10 20 30 40 50 60 70 80 2BDZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 21-OCT-05 2BDZ
TITLE MEXICAIN FROM JACARATIA MEXICANA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEXICAIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.4.22.-
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JACARATIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 309130; SOURCE 4 OTHER_DETAILS: LATEX
KEYWDS MEXICAIN, CYSTEINE PROTEASE, PEPTIDASE_C1, PAPAIN-LIKE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.A.GAVIRA,M.C.OLIVER-SALVADOR,L.A.GONZALEZ-RAMIREZ,M.SORIANO-GARCIA, AUTHOR 2 J.M.GARCIA-RUIZ
REVDAT 3 09-MAR-11 2BDZ 1 REMARK REVDAT 2 24-FEB-09 2BDZ 1 VERSN REVDAT 1 03-OCT-06 2BDZ 0
JRNL AUTH J.A.GAVIRA,M.C.OLIVER-SALVADOR,L.A.GONZALEZ-RAMIREZ, JRNL AUTH 2 M.SORIANO-GARCIA,J.M.GARCIA-RUIZ JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF MEXICAIN FROM JACARATIA JRNL TITL 2 MEXICANA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.OLIVER-SALVADOR,L.A.GONZALEZ-RAMIREZ,J.A.GAVIRA, REMARK 1 AUTH 2 M.SORIANO-GARCIA,J.M.GARCIA-RUIZ REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS REMARK 1 TITL 2 OF MEXICAIN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 2058 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15502326 REMARK 1 DOI 10.1107/S0907444904021638
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 40977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.066 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6786 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9206 ; 1.092 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 844 ; 6.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;35.388 ;23.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1074 ;12.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.847 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 987 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5166 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3462 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4695 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 607 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4312 ; 1.235 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6742 ; 1.819 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2900 ; 1.300 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2464 ; 1.801 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLPROBITY, XTALVIEW WERE ALSO USED FOR REMARK 3 THE REFINEMENT.
