10 20 30 40 50 60 70 80 2BHL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 13-JAN-05 2BHL
TITLE X-RAY STRUCTURE OF HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE TITLE 2 (DELETION VARIANT) COMPLEXED WITH GLUCOSE-6-PHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: G6PD; COMPND 5 EC: 1.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE 25 N-TERMINAL RESIDUES HAVE BEEN COMPND 9 REMOVED AND THE FIRST RESIDUE IS VALINE, NOT HISTIDINE
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DF213; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTRC99A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A/DG6PD
KEYWDS OXIDOREDUCTASE,OXIDOREDUCTASE (CHOH(D)-NADP), KEYWDS 2 GLUCOSE METABOLISM
EXPDTA X-RAY DIFFRACTION
AUTHOR M.KOTAKA,S.GOVER,V.M.S.LAM,M.J.ADAMS
REVDAT 3 05-FEB-14 2BHL 1 HEADER KEYWDS REMARK VERSN REVDAT 3 2 MASTER REVDAT 2 24-FEB-09 2BHL 1 VERSN REVDAT 1 25-APR-05 2BHL 0
JRNL AUTH M.KOTAKA,S.GOVER,L.VANDEPUTTE-RUTTEN,S.W.N.AU, JRNL AUTH 2 V.M.S.LAM,M.J.ADAMS JRNL TITL STRUCTURAL STUDIES OF GLUCOSE-6-PHOSPHATE AND JRNL TITL 2 NADP+ BINDING TO HUMAN GLUCOSE-6-PHOSPHATE JRNL TITL 3 DEHYDROGENASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 495 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15858258 JRNL DOI 10.1107/S0907444905002350
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.N.AU,S.GOVER,V.M.S.LAM,M.J.ADAMS REMARK 1 TITL HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE: THE REMARK 1 TITL 2 CRYSTAL STRUCTURE REVEALS A STRUCTURAL NADP REMARK 1 TITL 3 MOLECULE AND PROVIDES INSIGHTS INTO ENZYME REMARK 1 TITL 4 DEFICIENCY REMARK 1 REF STRUCTURE V. 8 293 2000 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 10745013 REMARK 1 DOI 10.1016/S0969-2126(00)00104-0 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.W.N.AU,C.E.NAYLOR,S.GOVER,L.VANDEPUTTE-RUTTEN, REMARK 1 AUTH 2 D.A.SCOPES,P.J.MASON,L.LUZZATTO,V.M.S.LAM,M.J.ADAMS REMARK 1 TITL SOLUTION OF THE STRUCTURE OF TETRAMERIC HUMAN REMARK 1 TITL 2 GLUCOSE 6-PHOSPHATE DEHYDROGENASE BY MOLECULAR REMARK 1 TITL 3 REPLACEMENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 826 1999 REMARK 1 REFN STM ABCRE6 DK ISSN 0907-4449 REMARK 1 PMID 10089300 REMARK 1 DOI 10.1107/S0907444999000827
REMARK 2 REMARK 2 RESOLUTION. 2.9 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT BUSTER/TNT REMARK 3 AUTHORS : BLANC,ROVERSI,VONRHEIN,BRICOGNE,TRONRUD, REMARK 3 : TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.9 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 32261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.004 ; 2.0 ; 7998 REMARK 3 BOND ANGLES (DEGREES) : 0.953 ; 2.0 ; 10763 REMARK 3 TORSION ANGLES (DEGREES) : 19.29 ; 0 ; 4719 REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; 2.0 ; 213 REMARK 3 GENERAL PLANES (A) : 0.013 ; 5 ; 1166 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 1.048 ; 20 ; 7998 REMARK 3 BAD NON-BONDED CONTACTS (A) : 0.059 ; 5 ; 153 REMARK 3 IMPROPER TORSIONS (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 994 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 506 TO 515 WERE DISORDERED REMARK 3 AND NOT INCLUDED
