10 20 30 40 50 60 70 80 2BSF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 20-MAY-05 2BSF
TITLE STRUCTURE OF THE C-TERMINAL RECEPTOR-BINDING DOMAIN OF TITLE 2 AVIAN REOVIRUS FIBRE SIGMAC, ZN CRYSTAL FORM.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGMA C CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RECEPTOR-BINDING REGION, RESIDUES COMPND 5 151-326; COMPND 6 SYNONYM: SIGMA-3 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN REOVIRUS; SOURCE 3 ORGANISM_TAXID: 38170; SOURCE 4 STRAIN: S1133; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28CPLUS; SOURCE 10 OTHER_DETAILS: THE AVIAN REOVIRUS STRAIN S1133 WAS SOURCE 11 ORIGINALLY PROVIDED BY DR. PHILIP I.MARCUS WHEN DR. J. SOURCE 12 BENAVENTE WAS A ROCHE VISITING SCIENTIST IN THE SOURCE 13 LABORATORY OF DR. A.SHATKIN
KEYWDS ORTHOREOVIRUS, TRIPLE BETA-SPIRAL, BETA-BARREL, VIRAL KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.GUARDADO CALVO,G.C.FOX,X.L.HERMO PARRADO,A.L.LLAMAS-SAIZ, AUTHOR 2 M.J.VAN RAAIJ
REVDAT 3 22-OCT-14 2BSF 1 REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2BSF 1 VERSN REVDAT 1 03-NOV-05 2BSF 0
JRNL AUTH P.GUARDADO CALVO,G.C.FOX,X.L.HERMO PARRADO, JRNL AUTH 2 A.L.LLAMAS-SAIZ,C.COSTAS,J.MARTINEZ-COSTAS, JRNL AUTH 3 J.BENAVENTE,M.J.VAN RAAIJ JRNL TITL STRUCTURE OF THE CARBOXY-TERMINAL RECEPTOR- JRNL TITL 2 BINDING DOMAIN OF AVIAN REOVIRUS FIBRE SIGMAC JRNL REF J.MOL.BIOL. V. 354 137 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16236316 JRNL DOI 10.1016/J.JMB.2005.09.034
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.VAN RAAIJ,X.L.HERMO PARRADO,P.GUARDADO CALVO, REMARK 1 AUTH 2 G.C.FOX,A.L.LLAMAS-SAIZ,C.COSTAS,J.MARTINEZ-COSTAS, REMARK 1 AUTH 3 J.BENAVENTE REMARK 1 TITL CRYSTALLISATION OF THE C-TERMINAL GLOBULAR DOMAIN REMARK 1 TITL 2 OF AVIAN REOVIRUS FIBRE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 651 2005 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 16511119 REMARK 1 DOI 10.1107/S1744309105016933 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.D.CHAPPELL,A.E.PROTA,T.S.DERMODY,T.STEHLE REMARK 1 TITL CRYSTAL STRUCTURE OF REOVIRUS ATTACHMENT PROTEIN REMARK 1 TITL 2 SIGMA1 REVEALS EVOLUTIONARY RELATIONSHIP TO REMARK 1 TITL 3 ADENOVIRUS FIBER REMARK 1 REF EMBO J. V. 21 1 2002 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 11782420 REMARK 1 DOI 10.1093/EMBOJ/21.1.1 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.MARTINEZ-COSTAS,A.GRANDE,R.VARELA, REMARK 1 AUTH 2 C.GARCIA-MARTINEZ,J.BENAVENTE REMARK 1 TITL PROTEIN ARCHITECTURE OF AVIAN REOVIRUS S1133 AND REMARK 1 TITL 2 IDENTIFICATION OF THE CELL ATTACHMENT PROTEIN REMARK 1 REF J.VIROL. V. 71 59 1997 REMARK 1 REFN ISSN 0022-538X REMARK 1 PMID 8985323 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.GRANDE,E.RODRIGUEZ,C.COSTAS,E.EVERITT,J.BENAVENTE REMARK 1 TITL OLIGOMERIZATION AND CELL-BINDING PROPERTIES OF THE REMARK 1 TITL 2 AVIAN REOVIRUS CELL-ATTACHMENT PROTEIN SIGMAC REMARK 1 REF VIROLOGY V. 274 367 2000 REMARK 1 REFN ISSN 0042-6822 REMARK 1 PMID 10964779 REMARK 1 DOI 10.1006/VIRO.2000.0473 REMARK 1 REFERENCE 5 REMARK 1 AUTH G.BODELON,L.LABRADA,J.MARTINEZ-COSTAS,J.BENAVENTE REMARK 1 TITL THE AVIAN REOVIRUS GENOME SEGMENT S1 IS A REMARK 1 TITL 2 FUNCTIONALLY TRICISTRONIC GENE THAT