REMARK 4 REMARK 4 2BDZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB034981.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2710 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.495 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: THE INITIAL MODEL WAS CALCULATED USING THE SWISS- REMARK 200 MODEL SERVER USING PROMODII FOR MODELLING AND GROMOS96 FOR ENERGY REMARK 200 MINIMIZATION (SCHWEDE ET AL., 2000). INITIAL MODELS PDB I.DS.: REMARK 200 1YAL, 1GEC, 1PPO, 1MEG AND 1PCI REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (W/V) PEGL 6000, 0.1 M CITRATE, REMARK 280 15 % (V/V) ETHANOLAMINE, PH 10.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.22700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS THE MONOMER. THE ASYMETRIC UNIT REMARK 300 CONTAINS FOUR BIOLOGICAL UNITS NAMED A,B,C AND D.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 213 REMARK 465 ARG A 214 REMARK 465 TYR B 213 REMARK 465 ARG B 214 REMARK 465 TYR C 213 REMARK 465 ARG C 214 REMARK 465 TYR D 213 REMARK 465 ARG D 214
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CD OE1 OE2 REMARK 470 ARG A 59 NE CZ NH1 NH2 REMARK 470 ARG A 84 CD NE CZ NH1 NH2 REMARK 470 LYS A 98 CD CE NZ REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 ARG A 139 CD NE CZ NH1 NH2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 168 CD CE NZ REMARK 470 LYS A 184 CD CE NZ REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 10 NZ REMARK 470 GLN B 44 CD OE1 NE2 REMARK 470 ARG B 59 NH1 NH2 REMARK 470 ARG B 84 CD NE CZ NH1 NH2 REMARK 470 ARG B 96 CZ NH1 NH2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 LYS B 111 CD CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 LYS B 168 CD CE NZ REMARK 470 LYS B 184 CD CE NZ REMARK 470 LYS B 190 NZ REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 GLU C 9 CD OE1 OE2 REMARK 470 ARG C 84 CD NE CZ NH1 NH2 REMARK 470 LYS C 101 CG CD CE NZ REMARK 470 LYS C 111 CD CE NZ REMARK 470 LYS C 168 NZ REMARK 470 LYS C 184 NZ REMARK 470 ARG C 195 NE CZ NH1 NH2 REMARK 470 TYR D 1 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 3 CG CD OE1 OE2 REMARK 470 ARG D 59 NH1 NH2 REMARK 470 ARG D 84 NE CZ NH1 NH2 REMARK 470 LYS D 98 NZ REMARK 470 LYS D 101 CG CD CE NZ REMARK 470 LYS D 145 CD CE NZ REMARK 470 LYS D 168 CG CD CE NZ REMARK 470 LYS D 190 CE NZ REMARK 470 ARG D 195 NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 150.32 -49.88 REMARK 500 HIS A 61 40.87 -107.11 REMARK 500 CYS A 153 143.80 -171.98 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E64 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E64 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E64 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE E64 D 504