REMARK 4 REMARK 4 2BHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-05. REMARK 100 THE PDBE ID CODE IS EBI-21966.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32261 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 69.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QKI CHAIN A, B REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.8 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.1 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.5; 0.2M MGCL2; REMARK 280 12% PEG 4000; 5% GLYCEROL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.96900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.96900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.77600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.76350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.77600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.76350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.96900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.77600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.76350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.96900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.77600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.76350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 179.53000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 506 REMARK 465 TYR A 507 REMARK 465 LYS A 508 REMARK 465 TRP A 509 REMARK 465 VAL A 510 REMARK 465 ASN A 511 REMARK 465 PRO A 512 REMARK 465 HIS A 513 REMARK 465 LYS A 514 REMARK 465 LEU A 515 REMARK 465 THR B 506 REMARK 465 TYR B 507 REMARK 465 LYS B 508 REMARK 465 TRP B 509 REMARK 465 VAL B 510 REMARK 465 ASN B 511 REMARK 465 PRO B 512 REMARK 465 HIS B 513 REMARK 465 LYS B 514 REMARK 465 LEU B 515
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 504 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 381 CG PHE B 381 CD2 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 -60.58 -123.95 REMARK 500 ALA A 71 -165.94 -163.42 REMARK 500 ARG A 72 -62.13 -95.63 REMARK 500 SER A 73 101.02 -44.65 REMARK 500 ARG A 74 107.54 -55.91 REMARK 500 ASN A 122 -80.69 -51.78 REMARK 500 SER A 123 -37.53 -33.27 REMARK 500 ALA A 141 45.44 -103.31 REMARK 500 SER A 157 -66.17 -139.39 REMARK 500 CYS A 158 32.52 -67.09 REMARK 500 ASN A 262 -84.50 -97.46 REMARK 500 HIS A 263 -70.33 -47.51 REMARK 500 SER A 281 -70.77 -36.65 REMARK 500 ASP A 324 32.96 -83.94 REMARK 500 PRO A 329 170.65 -47.19 REMARK 500 ALA A 361 36.23 72.17 REMARK 500 LEU A 362 -157.44 -96.78 REMARK 500 GLN A 383 -3.28 68.04 REMARK 500 SER A 418 -151.86 -142.20 REMARK 500 GLU A 419 149.30 -175.69 REMARK 500 ASN A 426 -64.12 -91.05 REMARK 500 HIS A 451 33.36 -95.71 REMARK 500 SER A 486 -171.21 -67.83 REMARK 500 LYS B 47 -62.48 -128.08 REMARK 500 HIS B 129 105.86 -57.42 REMARK 500 ALA B 141 44.87 -85.30 REMARK 500 TYR B 147 -61.36 -25.62 REMARK 500 SER B 157 -71.98 -89.27 REMARK 500 CYS B 158 20.48 -60.56 REMARK 500 ASN B 262 -89.31 -106.29 REMARK 500 SER B 281 -59.84 -20.41 REMARK 500 ALA B 300 6.72 -69.15 REMARK 500 MET B 411 46.57 -85.91 REMARK 500 ASN B 430 45.18 -94.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN B 28 24.8 L L OUTSIDE RANGE REMARK 500 CYS B 158 24.3 L L OUTSIDE RANGE REMARK 500 TYR B 308 24.3 L L OUTSIDE RANGE REMARK 500 GLU B 504 9.2 L D EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: PROCHECK, WITH IDENTIFICATION CORRESPONDING REMARK 650 TO THE 2.0A LEUCONOSTOC MESENTERODES STRUCTURE, 1DPG. THE BEND REMARK 650 AT LYS 47 IN HELIX A IS A CONSEQUENCE OF THE CONSERVED PRO 50.
