11 C - N - CA ANGL. DEV. = 44.9 DEGREES REMARK 500 GLY A 41 N - CA - C ANGL. DEV. = 23.0 DEGREES REMARK 500 GLY A 41 C - N - CA ANGL. DEV. = 33.2 DEGREES REMARK 500 GLN A 42 C - N - CA ANGL. DEV. = 26.6 DEGREES REMARK 500 SER A 45 N - CA - CB ANGL. DEV. = 24.5 DEGREES REMARK 500 GLU A 47 C - N - CA ANGL. DEV. = 33.8 DEGREES REMARK 500 ILE A 80 N - CA - C ANGL. DEV. =-24.3 DEGREES REMARK 500 TYR A 252 CA - CB - CG ANGL. DEV. = 28.7 DEGREES REMARK 500 TYR A 252 C - N - CA ANGL. DEV. = 27.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 76.84 102.96 REMARK 500 PHE A 32 -136.66 146.72 REMARK 500 ALA A 43 -89.23 113.13 REMARK 500 PHE A 44 120.19 73.20 REMARK 500 GLU A 47 -87.69 64.02 REMARK 500 ILE A 48 163.37 15.23 REMARK 500 ALA A 282 139.96 69.83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 70 GLY A 71 144.43
DBREF 2CE5 A 1 309 UNP Q9NFS5 Q9NFS5_PLAFA 13 321
SEQRES 1 A 309 SER VAL VAL LEU LEU GLY GLY LEU CYS SER LEU ALA TYR SEQRES 2 A 309 TYR HIS LEU LYS ASN LYS PHE HIS LEU SER GLN PHE CYS SEQRES 3 A 309 PHE SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP SEQRES 4 A 309 PRO GLY GLN ALA PHE SER VAL GLU ILE LYS LYS ILE LEU SEQRES 5 A 309 TYR GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE SEQRES 6 A 309 GLU SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY SEQRES 7 A 309 VAL ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS SEQRES 8 A 309 GLU MET MET THR HIS ILE PRO MET THR VAL SER LYS GLU SEQRES 9 A 309 PRO LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY SEQRES 10 A 309 ILE ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN SEQRES 11 A 309 ILE ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SEQRES 12 A 309 SER LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU SEQRES 13 A 309 ASP LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS SEQRES 14 A 309 PHE LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE SEQRES 15 A 309 VAL ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU SEQRES 16 A 309 PHE ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU SEQRES 17 A 309 LYS PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU SEQRES 18 A 309 TRP ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR SEQRES 19 A 309 ALA LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SEQRES 20 A 309 SER ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU SEQRES 21 A 309 CYS CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN SEQRES 22 A 309 LYS LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR SEQRES 23 A 309 TYR ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO SEQRES 24 A 309 ALA PHE LEU LEU LYS GLU ILE GLU ASN ILE
HELIX 1 1 GLU A 87 THR A 100 1 14 HELIX 2 2 GLY A 116 LYS A 124 1 9 HELIX 3 3 ASP A 137 PHE A 148 1 12 HELIX 4 4 PHE A 148 CYS A 153 1 6 HELIX 5 5 GLY A 154 ASP A 157 5 4 HELIX 6 6 ASP A 166 VAL A 174 1 9 HELIX 7 7 GLY A 190 PHE A 196 5 7 HELIX 8 8 ASN A 197 ALA A 207 1 11 HELIX 9 9 HIS A 224 PHE A 239 1 16 HELIX 10 10 TYR A 252 CYS A 254 5 3 HELIX 11 11 ASN A 288 ALA A 295 1 8 HELIX 12 12 PRO A 299 GLU A 307 1 9
SHEET 1 AA 4 TYR A 53 LYS A 56 0 SHEET 2 AA 4 ASN A 61 PHE A 65 -1 O VAL A 62 N THR A 55 SHEET 3 AA 4 VAL A 73 LEU A 76 -1 O VAL A 73 N PHE A 65 SHEET 4 AA 4 VAL A 79 THR A 83 -1 O VAL A 79 N LEU A 76 SHEET 1 AB 7 VAL A 160 ILE A 164 0 SHEET 2 AB 7 ASN A 130 GLU A 135 1 O ILE A 131 N ASN A 161 SHEET 3 AB 7 ASN A 107 VAL A 111 1 O VAL A 108 N ASP A 132 SHEET 4 AB 7 TYR A 178 VAL A 183 1 N ASP A 179 O ASN A 107 SHEET 5 AB 7 LEU A 208 GLN A 217 1 N LYS A 209 O TYR A 178 SHEET 6 AB 7 CYS A 256 SER A 263 -1 O LEU A 260 N ALA A 216 SHEET 7 AB 7 LYS A 241 SER A 248 -1 O LYS A 241 N SER A 263
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000