EXPRESSES ONE REMARK 1 TITL 3 STRUCTURE AND TWO NONSTRUCTURAL PROTEINS IN REMARK 1 TITL 4 INFECTED CELLS REMARK 1 REF VIROLOGY V. 290 181 2001 REMARK 1 REFN ISSN 0042-6822 REMARK 1 PMID 11883183 REMARK 1 DOI 10.1006/VIRO.2001.1159 REMARK 1 REFERENCE 6 REMARK 1 AUTH A.GRANDE,C.COSTAS,J.BENAVENTE REMARK 1 TITL SUBUNIT COMPOSITION AND CONFORMATIONAL STABILITY REMARK 1 TITL 2 OF THE OLIGOMERIC FORM OF THE AVIAN REOVIRUS CELL- REMARK 1 TITL 3 ATTACHMENT PROTEIN SIGMAC REMARK 1 REF J.GEN.VIROL. V. 83 131 2002 REMARK 1 REFN ISSN 0022-1317 REMARK 1 PMID 11752709
REMARK 2 REMARK 2 RESOLUTION. 2.1 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 12815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.46000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1368 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1864 ; 1.750 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 175 ; 7.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;37.205 ;22.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 201 ;13.922 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;23.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 217 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1033 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 541 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 944 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 896 ; 2.142 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1418 ; 3.356 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 529 ; 5.314 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 446 ; 7.376 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.
REMARK 4 REMARK 4 2BSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-05. REMARK 100 THE PDBE ID CODE IS EBI-24093.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28191,1.15872, 1.28271, REMARK 200 1.28194 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 1.5 M REMARK 280 AMMONIUM SULPHATE, 12% GLYCEROL, 10 MM ZINC SULPHATE
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.77700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 37.38850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.75878 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2005 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 152 -19.94 46.90 REMARK 500 VAL A 186 -61.41 67.48 REMARK 500 SER A 210 139.74 -173.44 REMARK 500 HIS A 255 -153.98 80.30 REMARK 500 ILE A 256 93.93 153.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 254 HIS A 255 -127.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 152 20.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1330 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 153 OE2 REMARK 620 2 HIS A 158 NE2 116.4 REMARK 620 3 HIS A 287 ND1 112.9 95.3 REMARK 620 4 HOH A2164 O 115.7 108.7 105.7 REMARK 620 N 1 2 3
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1330
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BT7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL RECEPTOR-BINDING REMARK 900 DOMAIN OF AVIAN REOVIRUS FIBRE SIGMAC, CD REMARK 900 CRYSTAL FORM REMARK 900 RELATED ID: 2BT8 RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL RECEPTOR-BINDING REMARK 900 DOMAIN OF AVIAN REOVIRUS FIBRE SIGMAC, REMARK 900 SPACE GROUP P6322.