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: PROCHECK WITH EXTENSION TAKEN WHERE REMARK 700 HYDROGEN BONDING INDICATES THAT THIS IS APPROPRIATE
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BG6 A1510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BG6 B1508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1507
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QKI RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN GLUCOSE 6- REMARK 900 PHOSPHATE DEHYDROGENASE (VARIANT CANTON R459L) REMARK 900 COMPLEXED WITH STRUCTURAL NADP+ REMARK 900 RELATED ID: 2BH9 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DELETION VARIANT OF REMARK 900 HUMAN GLUCOSE 6-PHOSPHATE DEHYDROGENASE REMARK 900 COMPLEXED WITH STRUCTURAL AND COENZYME NADP
DBREF 2BHL A 27 27 PDB 2BHL 2BHL 27 27 DBREF 2BHL A 28 515 UNP P11413 G6PD_HUMAN 27 514 DBREF 2BHL B 27 27 PDB 2BHL 2BHL 27 27 DBREF 2BHL B 28 515 UNP P11413 G6PD_HUMAN 27 514
SEQRES 1 A 489 VAL GLN SER ASP THR HIS ILE PHE ILE ILE MET GLY ALA SEQRES 2 A 489 SER GLY ASP LEU ALA LYS LYS LYS ILE TYR PRO THR ILE SEQRES 3 A 489 TRP TRP LEU PHE ARG ASP GLY LEU LEU PRO GLU ASN THR SEQRES 4 A 489 PHE ILE VAL GLY TYR ALA ARG SER ARG LEU THR VAL ALA SEQRES 5 A 489 ASP ILE ARG LYS GLN SER GLU PRO PHE PHE LYS ALA THR SEQRES 6 A 489 PRO GLU GLU LYS LEU LYS LEU GLU ASP PHE PHE ALA ARG SEQRES 7 A 489 ASN SER TYR VAL ALA GLY GLN TYR ASP ASP ALA ALA SER SEQRES 8 A 489 TYR GLN ARG LEU ASN SER HIS MET ASN ALA LEU HIS LEU SEQRES 9 A 489 GLY SER GLN ALA ASN ARG LEU PHE TYR LEU ALA LEU PRO SEQRES 10 A 489 PRO THR VAL TYR GLU ALA VAL THR LYS ASN ILE HIS GLU SEQRES 11 A 489 SER CYS MET SER GLN ILE GLY TRP ASN ARG ILE ILE VAL SEQRES 12 A 489 GLU LYS PRO PHE GLY ARG ASP LEU GLN SER SER ASP ARG SEQRES 13 A 489 LEU SER ASN HIS ILE SER SER LEU PHE ARG GLU ASP GLN SEQRES 14 A 489 ILE TYR ARG ILE ASP HIS TYR LEU GLY LYS GLU MET VAL SEQRES 15 A 489 GLN ASN LEU MET VAL LEU ARG PHE ALA ASN ARG ILE PHE SEQRES 16 A 489 GLY PRO ILE TRP ASN ARG ASP ASN ILE ALA CYS VAL ILE SEQRES 17 A 489 LEU THR PHE LYS GLU PRO PHE GLY THR GLU GLY ARG GLY SEQRES 18 A 489 GLY TYR PHE ASP GLU PHE GLY ILE ILE ARG ASP VAL MET SEQRES 19 A 489 GLN ASN HIS LEU LEU GLN MET LEU CYS LEU VAL ALA MET SEQRES 20 A 489 GLU LYS PRO ALA SER THR ASN SER ASP ASP VAL ARG ASP SEQRES 21 A 489 GLU LYS VAL LYS VAL LEU LYS CYS ILE SER GLU VAL GLN SEQRES 22 A 489 ALA ASN ASN VAL VAL LEU GLY GLN TYR VAL GLY ASN PRO SEQRES 23 A 489 ASP GLY GLU GLY GLU ALA THR LYS GLY TYR LEU ASP ASP SEQRES 24 A 489 PRO THR VAL PRO ARG GLY SER THR THR ALA THR PHE ALA SEQRES 25 A 489 ALA VAL VAL LEU TYR VAL GLU ASN GLU ARG