10 20 30 40 50 60 70 80 2B6U - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 03-OCT-05 2B6U
TITLE HOMOLOGY MODEL OF THE HUMAN P2Y13 RECEPTOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE G-PROTEIN COUPLED RECEPTOR 86; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P2Y PURINOCEPTOR 13, P2Y13
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN
KEYWDS P2Y, G-PROTEIN COUPLED RECEPTOR, TRANSMEMBRANE, NUCLEOTIDE R
EXPDTA THEORETICAL MODEL
AUTHOR S.COSTANZI
REVDAT 1 01-NOV-05 2B6U 0
JRNL AUTH S.COSTANZI,L.MAMEDOVA,Z.G.GAO,K.A.JACOBSON JRNL TITL ARCHITECTURE OF P2Y NUCLEOTIDE RECEPTORS: JRNL TITL 2 STRUCTURAL COMPARISON BASED ON SEQUENCE ANALYSIS, JRNL TITL 3 MUTAGENESIS AND HOMOLOGY MODELING JRNL REF J.MED.CHEM. V. 47 5393 2004 JRNL REFN ASTM JMCMAR US ISSN 0022-2623
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2B6U COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-2005. REMARK 100 THE RCSB ID CODE IS RCSB034747.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THEORETICAL MODEL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 MET A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 PHE A 9 REMARK 465 ASN A 10 REMARK 465 ARG A 11 REMARK 465 GLU A 305 REMARK 465 LYS A 306 REMARK 465 LEU A 307 REMARK 465 PRO A 308 REMARK 465 CYS A 309 REMARK 465 MET A 310 REMARK 465 GLN A 311 REMARK 465 GLY A 312 REMARK 465 ARG A 313 REMARK 465 LYS A 314 REMARK 465 THR A 315 REMARK 465 THR A 316 REMARK 465 ALA A 317 REMARK 465 SER A 318 REMARK 465 SER A 319 REMARK 465 GLN A 320 REMARK 465 GLU A 321 REMARK 465 ASN A 322 REMARK 465 HIS A 323 REMARK 465 SER A 324 REMARK 465 SER A 325 REMARK 465 GLN A 326 REMARK 465 THR A 327 REMARK 465 ASP A 328 REMARK 465 ASN A 329 REMARK 465 ILE A 330 REMARK 465 THR A 331 REMARK 465 LEU A 332 REMARK 465 GLY A 333
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -31.35 78.90 REMARK 500 ALA A 86 -47.15 134.24 REMARK 500 ARG A 91 -95.20 58.51 REMARK 500 ASN A 130 -46.26 81.57 REMARK 500 PHE A 250 -59.61 100.96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 52 SER A 53 146.55 REMARK 500 SER A 53 SER A 54 140.07 REMARK 500 LYS A 212 LYS A 213 149.90
DBREF 2B6U A 1 333 UNP Q9BPV8 GPR86_HUMAN 1 333
SEQRES 1 A 333 MET ASN THR THR VAL MET GLN GLY PHE ASN ARG SER GLU SEQRES 2 A 333 ARG CYS PRO ARG ASP THR ARG ILE VAL GLN LEU VAL PHE SEQRES 3 A 333 PRO ALA LEU TYR THR VAL VAL PHE LEU THR GLY ILE LEU SEQRES 4 A 333 LEU ASN THR LEU ALA LEU TRP VAL PHE VAL HIS ILE PRO SEQRES 5 A 333 SER SER SER THR PHE ILE ILE TYR LEU LYS ASN THR LEU SEQRES 6 A 333 VAL ALA ASP LEU ILE MET THR LEU MET LEU PRO PHE LYS SEQRES 7 A 333 ILE LEU SER ASP SER HIS LEU ALA PRO TRP GLN LEU ARG SEQRES 8 A 333 ALA PHE VAL CYS ARG PHE SER SER VAL ILE PHE TYR GLU SEQRES 9 A 333 THR MET TYR VAL GLY ILE VAL LEU LEU GLY LEU ILE ALA SEQRES 10 A 333 PHE ASP ARG PHE LEU LYS ILE ILE ARG PRO LEU ARG ASN SEQRES 11 A 333 ILE PHE LEU LYS LYS PRO VAL PHE ALA LYS THR VAL SER SEQRES 12 A 333 ILE PHE ILE TRP PHE PHE LEU PHE PHE ILE SER LEU PRO SEQRES 13 A 333 ASN MET ILE LEU SER ASN LYS GLU ALA THR PRO SER SER SEQRES 14 A 333 VAL LYS LYS CYS ALA SER LEU LYS GLY PRO LEU GLY LEU SEQRES 15 A 333 LYS TRP HIS GLN MET VAL ASN ASN ILE CYS GLN PHE ILE SEQRES 16 A 333 PHE TRP THR VAL PHE ILE LEU MET LEU VAL PHE TYR VAL SEQRES 17 A 333 VAL ILE ALA LYS LYS VAL TYR ASP SER TYR ARG LYS SER SEQRES 18 A 333 LYS SER LYS ASP ARG LYS ASN ASN LYS LYS LEU GLU GLY SEQRES 19 A 333 LYS VAL PHE VAL VAL VAL ALA VAL PHE PHE VAL CYS PHE SEQRES 20 A 333 ALA PRO PHE HIS PHE ALA ARG VAL PRO TYR THR HIS SER SEQRES 21 A 333 GLN THR ASN ASN LYS THR ASP CYS ARG LEU GLN ASN GLN SEQRES 22 A 333 LEU PHE ILE ALA LYS GLU THR THR LEU PHE LEU ALA ALA SEQRES 23 A 333 THR ASN ILE CYS MET ASP PRO LEU ILE TYR ILE PHE LEU SEQRES 24 A 333 CYS LYS LYS PHE THR GLU LYS LEU PRO CYS MET GLN GLY SEQRES 25 A 333 ARG LYS THR THR ALA SER SER GLN GLU ASN HIS SER SER SEQRES 26 A 333 GLN THR ASP ASN ILE THR LEU GLY
HELIX 1 1 ILE A 21 ILE A 51 1 31 HELIX 2 2 THR A 56 ALA A 86 1 31 HELIX 3 3 ALA A 92 ILE A 125 1 34 HELIX 4 4 LYS A 135 LEU A 155 1 21 HELIX 5 5 LEU A 155 LEU A 160 1 6 HELIX 6 6 LYS A 183 ILE A 195 1 13 HELIX 7 7 PHE A 196 ALA A 211 1 16 HELIX 8 8 ASN A 229 SER A 260 1 32 HELIX 9 9 LEU A 274 ALA A 286 1 13 HELIX 10 10 THR A 287 CYS A 300 1 14
SHEET 1 A 2 GLU A 164 ALA A 165 0 SHEET 2 A 2 ALA A 174 SER A 175 -1 O ALA A 174 N ALA A 165
SSBOND 1 CYS A 15 CYS A 268 SSBOND 2 CYS A 95 CYS A 173
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000