10 20 30 40 50 60 70 80 2BBP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 17-OCT-05 2BBP
TITLE NMR STRUCTURES OF THE PEPTIDE LINKED TO THE GENOME (VPG) OF TITLE 2 POLIOVIRUS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME LINKED PROTEIN VPG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-22; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMAN SOURCE 4 POLIOVIRUS SEROTYPE 1.
KEYWDS VPG, RNA TRANSCRIPTION PRIMER, FLEXIBLE STRUCTURE, VIRAL KEYWDS 2 POLYMERASE, PICORNAVIRUS, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR C.H.SCHEIN,N.OEZGUEN
REVDAT 3 24-FEB-09 2BBP 1 VERSN REVDAT 2 04-JUL-06 2BBP 1 JRNL REVDAT 1 28-MAR-06 2BBP 0
JRNL AUTH C.H.SCHEIN,N.OEZGUEN,D.E.VOLK,R.GARIMELLA,A.PAUL, JRNL AUTH 2 W.BRAUN JRNL TITL NMR STRUCTURE OF THE VIRAL PEPTIDE LINKED TO THE JRNL TITL 2 GENOME (VPG) OF POLIOVIRUS. JRNL REF PEPTIDES V. 27 1676 2006 JRNL REFN ISSN 0196-9781 JRNL PMID 16540201 JRNL DOI 10.1016/J.PEPTIDES.2006.01.018
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.H.SCHEIN,D.E.VOLK,N.OEZGUEN,A.PAUL REMARK 1 TITL NOVEL, STRUCTURE-BASED MECHANISM FOR URIDYLYLATION REMARK 1 TITL 2 OF THE GENOME-LINKED PEPTIDE (VPG) OF REMARK 1 TITL 3 PICORNAVIRUSES REMARK 1 REF PROTEINS 2006 REMARK 1 REFN ESSN 1097-0134 REMARK 1 PMID 16498624 REMARK 1 DOI 10.1002/PROT.20891
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIAMOD 2.2 REMARK 3 AUTHORS : GUENTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT OF THE NOE ASSIGNMENT IS REMARK 3 PERFORMED ITERATIVELY. NOAH PASSES GEOMETRICAL CONSTRAINTS REMARK 3 DERIVED FROM THE NOE LIST TO DIAMOD. DIAMOD CALCULATES A REMARK 3 BUNDLE OF STRUCTURES WITH LEAST VIOLATION OF THE CONSTRAINTS. REMARK 3 THE NEW BUNDLE OF STRUCTURES IS THE BASIS FOR REFINEMENT OF REMARK 3 THE ASSIGNMENTS IN NOAH.
REMARK 4 REMARK 4 2BBP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB034912.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 3.7 MM PEPTIDE, 10 MM NA REMARK 210 PHOSPHATE BUFFER, PH 7.2, DSS, REMARK 210 10% D20, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NOAH 2.0, DIAMOD 2.2, FELIX REMARK 210 METHOD USED : AUTOMATIC NOE ASSIGNMENT IN REMARK 210 COMBINATION WITH DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -61.18 -157.39 REMARK 500 1 TYR A 3 91.49 49.36 REMARK 500 1 ASN A 8 -46.92 -167.26 REMARK 500 1 LYS A 9 143.06 -173.34 REMARK 500 1 LYS A 10 96.67 -17.75 REMARK 500 1 PRO A 11 -73.54 -74.97 REMARK 500 1 THR A 15 86.61 -154.80 REMARK 500 1 ARG A 17 73.51 34.94 REMARK 500 1 THR A 18 -36.06 -150.36 REMARK 