10 20 30 40 50 60 70 80 2B68 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 30-SEP-05 2B68
TITLE SOLUTION STRUCTURE OF THE RECOMBINANT CRASSOSTREA GIGAS TITLE 2 DEFENSIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-43; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRASSOSTREA GIGAS; SOURCE 3 ORGANISM_COMMON: PACIFIC OYSTER; SOURCE 4 ORGANISM_TAXID: 29159; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A
KEYWDS ANTIBACTERIAL PEPTIDE, DEFENSIN, CYSTEINE-RICH PEPTIDE, KEYWDS 2 ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR Y.GUEGUEN,H.AMAURY,A.AUMELAS,J.GARNIER,J.FIEVET, AUTHOR 2 J.M.ESCOUBAS,P.BULET,M.GONZALES,C.LELONG,P.FAVREL,E.BACHERE
REVDAT 3 24-FEB-09 2B68 1 VERSN REVDAT 2 24-JAN-06 2B68 1 JRNL REVDAT 1 29-NOV-05 2B68 0
JRNL AUTH Y.GUEGUEN,A.HERPIN,A.AUMELAS,J.GARNIER,J.FIEVET, JRNL AUTH 2 J.M.ESCOUBAS,P.BULET,M.GONZALEZ,C.LELONG,P.FAVREL, JRNL AUTH 3 E.BACHERE JRNL TITL CHARACTERIZATION OF A DEFENSIN FROM THE OYSTER JRNL TITL 2 CRASSOSTREA GIGAS: RECOMBINANT PRODUCTION, JRNL TITL 3 FOLDING, SOLUTION STRUCTURE, ANTIMICROBIAL JRNL TITL 4 ACTIVITIES AND GENE EXPRESSION JRNL REF J.BIOL.CHEM. V. 281 313 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16246846 JRNL DOI 10.1074/JBC.M510850200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 4.1 REMARK 3 AUTHORS : GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2B68 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB034725.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293; 300; 303 REMARK 210 PH : 3.25; 3.25; 3.25; 3.25 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6-0.8MM; 0.6-0.8MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, DQF-COSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 4.1, XWINNMR 3.1, REMARK 210 INSIGHT 97 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: A CRYOPROBE HAS BEEN USED
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 2 34.73 -167.26 REMARK 500 1 ASN A 7 76.03 -176.60 REMARK 500 1 SER A 19 67.89 147.57 REMARK 500 1 ARG A 21 -61.14 -101.54 REMARK 500 1 ASP A 26 100.37 -38.05 REMARK 500 1 TRP A 31 93.78 54.05 REMARK 500 1 LEU A 32 -49.22 -143.91 REMARK 500 1 ASP A 38 113.87 59.46 REMARK 500 1 ASN A 40 77.97 -110.77 REMARK 500 2 ASN A 7 76.01 172.87 REMARK 500 2 SER A 19 65.95 149.34 REMARK 500 2 ALA A 22 146.99 -173.95 REMARK 500 2 ASP A 26 100.33 -37.87 REMARK 500 2 TRP A 31 87.56 45.20 REMARK 500 2 LEU A 32 -53.34 -139.31 REMARK 500 2 ASP A 38 139.11 61.07 REMARK 500 2 ASN A 40 74.51 -111.77 REMARK 500 2 LYS A 42 115.04 61.61 REMARK 500 3 ASN A 7 79.32 167.82 REMARK 500 3 SER A 19 67.96 148.71 REMARK 500 3 ARG A 21 -61.59 -91.81 REMARK 500 3 ALA A 22 146.63 -171.48 REMARK 500 3 ASP A 26 98.41 -37.98 REMARK 500 3 TRP A 31 73.42 41.66 REMARK 500 3 ASP A 38 130.99 61.52 REMARK 500 3 LYS A 42 72.81 56.37 REMARK 500 4 ASN A 7 80.31 159.28 REMARK 500 4 SER A 19 67.65 150.69 REMARK 500 4 ASP A 26 98.27 -38.81 REMARK 500 4 TRP