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YAL RELATED DB: PDB REMARK 900 RELATED ID: 1GEC RELATED DB: PDB REMARK 900 RELATED ID: 1PPO RELATED DB: PDB REMARK 900 RELATED ID: 1MEG RELATED DB: PDB REMARK 900 RELATED ID: 1PCI RELATED DB: PDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMINOACIDS R58 AND T70 APPEAR IN THE DEPOSITED SEQUENCE REMARK 999 P84346 (NAME: MEX1_JACME) OF THE SWS DATA BASE AS Y58 REMARK 999 AND P70 RESPECTIVELY BUT THERE ARE CLEAR EVIDENCES FOR REMARK 999 THE CURRENT SUBSTITUTIONS POINTING TO SEQUENCIATION ERRORS.
DBREF 2BDZ A 1 214 UNP P84346 MEX1_JACME 1 214 DBREF 2BDZ B 1 214 UNP P84346 MEX1_JACME 1 214 DBREF 2BDZ C 1 214 UNP P84346 MEX1_JACME 1 214 DBREF 2BDZ D 1 214 UNP P84346 MEX1_JACME 1 214
SEQADV 2BDZ ARG A 58 UNP P84346 TYR 58 SEE REMARK 999 SEQADV 2BDZ THR A 70 UNP P84346 PRO 70 SEE REMARK 999 SEQADV 2BDZ ARG B 58 UNP P84346 TYR 58 SEE REMARK 999 SEQADV 2BDZ THR B 70 UNP P84346 PRO 70 SEE REMARK 999 SEQADV 2BDZ ARG C 58 UNP P84346 TYR 58 SEE REMARK 999 SEQADV 2BDZ THR C 70 UNP P84346 PRO 70 SEE REMARK 999 SEQADV 2BDZ ARG D 58 UNP P84346 TYR 58 SEE REMARK 999 SEQADV 2BDZ THR D 70 UNP P84346 PRO 70 SEE REMARK 999
SEQRES 1 A 214 TYR PRO GLU SER ILE ASP TRP ARG GLU LYS GLY ALA VAL SEQRES 2 A 214 THR PRO VAL LYS ASN GLN ASN PRO CYS GLY SER CYS TRP SEQRES 3 A 214 ALA PHE SER THR VAL ALA THR ILE GLU GLY ILE ASN LYS SEQRES 4 A 214 ILE ILE THR GLY GLN LEU ILE SER LEU SER GLU GLN GLU SEQRES 5 A 214 LEU LEU ASP CYS GLU ARG ARG SER HIS GLY CYS ASP GLY SEQRES 6 A 214 GLY TYR GLN THR THR SER LEU GLN TYR VAL VAL ASP ASN SEQRES 7 A 214 GLY VAL HIS THR GLU ARG GLU TYR PRO TYR GLU LYS LYS SEQRES 8 A 214 GLN GLY ARG CYS ARG ALA LYS ASP LYS LYS GLY PRO LYS SEQRES 9 A 214 VAL TYR ILE THR GLY TYR LYS TYR VAL PRO ALA ASN ASP SEQRES 10 A 214 GLU ILE SER LEU ILE GLN ALA ILE ALA ASN GLN PRO VAL SEQRES 11 A 214 SER VAL VAL THR ASP SER ARG GLY ARG GLY PHE GLN PHE SEQRES 12 A 214 TYR LYS GLY GLY ILE TYR GLU GLY PRO CYS GLY THR ASN SEQRES 13 A 214 THR ASP HIS ALA VAL THR ALA VAL GLY TYR GLY LYS THR SEQRES 14 A 214 TYR LEU LEU LEU LYS ASN SER TRP GLY PRO ASN TRP GLY SEQRES 15 A 214 GLU LYS GLY TYR ILE ARG ILE LYS ARG ALA SER GLY ARG SEQRES 16 A 214 SER LYS GLY THR CYS GLY VAL TYR THR SER SER PHE PHE SEQRES 17 A 214 PRO ILE LYS GLY TYR ARG SEQRES 1 B 214 TYR PRO GLU SER ILE ASP TRP ARG GLU LYS GLY ALA VAL SEQRES 2 B 214 THR PRO VAL LYS ASN GLN ASN PRO CYS GLY SER CYS TRP SEQRES 3 B 214 ALA PHE SER THR VAL ALA THR ILE GLU GLY ILE ASN LYS SEQRES 4 B 214 ILE ILE THR GLY GLN LEU ILE SER LEU SER GLU GLN GLU SEQRES 5 B 214 LEU LEU ASP CYS GLU ARG ARG SER HIS GLY CYS ASP GLY SEQRES 6 B 214 GLY TYR GLN THR THR SER LEU GLN TYR VAL VAL ASP ASN SEQRES 7 B 214 GLY VAL HIS THR GLU ARG GLU TYR PRO TYR GLU LYS LYS SEQRES 8 B 214 GLN GLY ARG CYS ARG ALA LYS ASP LYS LYS GLY PRO LYS SEQRES 9 B 214 VAL TYR ILE THR GLY TYR LYS TYR VAL PRO ALA ASN ASP SEQRES 10 B 214 GLU ILE SER LEU ILE