10 20 30 40 50 60 70 80 2BNN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER OXIDOREDUCTASE 29-MAR-05 2BNN
TITLE THE STRUCTURE OF HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE FROM S. TITLE 2 WEDMORENIS IN COMPLEX WITH FOSFOMYCIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES WEDMORENSIS; SOURCE 3 ORGANISM_TAXID: 43759; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS OXIDOREDUCTASE, EPOXIDASE, CUPIN, HTH, CATION-DEPENDANT, ZINC, KEYWDS 2 FOSFOMYCIN OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.MCLUSKEY,S.CAMERON,W.N.HUNTER
REVDAT 6 28-JUN-17 2BNN 1 REMARK REVDAT 5 05-MAY-09 2BNN 1 TITLE REMARK REVDAT 4 24-FEB-09 2BNN 1 VERSN REVDAT 3 08-MAR-06 2BNN 1 REMARK REVDAT 2 12-OCT-05 2BNN 1 JRNL REVDAT 1 05-OCT-05 2BNN 0
JRNL AUTH K.MCLUSKEY,S.CAMERON,F.HAMMERSCHMIDT,W.N.HUNTER JRNL TITL STRUCTURE AND REACTIVITY OF HYDROXYPROPYLPHOSPHONIC ACID JRNL TITL 2 EPOXIDASE IN FOSFOMYCIN BIOSYNTHESIS BY A CATION- AND JRNL TITL 3 FLAVIN-DEPENDENT MECHANISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 14221 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16186494 JRNL DOI 10.1073/PNAS.0504314102
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.CAMERON,K.MCLUSKEY,R.CHAMBERLAYNE,I.HALLYBURTON,W.N.HUNTER REMARK 1 TITL INITIATING A CRYSTALLOGRAPHIC ANALYSIS OF RECOMBINANT REMARK 1 TITL 2 (S)-2-HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE FROM REMARK 1 TITL 3 STREPTOMYCES WEDMORENSIS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 534 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511089 REMARK 1 DOI 10.1107/S1744309105012376
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.477 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3039 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4139 ; 1.262 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 6.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;37.864 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;15.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;12.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2293 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1451 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2057 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 248 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 110 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1959 ; 1.453 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3092 ; 2.467 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1191 ; 4.788 ;10.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1041 ; 6.085 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 97-101 ARE DISORDERED IN SUBUNIT B
REMARK 4 REMARK 4 2BNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023058.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STARTING MODEL IS CURRENTLY BEING SUBMITTED AND HENCE HAS REMARK 200 NOT PDB-CODE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULPHATE, 100 MM TRIS REMARK 280 PH 7.5, PH 7.50
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.32600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.66300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.99450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.33150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 181.65750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.32600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.66300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.33150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.99450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 181.65750 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -254.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.26701 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 ARG B 97 REMARK 465 ASP B 98 REMARK 465 ASN B 99 REMARK 465 VAL B 100 REMARK 465 ASP B 101
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 -113.57 -97.05 REMARK 500 ALA A 114 70.47 -150.26 REMARK 500 HIS A 177 -3.70 57.65 REMARK 500 LYS A 186 115.28 -39.39 REMARK 500 ASP B 80 56.44 36.02 REMARK 500 ASP B 88 36.64 -98.30 REMARK 500 ALA B 114 72.30 -156.40 REMARK 500 LEU B 117 108.33 -58.18 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A2051 DISTANCE = 6.11 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 138 NE2 REMARK 620 2 GLU A 142 OE2 115.2 REMARK 620 3 HIS A 180 NE2 101.3 112.6 REMARK 620 4 FCN A1199 O3P 77.9 128.1 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 180 NE2 REMARK 620 2 HIS B 138 NE2 98.8 REMARK 620 3 FCN B1199 O 116.5 139.3 REMARK 620 4 FCN B1199 O3P 101.1 85.9 68.8 REMARK 620 5 GLU B 142 OE1 104.2 108.9 82.6 148.1 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FCN A 1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FCN B 1199
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZZ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE REMARK 900 RELATED ID: 1ZZ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATEFORM 1 REMARK 900 RELATED ID: 2BNM RELATED DB: PDB REMARK 900 THE STRUCTURE OF HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE FROM S. REMARK 900 WEDMORENIS. REMARK 900 RELATED ID: 1ZZ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATEFORM 2 REMARK 900 RELATED ID: 1ZZ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-HPPE REMARK 900 RELATED ID: 1ZZC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH TRIS BUFFER REMARK 900 RELATED ID: 1ZZB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH SUBSTRATE REMARK 900 RELATED ID: 2BNO RELATED DB: PDB REMARK 900 THE STRUCTURE OF HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE FROM S. REMARK 900 WEDMORENIS.