500 2 TYR A 3 90.23 12.45 REMARK 500 2 THR A 4 73.26 -112.15 REMARK 500 2 ASN A 8 -47.36 -166.83 REMARK 500 2 LYS A 10 98.04 -22.18 REMARK 500 2 PRO A 11 -71.37 -74.95 REMARK 500 2 THR A 15 86.53 -150.77 REMARK 500 2 THR A 18 -35.68 -143.88 REMARK 500 3 TYR A 3 76.01 49.01 REMARK 500 3 ASN A 8 -46.15 -168.26 REMARK 500 3 LYS A 10 98.14 -23.18 REMARK 500 3 ASN A 12 -43.84 -170.51 REMARK 500 3 THR A 15 79.13 55.56 REMARK 500 3 ILE A 16 45.61 39.10 REMARK 500 3 ARG A 17 70.53 37.08 REMARK 500 3 THR A 18 -25.54 -148.83 REMARK 500 4 ALA A 2 -51.68 -163.05 REMARK 500 4 TYR A 3 91.93 52.09 REMARK 500 4 ASN A 8 -47.00 -169.29 REMARK 500 4 LYS A 10 98.37 -21.86 REMARK 500 4 PRO A 11 -70.26 -75.05 REMARK 500 4 THR A 15 86.50 -154.30 REMARK 500 4 ARG A 17 65.06 39.52 REMARK 500 4 THR A 18 -36.30 -140.91 REMARK 500 5 TYR A 3 88.66 44.50 REMARK 500 5 ASN A 8 -48.15 -168.69 REMARK 500 5 LYS A 10 97.90 -21.61 REMARK 500 5 PRO A 11 -72.20 -75.01 REMARK 500 5 THR A 18 -37.93 -143.65 REMARK 500 5 LYS A 20 -98.89 -130.06 REMARK 500 5 VAL A 21 -58.76 -159.71 REMARK 500 6 TYR A 3 53.46 175.84 REMARK 500 6 THR A 4 77.22 -106.35 REMARK 500 6 ASN A 8 -48.99 -168.31 REMARK 500 6 LYS A 10 98.45 -20.30 REMARK 500 6 PRO A 11 -70.21 -74.93 REMARK 500 6 LYS A 20 73.92 -116.07 REMARK 500 7 ALA A 2 115.92 68.19 REMARK 500 7 TYR A 3 -27.31 -173.11 REMARK 500 7 LEU A 6 40.73 -149.64 REMARK 500 7 ASN A 8 -32.81 -167.58 REMARK 500 7 LYS A 10 101.36 -29.87 REMARK 500 8 TYR A 3 86.50 48.50 REMARK 500 8 LEU A 6 57.15 36.26 REMARK 500 8 ASN A 8 -54.06 -169.00 REMARK 500 8 LYS A 9 140.18 178.03 REMARK 500 8 LYS A 10 90.41 -10.42 REMARK 500 8 THR A 15 85.91 -150.06 REMARK 500 8 THR A 18 -37.62 -145.75 REMARK 500 9 ALA A 2 115.86 68.34 REMARK 500 9 TYR A 3 -27.29 -173.13 REMARK 500 9 LEU A 6 40.83 -149.65 REMARK 500 9 ASN A 8 -32.82 -167.54 REMARK 500 9 LYS A 10 101.34 -29.80 REMARK 500 10 TYR A 3 86.49 48.50 REMARK 500 10 LEU A 6 57.14 36.29 REMARK 500 10 ASN A 8 -54.04 -169.09 REMARK 500 10 LYS A 9 140.20 178.06 REMARK 500 10 LYS A 10 90.44 -10.47 REMARK 500 10 THR A 15 85.98 -150.03 REMARK 500 10 THR A 18 -37.55 -145.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BBL RELATED DB: PDB REMARK 900 NMR STRUCTURES OF THE PEPTIDE LINKED TO THE GENOME (VPG) OF REMARK 900 POLIOVIRUS IN A STABILIZING SOLVENT
DBREF 2BBP A 1 22 UNP P03300 POLG_POL1M 1544 1565
SEQRES 1 A 22 GLY ALA TYR THR GLY LEU PRO ASN LYS LYS PRO ASN VAL SEQRES 2 A 22 PRO THR ILE ARG THR ALA LYS VAL GLN
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000