TRP ASP GLY SEQRES 26 A 489 VAL PRO PHE ILE LEU ARG CYS GLY LYS ALA LEU ASN GLU SEQRES 27 A 489 ARG LYS ALA GLU VAL ARG LEU GLN PHE HIS ASP VAL ALA SEQRES 28 A 489 GLY ASP ILE PHE HIS GLN GLN CYS LYS ARG ASN GLU LEU SEQRES 29 A 489 VAL ILE ARG VAL GLN PRO ASN GLU ALA VAL TYR THR LYS SEQRES 30 A 489 MET MET THR LYS LYS PRO GLY MET PHE PHE ASN PRO GLU SEQRES 31 A 489 GLU SER GLU LEU ASP LEU THR TYR GLY ASN ARG TYR LYS SEQRES 32 A 489 ASN VAL LYS LEU PRO ASP ALA TYR GLU ARG LEU ILE LEU SEQRES 33 A 489 ASP VAL PHE CYS GLY SER GLN MET HIS PHE VAL ARG SER SEQRES 34 A 489 ASP GLU LEU ARG GLU ALA TRP ARG ILE PHE THR PRO LEU SEQRES 35 A 489 LEU HIS GLN ILE GLU LEU GLU LYS PRO LYS PRO ILE PRO SEQRES 36 A 489 TYR ILE TYR GLY SER ARG GLY PRO THR GLU ALA ASP GLU SEQRES 37 A 489 LEU MET LYS ARG VAL GLY PHE GLN TYR GLU GLY THR TYR SEQRES 38 A 489 LYS TRP VAL ASN PRO HIS LYS LEU SEQRES 1 B 489 VAL GLN SER ASP THR HIS ILE PHE ILE ILE MET GLY ALA SEQRES 2 B 489 SER GLY ASP LEU ALA LYS LYS LYS ILE TYR PRO THR ILE SEQRES 3 B 489 TRP TRP LEU PHE ARG ASP GLY LEU LEU PRO GLU ASN THR SEQRES 4 B 489 PHE ILE VAL GLY TYR ALA ARG SER ARG LEU THR VAL ALA SEQRES 5 B 489 ASP ILE ARG LYS GLN SER GLU PRO PHE PHE LYS ALA THR SEQRES 6 B 489 PRO GLU GLU LYS LEU LYS LEU GLU ASP PHE PHE ALA ARG SEQRES 7 B 489 ASN SER TYR VAL ALA GLY GLN TYR ASP ASP ALA ALA SER SEQRES 8 B 489 TYR GLN ARG LEU ASN SER HIS MET ASN ALA LEU HIS LEU SEQRES 9 B 489 GLY SER GLN ALA ASN ARG LEU PHE TYR LEU ALA LEU PRO SEQRES 10 B 489 PRO THR VAL TYR GLU ALA VAL THR LYS ASN ILE HIS GLU SEQRES 11 B 489 SER CYS MET SER GLN ILE GLY TRP ASN ARG ILE ILE VAL SEQRES 12 B 489 GLU LYS PRO PHE GLY ARG ASP LEU GLN SER SER ASP ARG SEQRES 13 B 489 LEU SER ASN HIS ILE SER SER LEU PHE ARG GLU ASP GLN SEQRES 14 B 489 ILE TYR ARG ILE ASP HIS TYR LEU GLY LYS GLU MET VAL SEQRES 15 B 489 GLN ASN LEU MET VAL LEU ARG PHE ALA ASN ARG ILE PHE SEQRES 16 B 489 GLY PRO ILE TRP ASN ARG ASP ASN ILE ALA CYS VAL ILE SEQRES 17 B 489 LEU THR PHE LYS GLU PRO PHE GLY THR GLU GLY ARG GLY SEQRES 18 B 489 GLY TYR PHE ASP GLU PHE GLY ILE ILE ARG ASP VAL MET SEQRES 19 B 489 GLN ASN HIS LEU LEU GLN MET LEU CYS LEU VAL ALA MET SEQRES 20 B 489 GLU LYS PRO ALA SER THR ASN SER ASP ASP VAL ARG ASP SEQRES 21 B 489 GLU LYS VAL LYS VAL LEU LYS CYS ILE SER GLU VAL GLN SEQRES 22 B 489 ALA ASN ASN VAL VAL LEU GLY GLN TYR VAL GLY ASN PRO SEQRES 23 B 489 ASP GLY GLU GLY GLU ALA THR LYS GLY TYR LEU ASP ASP SEQRES 24 B 489 PRO THR VAL PRO ARG GLY SER THR THR ALA THR PHE ALA SEQRES 25 B 489 ALA VAL VAL LEU TYR VAL GLU ASN GLU ARG TRP ASP GLY SEQRES 26 B 489 VAL PRO PHE ILE LEU ARG CYS GLY LYS ALA LEU