GLN ALA ILE ALA ASN GLN PRO VAL SEQRES 11 B 214 SER VAL VAL THR ASP SER ARG GLY ARG GLY PHE GLN PHE SEQRES 12 B 214 TYR LYS GLY GLY ILE TYR GLU GLY PRO CYS GLY THR ASN SEQRES 13 B 214 THR ASP HIS ALA VAL THR ALA VAL GLY TYR GLY LYS THR SEQRES 14 B 214 TYR LEU LEU LEU LYS ASN SER TRP GLY PRO ASN TRP GLY SEQRES 15 B 214 GLU LYS GLY TYR ILE ARG ILE LYS ARG ALA SER GLY ARG SEQRES 16 B 214 SER LYS GLY THR CYS GLY VAL TYR THR SER SER PHE PHE SEQRES 17 B 214 PRO ILE LYS GLY TYR ARG SEQRES 1 C 214 TYR PRO GLU SER ILE ASP TRP ARG GLU LYS GLY ALA VAL SEQRES 2 C 214 THR PRO VAL LYS ASN GLN ASN PRO CYS GLY SER CYS TRP SEQRES 3 C 214 ALA PHE SER THR VAL ALA THR ILE GLU GLY ILE ASN LYS SEQRES 4 C 214 ILE ILE THR GLY GLN LEU ILE SER LEU SER GLU GLN GLU SEQRES 5 C 214 LEU LEU ASP CYS GLU ARG ARG SER HIS GLY CYS ASP GLY SEQRES 6 C 214 GLY TYR GLN THR THR SER LEU GLN TYR VAL VAL ASP ASN SEQRES 7 C 214 GLY VAL HIS THR GLU ARG GLU TYR PRO TYR GLU LYS LYS SEQRES 8 C 214 GLN GLY ARG CYS ARG ALA LYS ASP LYS LYS GLY PRO LYS SEQRES 9 C 214 VAL TYR ILE THR GLY TYR LYS TYR VAL PRO ALA ASN ASP SEQRES 10 C 214 GLU ILE SER LEU ILE GLN ALA ILE ALA ASN GLN PRO VAL SEQRES 11 C 214 SER VAL VAL THR ASP SER ARG GLY ARG GLY PHE GLN PHE SEQRES 12 C 214 TYR LYS GLY GLY ILE TYR GLU GLY PRO CYS GLY THR ASN SEQRES 13 C 214 THR ASP HIS ALA VAL THR ALA VAL GLY TYR GLY LYS THR SEQRES 14 C 214 TYR LEU LEU LEU LYS ASN SER TRP GLY PRO ASN TRP GLY SEQRES 15 C 214 GLU LYS GLY TYR ILE ARG ILE LYS ARG ALA SER GLY ARG SEQRES 16 C 214 SER LYS GLY THR CYS GLY VAL TYR THR SER SER PHE PHE SEQRES 17 C 214 PRO ILE LYS GLY TYR ARG SEQRES 1 D 214 TYR PRO GLU SER ILE ASP TRP ARG GLU LYS GLY ALA VAL SEQRES 2 D 214 THR PRO VAL LYS ASN GLN ASN PRO CYS GLY SER CYS TRP SEQRES 3 D 214 ALA PHE SER THR VAL ALA THR ILE GLU GLY ILE ASN LYS SEQRES 4 D 214 ILE ILE THR GLY GLN LEU ILE SER LEU SER GLU GLN GLU SEQRES 5 D 214 LEU LEU ASP CYS GLU ARG ARG SER HIS GLY CYS ASP GLY SEQRES 6 D 214 GLY TYR GLN THR THR SER LEU GLN TYR VAL VAL ASP ASN SEQRES 7 D 214 GLY VAL HIS THR GLU ARG GLU TYR PRO TYR GLU LYS LYS SEQRES 8 D 214 GLN GLY ARG CYS ARG ALA LYS ASP LYS LYS GLY PRO LYS SEQRES 9 D 214 VAL TYR ILE THR GLY TYR LYS TYR VAL PRO ALA ASN ASP SEQRES 10 D 214 GLU ILE SER LEU ILE GLN ALA ILE ALA ASN GLN PRO VAL SEQRES 11 D 214 SER VAL VAL THR ASP SER ARG GLY ARG GLY PHE GLN PHE SEQRES 12 D 214 TYR LYS GLY GLY ILE TYR GLU GLY PRO CYS GLY THR ASN SEQRES 13 D 214 THR ASP HIS ALA VAL THR ALA VAL GLY TYR GLY LYS THR SEQRES 14 D 214 TYR LEU LEU LEU LYS ASN SER TRP GLY PRO ASN TRP GLY SEQRES 15 D 214 GLU LYS GLY TYR ILE ARG ILE LYS ARG ALA SER GLY ARG SEQRES 16 D 214 SER LYS GLY THR CYS GLY VAL TYR THR SER SER PHE PHE SEQRES 17 D 214 PRO ILE LYS GLY TYR ARG