DBREF 2BNN A 1 198 UNP Q56185 Q56185_STRWE 1 198 DBREF 2BNN B 1 198 UNP Q56185 Q56185_STRWE 1 198
SEQRES 1 A 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 A 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 A 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 A 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 A 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 A 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 A 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 A 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 A 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 A 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 A 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 A 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 A 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 A 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 A 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 A 198 VAL ASN PHE SEQRES 1 B 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 B 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 B 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 B 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 B 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 B 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 B 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 B 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 B 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 B 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 B 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 B 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 B 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 B 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 B 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 B 198 VAL ASN PHE
HET FCN A1199 8 HET ZN A1200 1 HET FCN B1199 8 HET ZN B1200 1
HETNAM FCN FOSFOMYCIN HETNAM ZN ZINC ION
HETSYN FCN 1,2-EPOXYPROPYLPHOSPHONIC ACID
FORMUL 3 FCN 2(C3 H7 O4 P) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *243(H2 O)
HELIX 1 1 LYS A 5 VAL A 22 1 18 HELIX 2 2 ASP A 25 LEU A 33 1 9 HELIX 3 3 THR A 36 GLU A 44 1 9 HELIX 4 4 THR A 52 LEU A 63 1 12 HELIX 5 5 ILE A 67 THR A 71 5 5 HELIX 6 6 MET A 86 ARG A 90 5 5 HELIX 7 7 ASN A 128 ALA A 132 5 5 HELIX 8 8 THR B 6 VAL B 22 1 17 HELIX 9 9 ASP B 25 LEU B 32 1 8 HELIX 10 10 THR B 36 GLU B 44 1 9 HELIX 11 11 THR B 52 LEU B 63 1 12 HELIX 12 12 SER B 66 THR B 71 1 6 HELIX 13 13 MET B 86 ARG B 90 5 5 HELIX 14 14 ASN B 128 ALA B 132 5 5
SHEET 1 AA 6 ILE A 92 VAL A 96 0 SHEET 2 AA 6 ASP A 101 CYS A 107 -1 N TYR A 102 O GLY A 95 SHEET 3 AA 6 VAL A 118 VAL A 124 -1 O VAL A 121 N ASN A 106 SHEET 4 AA 6 ALA A 191 PHE A 198 -1 O ALA A 191 N VAL A 124 SHEET 5 AA 6 ASN A 141 GLU A 148 -1 O ASN A 141 N PHE A 198 SHEET 6 AA 6 SER A 171 VAL A 174 -1 O MET A 172 N LEU A 144 SHEET 1 AB 3 LYS A 162 PRO A 167 0 SHEET 2 AB 3 GLU A 150 TRP A 155 -1 O ILE A 151 N LEU A 166 SHEET 3 AB 3 HIS A 180 ALA A 184 -1 O ALA A 181 N LYS A 154 SHEET 1 BA 6 ILE B 92 LEU B 93 0 SHEET 2 BA 6 TYR B 103 CYS B 107 -1 O TYR B 105 N LEU B 93 SHEET 3 BA 6 VAL B 118 VAL B 124 -1 O VAL B 121 N ASN B 106 SHEET 4 BA 6 ALA B 191 PHE B 198 -1 O ALA B 191 N VAL B 124 SHEET 5 BA 6 ASN B 141 GLU B 148 -1 O ASN B 141 N PHE B 198 SHEET 6 BA 6 SER B 171 VAL B 174 -1 O MET B 172 N LEU B 144 SHEET 1 BB 3 LYS B 162 LEU B 166 0 SHEET 2 BB 3 ILE B 151 TRP B 155 -1 O ILE B 151 N LEU B 166 SHEET 3 BB 3 HIS B 180 ALA B 184 -1 O ALA B 181 N LYS B 154
LINK ZN ZN A1200 NE2 HIS A 138 1555 1555 2.17 LINK ZN ZN A1200 OE2 GLU A 142 1555 1555 2.04 LINK ZN ZN A1200 NE2 HIS A 180 1555 1555 2.11 LINK ZN ZN A1200 O3P FCN A1199 1555 1555 2.09 LINK ZN ZN B1200 NE2 HIS B 180 1555 1555 2.19 LINK ZN ZN B1200 NE2 HIS B 138 1555 1555 2.07 LINK ZN ZN B1200 O FCN B1199 1555 1555 2.69 LINK ZN ZN B1200 O3P FCN B1199 1555 1555 2.05 LINK ZN ZN B1200 OE1 GLU B 142 1555 1555 1.96
CISPEP 1 GLY B 95 VAL B 96 0 -2.17
SITE 1 AC1 4 HIS A 138 GLU A 142 HIS A 180 FCN A1199 SITE 1 AC2 4 HIS B 138 GLU B 142 HIS B 180 FCN B1199 SITE 1 AC3 11 ARG A 97 TYR A 105 ASN A 135 HIS A 138 SITE 2 AC3 11 GLU A 142 HIS A 180 PHE A 182 ALA A 195 SITE 3 AC3 11 ZN A1200 HOH A2123 LYS B 23 SITE 1 AC4 8 LYS A 23 TYR B 105 ASN B 135 HIS B 138 SITE 2 AC4 8 GLU B 142 HIS B 180 ZN B1200 HOH B2120
CRYST1 85.602 85.602 217.989 90.00 90.00 120.00 P 65 2 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011682 0.006745 0.000000 0.00000
SCALE2 0.000000 0.013489 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004587 0.00000
MTRIX1 1 -0.999930 0.005650 -0.010690 -4.21315 1
MTRIX2 1 -0.009130 -0.932200 0.361820 145.03496 1
MTRIX3 1 -0.007920 0.361890 0.932190 -26.93200 1