ASN GLU SEQRES 27 B 489 ARG LYS ALA GLU VAL ARG LEU GLN PHE HIS ASP VAL ALA SEQRES 28 B 489 GLY ASP ILE PHE HIS GLN GLN CYS LYS ARG ASN GLU LEU SEQRES 29 B 489 VAL ILE ARG VAL GLN PRO ASN GLU ALA VAL TYR THR LYS SEQRES 30 B 489 MET MET THR LYS LYS PRO GLY MET PHE PHE ASN PRO GLU SEQRES 31 B 489 GLU SER GLU LEU ASP LEU THR TYR GLY ASN ARG TYR LYS SEQRES 32 B 489 ASN VAL LYS LEU PRO ASP ALA TYR GLU ARG LEU ILE LEU SEQRES 33 B 489 ASP VAL PHE CYS GLY SER GLN MET HIS PHE VAL ARG SER SEQRES 34 B 489 ASP GLU LEU ARG GLU ALA TRP ARG ILE PHE THR PRO LEU SEQRES 35 B 489 LEU HIS GLN ILE GLU LEU GLU LYS PRO LYS PRO ILE PRO SEQRES 36 B 489 TYR ILE TYR GLY SER ARG GLY PRO THR GLU ALA ASP GLU SEQRES 37 B 489 LEU MET LYS ARG VAL GLY PHE GLN TYR GLU GLY THR TYR SEQRES 38 B 489 LYS TRP VAL ASN PRO HIS LYS LEU
HET BG6 A1510 16 HET BG6 B1508 16 HET GOL A1506 6 HET GOL A1507 6 HET GOL A1508 6 HET GOL A1509 6 HET GOL B1506 6 HET GOL B1507 6
HETNAM BG6 BETA-D-GLUCOSE-6-PHOSPHATE HETNAM GOL GLYCEROL
FORMUL 3 BG6 2(C6 H13 O9 P) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 11 HOH *81(H2 O1)
HELIX 1 A ASP A 42 ARG A 57 1 16 HELIX 2 B1 VAL A 77 SER A 84 1 8 HELIX 3 B2 LYS A 97 PHE A 102 1 6 HELIX 4 C ALA A 115 ALA A 127 1 13 HELIX 5 D TYR A 147 GLU A 156 1 10 HELIX 6 E LEU A 177 LEU A 190 1 14 HELIX 7 F1 HIS A 201 GLY A 204 5 4 HELIX 8 F2 GLU A 206 PHE A 216 1 11 HELIX 9 H PHE A 250 PHE A 253 1 4 HELIX 10 I1 ILE A 255 VAL A 259 1 5 HELIX 11 I2 HIS A 263 ALA A 272 1 10 HELIX 12 J SER A 281 LEU A 292 1 12 HELIX 13 K GLU A 317 THR A 319 1 3 HELIX 14 L TYR A 424 ARG A 427 1 4 HELIX 15 M ALA A 436 CYS A 446 1 11 HELIX 16 N SER A 455 GLU A 475 1 21 HELIX 17 O THR A 490 VAL A 499 1 10 HELIX 18 A ASP B 42 ARG B 57 1 16 HELIX 19 B1 VAL B 77 SER B 84 1 8 HELIX 20 B2 LYS B 95 ALA B 103 1 9 HELIX 21 C ALA B 115 ALA B 127 1 13 HELIX 22 D PRO B 144 GLU B 156 1 13 HELIX 23 E LEU B 177 LEU B 190 1 14 HELIX 24 F1 HIS B 201 GLY B 204 5 4 HELIX 25 F2 GLU B 206 PHE B 216 1 11 HELIX 26 H GLY B 247 ASP B 251 1 5 HELIX 27 I1 ILE B 256 VAL B 259 1 4 HELIX 28 I2 HIS B 263 ALA B 272 1 10 HELIX 29 J SER B 281 LEU B 292 1 12 HELIX 30 K GLY B 316 THR B 319 1 4 HELIX 31 L TYR B 424 ARG B 427 1 4 HELIX 32 M ALA B 436 CYS B 446 1 11 HELIX 33 N SER B 455 LEU B 474 1 20 HELIX 34 O THR B 490 VAL B 499 1 10