HET E64 A 501 25 HET E64 B 502 25 HET E64 C 503 25 HET E64 D 504 25
HETNAM E64 N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO- HETNAM 2 E64 BUTYL]-GUANIDINE
FORMUL 5 E64 4(C15 H30 N5 O5 1+) FORMUL 9 HOH *379(H2 O)
HELIX 1 1 SER A 24 GLY A 43 1 20 HELIX 2 2 SER A 49 GLU A 57 1 9 HELIX 3 3 HIS A 61 GLY A 65 5 5 HELIX 4 4 TYR A 67 GLY A 79 1 13 HELIX 5 5 ASP A 117 GLN A 128 1 12 HELIX 6 6 GLY A 138 PHE A 143 1 6 HELIX 7 7 GLY A 198 VAL A 202 5 5 HELIX 8 8 SER B 24 GLY B 43 1 20 HELIX 9 9 SER B 49 GLU B 57 1 9 HELIX 10 10 HIS B 61 GLY B 65 5 5 HELIX 11 11 TYR B 67 GLY B 79 1 13 HELIX 12 12 ARG B 96 LYS B 100 5 5 HELIX 13 13 ASP B 117 GLN B 128 1 12 HELIX 14 14 GLY B 138 PHE B 143 1 6 HELIX 15 15 GLY B 198 VAL B 202 5 5 HELIX 16 16 SER C 24 GLY C 43 1 20 HELIX 17 17 SER C 49 GLU C 57 1 9 HELIX 18 18 HIS C 61 GLY C 65 5 5 HELIX 19 19 TYR C 67 GLY C 79 1 13 HELIX 20 20 ASP C 117 GLN C 128 1 12 HELIX 21 21 GLY C 138 PHE C 143 1 6 HELIX 22 22 GLY C 198 VAL C 202 5 5 HELIX 23 23 SER D 24 GLY D 43 1 20 HELIX 24 24 SER D 49 GLU D 57 1 9 HELIX 25 25 HIS D 61 GLY D 65 5 5 HELIX 26 26 TYR D 67 GLY D 79 1 13 HELIX 27 27 ARG D 96 LYS D 100 5 5 HELIX 28 28 ASP D 117 GLN D 128 1 12 HELIX 29 29 GLY D 138 PHE D 143 1 6 HELIX 30 30 GLY D 198 VAL D 202 5 5
SHEET 1 A 3 ILE A 5 ASP A 6 0 SHEET 2 A 3 HIS A 159 TYR A 166 -1 O TYR A 166 N ILE A 5 SHEET 3 A 3 VAL A 130 THR A 134 -1 N VAL A 132 O VAL A 161 SHEET 1 B 5 ILE A 5 ASP A 6 0 SHEET 2 B 5 HIS A 159 TYR A 166 -1 O TYR A 166 N ILE A 5 SHEET 3 B 5 TYR A 170 LYS A 174 -1 O LYS A 174 N THR A 162 SHEET 4 B 5 TYR A 186 LYS A 190 -1 O ILE A 189 N LEU A 171 SHEET 5 B 5 ILE A 148 TYR A 149 1 N TYR A 149 O ARG A 188 SHEET 1 C 2 VAL A 80 HIS A 81 0 SHEET 2 C 2 LYS A 104 VAL A 105 -1 O VAL A 105 N VAL A 80 SHEET 1 D 2 GLY A 109 VAL A 113 0 SHEET 2 D 2 SER A 206 ILE A 210 -1 O ILE A 210 N GLY A 109 SHEET 1 E 3 ILE B 5 ASP B 6 0 SHEET 2 E 3 HIS B 159 TYR B 166 -1 O TYR B 166 N ILE B 5 SHEET 3 E 3 VAL B 130 THR B 134 -1 N VAL B 130 O ALA B 163 SHEET 1 F 5 ILE B 5 ASP B 6 0 SHEET 2 F 5 HIS B 159 TYR B 166 -1 O TYR B 166 N ILE B 5 SHEET 3 F 5 TYR B 170 LYS B 174 -1 O LYS B 174 N THR B 162 SHEET 4 F 5 TYR B 186 LYS B 190 -1 O ILE B 187 N LEU B 173 SHEET 5 F 5 ILE B 148 TYR B 149 1 N TYR B 149 O ARG B 188 SHEET 1 G 2 GLY B 109 TYR B 112 0 SHEET 2 G 2 PHE B 207 ILE B 210 -1 O ILE B 210 N GLY B 109 SHEET 1 H 3 ILE C 5 ASP C 6 0 SHEET 2 H 3 HIS C 159 TYR C 166 -1 O TYR C 166 N ILE C 5 SHEET 3 H 3 VAL C 130 THR C 134 -1 N VAL C 130 O ALA C 163 SHEET 1 I 5 ILE C 5 ASP C 6 0 SHEET 2 I 5 HIS C 159 TYR C 166 -1 O TYR C 166 N ILE C 5 SHEET 3 I 5 TYR C 170 LYS C 174 -1 O LYS C 174 N THR C 162 SHEET 4 I 5 TYR C 186 LYS C 190 -1 O ILE C 