10 20 30 40 50 60 70 80 2BP2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE ZYMOGEN 05-JUN-81 2BP2
TITLE THE STRUCTURE OF BOVINE PANCREATIC PROPHOSPHOLIPASE A2 AT TITLE 2 3.0 ANGSTROMS RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913
KEYWDS HYDROLASE ZYMOGEN
EXPDTA X-RAY DIFFRACTION
AUTHOR B.W.DIJKSTRA,G.J.H.VANNES,K.H.KALK,N.P.BRANDENBURG, AUTHOR 2 W.G.J.HOL,J.DRENTH
REVDAT 7 24-FEB-09 2BP2 1 VERSN REVDAT 6 30-SEP-83 2BP2 1 REVDAT REVDAT 5 13-JUN-83 2BP2 1 AUTHOR JRNL REVDAT 4 07-MAR-83 2BP2 1 JRNL REVDAT 3 15-APR-82 2BP2 1 JRNL REVDAT 2 03-AUG-81 2BP2 1 HELIX REVDAT 1 16-JUL-81 2BP2 0
JRNL AUTH B.W.DIJKSTRA,G.J.H.VANNES,K.H.KALK,N.P.BRANDENBURG, JRNL AUTH 2 W.G.J.HOL,J.DRENTH JRNL TITL THE STRUCTURE OF BOVINE PANCREATIC JRNL TITL 2 PROPHOSPHOLIPASE A2 AT 3.0 ANGSTROMS RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 38 793 1982 JRNL REFN ISSN 0108-7681
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.W.DIJKSTRA,K.H.KALK,W.G.J.HOL,J.DRENTH REMARK 1 TITL STRUCTURE OF BOVINE PANCREATIC PHOSPHOLIPASE A2 AT REMARK 1 TITL 2 1.7 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 147 97 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.W.DIJKSTRA,J.DRENTH,K.H.KALK REMARK 1 TITL ACTIVE SITE AND CATALYTIC MECHANISM OF REMARK 1 TITL 2 PHOSPHOLIPASE A2 REMARK 1 REF NATURE V. 289 604 1981 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.W.DIJKSTRA REMARK 1 TITL STRUCTURE AND MECHANISM OF PHOSPHOLIPASE A2 REMARK 1 REF THESIS 1980 REMARK 1 REFN ISSN 0012-4958 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.W.DIJKSTRA,J.DRENTH,K.H.KALK,P.VANDERMAELEN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE AND DISULFIDE BOND REMARK 1 TITL 2 CONNECTIONS IN BOVINE PANCREATIC PHOSPHOLIPASE A2 REMARK 1 REF J.MOL.BIOL. V. 124 53 1978 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1 TO 3 INCLUSIVE AND 62 TO REMARK 3 73 INCLUSIVE ARE VIRTUALLY INVISIBLE IN ELECTRON DENSITY MAPS REMARK 3 AND ARE PROBABLY DISORDERED. THE COORDINATES GIVEN BELOW FOR REMARK 3 THESE RESIDUES CONTAIN, THEREFORE, VERY LARGE ERRORS.
REMARK 4 REMARK 4 2BP2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.02667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.02667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.01333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE ZYMOGEN PROPHOSPHOLIPASE A2 CONTAINS SEVEN EXTRA REMARK 400 RESIDUES AT THE N-TERMINUS COMPARED WITH THE ACTIVE ENZYME REMARK 400 PHOSPHOLIPASE A2.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 LEU A -3 REMARK 465 ASN A -2 REMARK 465 SER A -1 REMARK 465 ARG A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 43 CG GLN A 46 1.73 REMARK 500 NH1 ARG A 43 CB GLN A 46 1.74 REMARK 500 CB ASN A 67 OG1 THR A 70 1.78 REMARK 500 O LYS A 62 CA VAL A 65 1.87 REMARK 500 OH TYR A 52 OD2 ASP A 99 1.92 REMARK 500 O SER A 60 CD1 LEU A 64 1.93 REMARK 500 O LYS A 62 N VAL A 65 2.01 REMARK 500 N ALA A 1 O ASN A 71 2.02 REMARK 500 OD1 ASN A 67 N THR A 70 2.05 REMARK 500 O ASP A 119 N LYS A 121 2.12 REMARK 500 O ALA A 55 CG LEU A 58 2.14 REMARK 500 OH TYR A 73 OD1 ASP A 99 2.18 REMARK 500 OD1 ASP A 119 N LYS A 121 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB VAL A 63 CG GLU A 114 2655 1.35 REMARK 500 CE1 HIS A 115 CD2 LEU A 64 3664 1.42 REMARK 500 CG2 VAL A 63 CD2 HIS A 115 2655 1.46 REMARK 500 CG2 VAL A 63 NE2 HIS A 115 2655 1.57 REMARK 500 CB GLU A 114 CG1 VAL A 63 3664 1.72 REMARK 500 CG GLU A 114 CG1 VAL A 63 3664 1.74 REMARK 500 CG GLU A 114 CA VAL A 63 3664 1.98 REMARK 500 CG HIS A 115 CG2 VAL A 63 3664 1.99 REMARK 500 CD2 LEU A 64 NE2 HIS A 115 2655 2.06 REMARK 500 CE1 HIS A 115 CG2 VAL A 63 3664 2.12 REMARK 500 OH TYR A 75 OE2 GLU A 87 5556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 3 NE1 TRP A 3 CE2 -0.098 REMARK 500 GLU A 114 CD GLU A 114 OE2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 4 N - CA - CB ANGL. DEV. = 12.9 