A 31 71.18 41.40 REMARK 500 4 ASP A 38 120.89 60.43 REMARK 500 4 ASN A 40 78.15 -112.80 REMARK 500 5 ASN A 7 80.09 173.12 REMARK 500 5 SER A 19 65.92 148.92 REMARK 500 5 ARG A 21 -60.79 -92.00 REMARK 500 5 ALA A 22 145.45 -173.28 REMARK 500 5 ASP A 26 105.91 -35.12 REMARK 500 5 LEU A 30 21.80 80.58 REMARK 500 5 ASP A 38 128.58 61.13 REMARK 500 5 LYS A 42 140.37 -179.03 REMARK 500 6 ASN A 7 79.00 176.41 REMARK 500 6 SER A 19 66.59 88.44 REMARK 500 6 CYS A 20 -91.56 -124.63 REMARK 500 6 ARG A 21 -68.57 -170.08 REMARK 500 6 ALA A 22 140.32 -175.59 REMARK 500 6 ASP A 26 97.78 -39.35 REMARK 500 6 TRP A 31 73.25 41.36 REMARK 500 6 ASP A 38 124.44 61.98 REMARK 500 7 ASN A 7 81.93 161.89 REMARK 500 7 SER A 19 69.43 146.72 REMARK 500 7 ARG A 21 -61.69 -97.43 REMARK 500 7 ALA A 22 143.36 176.81 REMARK 500 7 ASP A 26 101.12 -36.87 REMARK 500 7 LEU A 30 36.57 71.27 REMARK 500 7 TRP A 31 70.75 42.39 REMARK 500 7 ASP A 38 144.54 60.35 REMARK 500 8 PHE A 2 41.77 -159.87 REMARK 500 8 ASN A 7 78.85 170.96 REMARK 500 8 SER A 19 64.97 150.74 REMARK 500 8 ARG A 21 -62.86 -96.40 REMARK 500 8 ALA A 22 149.13 -171.36 REMARK 500 8 TYR A 24 -168.13 179.34 REMARK 500 8 ASP A 26 97.28 -38.15 REMARK 500 8 TRP A 31 91.87 51.14 REMARK 500 8 LEU A 32 -49.03 -142.90 REMARK 500 8 ASP A 38 115.77 60.15 REMARK 500 9 PHE A 2 35.04 -174.05 REMARK 500 9 ASN A 7 135.06 -174.98 REMARK 500 9 SER A 19 69.74 149.25 REMARK 500 9 ALA A 22 148.43 -176.48 REMARK 500 9 TYR A 24 -167.66 179.59 REMARK 500 9 ASP A 26 96.85 -35.71 REMARK 500 9 LEU A 30 33.40 81.26 REMARK 500 9 ASP A 38 123.12 60.20 REMARK 500 9 LYS A 42 150.95 66.41 REMARK 500 10 ASN A 7 78.93 173.45 REMARK 500 10 SER A 19 69.65 148.30 REMARK 500 10 CYS A 20 -157.79 -141.97 REMARK 500 10 ALA A 22 136.50 -176.32 REMARK 500 10 ASP A 26 104.38 -35.35 REMARK 500 10 LEU A 30 17.98 80.59 REMARK 500 10 TRP A 31 70.71 58.80 REMARK 500 10 ASP A 38 135.52 60.45 REMARK 500 10 ASN A 40 76.63 -110.97 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2B68 A 1 43 UNP Q4GWV4 Q4GWV4_CRAGI 23 65
SEQRES 1 A 43 GLY PHE GLY CYS PRO GLY ASN GLN LEU LYS CYS ASN ASN SEQRES 2 A 43 HIS CYS LYS SER ILE SER CYS ARG ALA GLY TYR CYS ASP SEQRES 3 A 43 ALA ALA THR LEU TRP LEU ARG CYS THR CYS THR ASP CYS SEQRES 4 A 43 ASN GLY LYS LYS
HELIX 1 1 GLN A 8 SER A 19 1 12
SHEET 1 A 2 ALA A 22 TYR A 24 0 SHEET 2 A 2 THR A 35 THR A 37 -1 O THR A 35 N TYR A 24
SSBOND 1 CYS A 4 CYS A 25 1555 1555 2.04 SSBOND 2 CYS A 11 CYS A 34 1555 1555 1.76 SSBOND 3 CYS A 15 CYS A 36 1555 1555 1.94 SSBOND 4 CYS A 20 CYS A 39 1555 1555 1.77
CISPEP 1 CYS A 4 PRO A 5 1 0.02 CISPEP 2 CYS A 4 PRO A 5 2 -0.10 CISPEP 3 CYS A 4 PRO A 5 3 -0.04 CISPEP 4 CYS A 4 PRO A 5 4 0.02 CISPEP 5 CYS A 4 PRO A 5 5 -0.01 CISPEP 6 CYS A 4 PRO A 5 6 0.08 CISPEP 7 CYS A 4 PRO A 5 7 0.07 CISPEP 8 CYS A 4 PRO A 5 8 0.02 CISPEP 9 CYS A 4 PRO A 5 9 0.01 CISPEP 10 CYS A 4 PRO A 5 10 -0.17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000