189 N LEU C 171 SHEET 5 I 5 ILE C 148 TYR C 149 1 N TYR C 149 O LYS C 190 SHEET 1 J 2 GLY C 109 TYR C 112 0 SHEET 2 J 2 PHE C 207 ILE C 210 -1 O PHE C 208 N LYS C 111 SHEET 1 K 3 ILE D 5 ASP D 6 0 SHEET 2 K 3 HIS D 159 TYR D 166 -1 O TYR D 166 N ILE D 5 SHEET 3 K 3 VAL D 130 THR D 134 -1 N VAL D 130 O ALA D 163 SHEET 1 L 5 ILE D 5 ASP D 6 0 SHEET 2 L 5 HIS D 159 TYR D 166 -1 O TYR D 166 N ILE D 5 SHEET 3 L 5 TYR D 170 LYS D 174 -1 O LYS D 174 N THR D 162 SHEET 4 L 5 TYR D 186 LYS D 190 -1 O ILE D 187 N LEU D 173 SHEET 5 L 5 ILE D 148 TYR D 149 1 N TYR D 149 O ARG D 188 SHEET 1 M 2 GLY D 109 TYR D 112 0 SHEET 2 M 2 PHE D 207 ILE D 210 -1 O ILE D 210 N GLY D 109
SSBOND 1 CYS A 22 CYS A 63 1555 1555 2.02 SSBOND 2 CYS A 56 CYS A 95 1555 1555 2.02 SSBOND 3 CYS A 153 CYS A 200 1555 1555 2.02 SSBOND 4 CYS B 22 CYS B 63 1555 1555 2.03 SSBOND 5 CYS B 56 CYS B 95 1555 1555 2.05 SSBOND 6 CYS B 153 CYS B 200 1555 1555 2.03 SSBOND 7 CYS C 22 CYS C 63 1555 1555 2.00 SSBOND 8 CYS C 56 CYS C 95 1555 1555 2.03 SSBOND 9 CYS C 153 CYS C 200 1555 1555 2.06 SSBOND 10 CYS D 22 CYS D 63 1555 1555 2.03 SSBOND 11 CYS D 56 CYS D 95 1555 1555 2.04 SSBOND 12 CYS D 153 CYS D 200 1555 1555 2.05
LINK C2 E64 A 501 SG CYS A 25 1555 1555 2.33 LINK C2 E64 B 502 SG CYS B 25 1555 1555 2.08 LINK C2 E64 C 503 SG CYS C 25 1555 1555 2.28 LINK C2 E64 D 504 SG CYS D 25 1555 1555 2.14
CISPEP 1 ASN A 20 PRO A 21 0 3.27 CISPEP 2 GLY A 151 PRO A 152 0 1.51 CISPEP 3 ASN B 20 PRO B 21 0 0.22 CISPEP 4 GLY B 151 PRO B 152 0 3.65 CISPEP 5 ASN C 20 PRO C 21 0 1.12 CISPEP 6 GLY C 151 PRO C 152 0 4.49 CISPEP 7 ASN D 20 PRO D 21 0 0.07 CISPEP 8 GLY D 151 PRO D 152 0 -3.42
SITE 1 AC1 18 GLN A 19 GLY A 23 SER A 24 CYS A 25 SITE 2 AC1 18 TRP A 26 ASP A 64 GLY A 65 GLY A 66 SITE 3 AC1 18 VAL A 133 THR A 157 ASP A 158 HIS A 159 SITE 4 AC1 18 HOH A1101 HOH A1132 HOH A1371 ASN B 180 SITE 5 AC1 18 GLN D 92 GLY D 93 SITE 1 AC2 15 ASN A 180 GLN B 19 GLY B 23 SER B 24 SITE 2 AC2 15 CYS B 25 TRP B 26 ASP B 64 GLY B 65 SITE 3 AC2 15 GLY B 66 THR B 157 ASP B 158 HIS B 159 SITE 4 AC2 15 HOH B1018 HOH B1310 HOH B1372 SITE 1 AC3 13 GLN C 19 GLY C 23 SER C 24 CYS C 25 SITE 2 AC3 13 TRP C 26 ASP C 64 GLY C 65 GLY C 66 SITE 3 AC3 13 ASP C 158 HIS C 159 HOH C1068 HOH C1258 SITE 4 AC3 13 HOH C1347 SITE 1 AC4 17 LYS A 91 GLN A 92 GLY A 93 GLN D 19 SITE 2 AC4 17 GLY D 23 SER D 24 CYS D 25 TRP D 26 SITE 3 AC4 17 ASP D 64 GLY D 65 GLY D 66 VAL D 133 SITE 4 AC4 17 THR D 157 ASP D 158 HIS D 159 HOH D1040 SITE 5 AC4 17 HOH D1160
CRYST1 57.356 90.454 80.391 90.00 92.64 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017430 0.000000 0.000800 0.00000
SCALE2 0.000000 0.011060 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012450 0.00000