DEGREES REMARK 500 GLN A 4 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 GLN A 4 CA - C - O ANGL. DEV. = -15.2 DEGREES REMARK 500 ILE A 13 CA - CB - CG2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ASN A 24 CA - CB - CG ANGL. DEV. = -19.2 DEGREES REMARK 500 TYR A 25 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 39 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 39 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 40 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 43 CD - NE - CZ ANGL. DEV. = 40.2 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLN A 46 CA - CB - CG ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP A 49 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLN A 54 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 LEU A 64 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 LEU A 64 CA - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 ASN A 67 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 ASN A 71 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ASN A 71 CA - CB - CG ANGL. DEV. = -19.7 DEGREES REMARK 500 CYS A 84 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 GLU A 87 OE1 - CD - OE2 ANGL. DEV. = 18.1 DEGREES REMARK 500 GLU A 87 CG - CD - OE1 ANGL. DEV. = -17.2 DEGREES REMARK 500 GLU A 92 OE1 - CD - OE2 ANGL. DEV. = 10.1 DEGREES REMARK 500 GLU A 92 CG - CD - OE1 ANGL. DEV. = -14.5 DEGREES REMARK 500 ASN A 97 CA - CB - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = 9.2 DEGREES REMARK 500 GLU A 114 OE1 - CD - OE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASN A 122 CA - CB - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 63.76 -157.01 REMARK 500 GLN A 54 -83.80 -34.88 REMARK 500 ALA A 55 -62.64 -23.55 REMARK 500 LYS A 62 -83.15 -53.63 REMARK 500 VAL A 63 26.20 -72.58 REMARK 500 LEU A 64 -10.18 -144.63 REMARK 500 VAL A 65 15.70 50.50 REMARK 500 ASP A 66 155.98 -43.86 REMARK 500 TYR A 69 -7.33 -54.73 REMARK 500 ASN A 72 61.76 -106.36 REMARK 500 TYR A 73 -169.61 -76.75 REMARK 500 ALA A 90 -64.86 -21.64 REMARK 500 CYS A 91 -78.15 -55.49 REMARK 500 GLU A 92 -7.60 -56.78 REMARK 500 ASN A 112 91.00 -60.04 REMARK 500 LYS A 120 -0.23 -43.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 21 10.54 REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 SEQUENCE NUMBERING IS THE SAME AS FOR THE ACTIVE ENZYME, REMARK 999 I. E. THE FIRST RESIDUE IS NUMBERED -7.
DBREF 2BP2 A -6 123 UNP P00593 PA21B_BOVIN 16 145
SEQRES 1 A 130 GLU ALA GLY LEU ASN SER ARG ALA LEU TRP GLN PHE ASN SEQRES 2 A 130 GLY MET ILE LYS CYS LYS ILE PRO SER SER GLU PRO LEU SEQRES 3 A 130 LEU ASP PHE ASN ASN TYR GLY CYS TYR CYS GLY LEU GLY SEQRES 4 A 130 GLY SER GLY THR PRO VAL ASP ASP LEU ASP ARG CYS CYS SEQRES 5 A 130 GLN THR HIS ASP ASN CYS TYR LYS GLN ALA LYS LYS LEU SEQRES 6 A 130 ASP SER CYS LYS VAL LEU VAL ASP ASN PRO TYR THR ASN SEQRES 7 A 130 ASN TYR SER TYR SER CYS SER ASN ASN GLU ILE THR CYS SEQRES 8 A 130 SER SER GLU ASN ASN ALA CYS GLU ALA PHE ILE CYS ASN SEQRES 9 A 130 CYS ASP ARG ASN ALA ALA ILE CYS PHE SER LYS VAL PRO SEQRES 10 A 130 TYR ASN LYS GLU HIS LYS ASN LEU ASP LYS LYS ASN CYS
HELIX 1 A GLN A 4 ILE A 13 1 10 HELIX 2 B GLU A 17 PHE A 22 1 6 HELIX 3 C ASP A 39 LEU A 58 1 20 HELIX 4 D LEU A 58 CYS A 61 1 4 HELIX 5 E ASN A 89 LYS A 108 1 20
SHEET 1 SH1 2 SER A 74 SER A 78 0 SHEET 2 SH1 2 GLU A 81 SER A 85 -1
SSBOND 1 CYS A 11 CYS A 77 1555 1555 2.07 SSBOND 2 CYS A 27 CYS A 123 1555 1555 2.08 SSBOND 3 CYS A 29 CYS A 45 1555 1555 1.99 SSBOND 4 CYS A 44 CYS A 105 1555 1555 2.08 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.08 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.11 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.02
CRYST1 46.950 46.950 102.040 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021299 0.012297 0.000000 0.00000
SCALE2 0.000000 0.024594 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009800 0.00000