SHEET 1 COA 6 ASN A 105 ALA A 109 0 SHEET 2 COA 6 THR A 65 ALA A 71 1 O ILE A 67 N SER A 106 SHEET 3 COA 6 HIS A 32 MET A 37 1 O HIS A 32 N PHE A 66 SHEET 4 COA 6 ASN A 135 LEU A 140 1 O ASN A 135 N ILE A 33 SHEET 5 COA 6 ASN A 165 VAL A 169 1 O ARG A 166 N PHE A 138 SHEET 6 COA 6 ILE A 196 ARG A 198 1 N TYR A 197 O ILE A 167 SHEET 1 DIA 9 PRO A 415 THR A 423 0 SHEET 2 DIA 9 ALA A 399 LYS A 407 -1 N MET A 404 O SER A 418 SHEET 3 DIA 9 GLU A 389 GLN A 395 -1 O VAL A 391 N TYR A 401 SHEET 4 DIA 9 LYS A 366 PHE A 373 -1 N VAL A 369 O ILE A 392 SHEET 5 DIA 9 ILE A 230 GLU A 239 -1 N CYS A 232 O GLN A 372 SHEET 6 DIA 9 PRO A 353 LYS A 360 1 N ARG A 357 O LEU A 235 SHEET 7 DIA 9 PHE A 337 TYR A 343 -1 N ALA A 338 O CYS A 358 SHEET 8 DIA 9 VAL A 303 VAL A 309 -1 N VAL A 304 O ALA A 339 SHEET 9 DIA 9 ILE A 480 ILE A 483 1 N ILE A 480 O LEU A 305 SHEET 1 COB 6 ASN B 105 ALA B 109 0 SHEET 2 COB 6 THR B 65 ALA B 71 1 O ILE B 67 N SER B 106 SHEET 3 COB 6 HIS B 32 MET B 37 1 O HIS B 32 N PHE B 66 SHEET 4 COB 6 ASN B 135 LEU B 140 1 O ASN B 135 N ILE B 33 SHEET 5 COB 6 ASN B 165 VAL B 169 1 O ARG B 166 N PHE B 138 SHEET 6 COB 6 ILE B 196 ARG B 198 1 N TYR B 197 O ILE B 167 SHEET 1 DIB 9 PRO B 415 THR B 423 0 SHEET 2 DIB 9 ALA B 399 LYS B 407 -1 N MET B 404 O SER B 418 SHEET 3 DIB 9 GLU B 389 GLN B 395 -1 O VAL B 391 N TYR B 401 SHEET 4 DIB 9 LYS B 366 PHE B 373 -1 N VAL B 369 O ILE B 392 SHEET 5 DIB 9 ILE B 230 LYS B 238 -1 N CYS B 232 O GLN B 372 SHEET 6 DIB 9 PRO B 353 GLY B 359 1 N ARG B 357 O LEU B 235 SHEET 7 DIB 9 PHE B 337 TYR B 343 -1 N ALA B 338 O CYS B 358 SHEET 8 DIB 9 VAL B 303 VAL B 309 -1 N VAL B 304 O ALA B 339 SHEET 9 DIB 9 ILE B 480 ILE B 483 1 N ILE B 480 O LEU B 305
CISPEP 1 LYS A 171 PRO A 172 0 1.93 CISPEP 2 GLN A 395 PRO A 396 0 0.36 CISPEP 3 LYS B 171 PRO B 172 0 3.21 CISPEP 4 GLN B 395 PRO B 396 0 -5.53
SITE 1 AC1 10 LYS A 171 HIS A 201 TYR A 202 LYS A 205 SITE 2 AC1 10 GLU A 239 ASP A 258 HIS A 263 LYS A 360 SITE 3 AC1 10 ARG A 365 GLN A 395 SITE 1 AC2 10 LYS B 171 HIS B 201 TYR B 202 LYS B 205 SITE 2 AC2 10 GLU B 239 ASP B 258 HIS B 263 LYS B 360 SITE 3 AC2 10 ARG B 365 GLN B 395 SITE 1 AC3 7 SER A 296 GLU A 297 VAL A 298 GLN A 299 SITE 2 AC3 7 ASN A 302 VAL A 341 TYR A 343 SITE 1 AC4 5 ALA A 300 VAL A 303 LEU A 305 GLN A 471 SITE 2 AC4 5 PRO A 477 SITE 1 AC5 5 GLU A 347 ARG B 215 PHE B 216 PHE B 221 SITE 2 AC5 5 TRP B 225 SITE 1 AC6 6 ARG A 215 PHE A 216 GLY A 222 TRP A 225 SITE 2 AC6 6 ARG A 348 GLU B 347 SITE 1 AC7 5 TRP B 54 ARG B 57 LYS B 89 LYS B 432 SITE 2 AC7 5 GLU B 438 SITE 1 AC8 4 GLY B 163 TRP B 164 ARG B 192 GLN B 195
CRYST1 117.552 179.527 137.938 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008507 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005570 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007250 0.00000
MTRIX1 1 -0.999110 -0.006780 -0.041660 35.44000 1
MTRIX2 1 -0.031910 -0.524640 0.850730 138.26100 1
MTRIX3 1 -0.027630 0.851300 0.523950 -76.29800 1