DBREF 2BSF A 151 326 UNP O12287 O12287_REOV9 151 326
SEQRES 1 A 176 SER LEU GLU SER THR ALA SER HIS GLY LEU SER PHE SER SEQRES 2 A 176 PRO PRO LEU SER VAL ALA ASP GLY VAL VAL SER LEU ASP SEQRES 3 A 176 MET ASP PRO TYR PHE CYS SER GLN ARG VAL SER LEU THR SEQRES 4 A 176 SER TYR SER ALA GLU ALA GLN LEU MET GLN PHE ARG TRP SEQRES 5 A 176 MET ALA ARG GLY THR ASN GLY SER SER ASP THR ILE ASP SEQRES 6 A 176 MET THR VAL ASN ALA HIS CYS HIS GLY ARG ARG THR ASP SEQRES 7 A 176 TYR MET MET SER SER THR GLY ASN LEU THR VAL THR SER SEQRES 8 A 176 ASN VAL VAL LEU LEU THR PHE ASP LEU SER ASP ILE THR SEQRES 9 A 176 HIS ILE PRO SER ASP LEU ALA ARG LEU VAL PRO SER ALA SEQRES 10 A 176 GLY PHE GLN ALA ALA SER PHE PRO VAL ASP VAL SER PHE SEQRES 11 A 176 THR ARG ASP SER ALA THR HIS ALA TYR GLN ALA TYR GLY SEQRES 12 A 176 VAL TYR SER SER SER ARG VAL PHE THR ILE THR PHE PRO SEQRES 13 A 176 THR GLY GLY ASP GLY THR ALA ASN ILE ARG SER LEU THR SEQRES 14 A 176 VAL ARG THR GLY ILE ASP THR
HET SO4 A1327 5 HET SO4 A1328 5 HET SO4 A1329 5 HET ZN A1330 1
HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION
FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *164(H2 O)
HELIX 1 1 ASP A 259 VAL A 264 5 6 HELIX 2 2 SER A 266 ALA A 271 1 6
SHEET 1 AA 2 LEU A 166 ALA A 169 0 SHEET 2 AA 2 VAL A 172 LEU A 175 -1 O VAL A 172 N ALA A 169 SHEET 1 AB 2 CYS A 182 GLN A 184 0 SHEET 2 AB 2 LEU A 188 SER A 190 -1 O THR A 189 N SER A 183 SHEET 1 AC 5 LEU A 237 VAL A 239 0 SHEET 2 AC 5 ALA A 313 ASP A 325 -1 O ALA A 313 N VAL A 239 SHEET 3 AC 5 ARG A 226 THR A 234 -1 O THR A 227 N ILE A 324 SHEET 4 AC 5 THR A 213 HIS A 223 -1 O ASP A 215 N THR A 234 SHEET 5 AC 5 GLN A 196 ASN A 208 -1 O GLN A 196 N CYS A 222 SHEET 1 AD 7 LEU A 237 VAL A 239 0 SHEET 2 AD 7 ALA A 313 ASP A 325 -1 O ALA A 313 N VAL A 239 SHEET 3 AD 7 PHE A 274 ARG A 282 -1 O ASP A 277 N ARG A 321 SHEET 4 AD 7 ALA A 285 SER A 297 -1 O ALA A 285 N ARG A 282 SHEET 5 AD 7 VAL A 300 PRO A 306 -1 O VAL A 300 N SER A 296 SHEET 6 AD 7 VAL A 243 ASP A 249 -1 O VAL A 244 N PHE A 305 SHEET 7 AD 7 GLN A 196 ASN A 208 -1 O ARG A 205 N THR A 247
LINK ZN ZN A1330 OE2 GLU A 153 1555 1555 1.98 LINK ZN ZN A1330 NE2 HIS A 158 1555 1555 2.08 LINK ZN ZN A1330 ND1 HIS A 287 1555 1556 2.25 LINK ZN ZN A1330 O HOH A2164 1555 1555 2.64
CISPEP 1 PRO A 164 PRO A 165 0 8.13
SITE 1 AC1 6 ARG A 201 ASP A 283 SER A 284 ARG A 316 SITE 2 AC1 6 HOH A2161 HOH A2162 SITE 1 AC2 4 ARG A 225 ALA A 261 ARG A 262 HOH A2021 SITE 1 AC3 3 SER A 297 SER A 298 HOH A2139 SITE 1 AC4 4 GLU A 153 HIS A 158 HIS A 287 HOH A2164
CRYST1 74.777 74.777 74.639 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013373 0.007721 0.000000 0.00000
SCALE2 0.000000 0.015442 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013398 0.00000