10 20 30 40 50 60 70 80 2B2W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PEPTIDE BINDING PROTEIN 19-SEP-05 2B2W
TITLE TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONE TITLE 2 H3 TAIL CONTAINING TRIMETHYLLYSINE 4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 268-443; COMPND 5 SYNONYM: CHD-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: RESIDUES 268-373; COMPND 11 SYNONYM: CHD-1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HISTONE H3; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: RESIDUES 1-19; COMPND 17 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CHD1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HOMO SOURCE 24 SAPIENS (HUMANS).
KEYWDS CHD, CHROMODOMAIN, THREE STRANDED ANTIPARALLEL BETA SHEET, KEYWDS 2 ALPHA HELIX LINKER, HISTONE H3, TRIMETHYLLYSINE, PEPTIDE KEYWDS 3 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.F.FLANAGAN IV,L.-Z.MI,M.CHRUSZCZ,M.CYMBOROWSKI,K.L.CLINES, AUTHOR 2 Y.KIM,W.MINOR,F.RASTINEJAD,S.KHORASANIZADEH
REVDAT 3 24-FEB-09 2B2W 1 VERSN REVDAT 2 27-JUN-06 2B2W 1 JRNL REVDAT 1 27-DEC-05 2B2W 0
JRNL AUTH J.F.FLANAGAN,L.Z.MI,M.CHRUSZCZ,M.CYMBOROWSKI, JRNL AUTH 2 K.L.CLINES,Y.KIM,W.MINOR,F.RASTINEJAD, JRNL AUTH 3 S.KHORASANIZADEH JRNL TITL DOUBLE CHROMODOMAINS COOPERATE TO RECOGNIZE THE JRNL TITL 2 METHYLATED HISTONE H3 TAIL. JRNL REF NATURE V. 438 1181 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16372014 JRNL DOI 10.1038/NATURE04290
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 238.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 20757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.22000 REMARK 3 B22 (A**2) : -9.12500 REMARK 3 B33 (A**2) : -2.09500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.53500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.51 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 37.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2B2W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB034608.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2B2T WITHOUT CHAIN D REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG3350, 0.05M HEPES PH 8.0, REMARK 280 10MM BTP, 12.5MM NACL, 5MM TCEP, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 283K, PH 8.00
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.13400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.58350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.13400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.58350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). ACCORDING TO AUTHORS, THE REMARK 300 BIOLOGICAL UNIT OF THE PROTEIN IS UNKNOWN.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 52 REMARK 465 LYS B 187 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 GLU C 10 REMARK 465 LYS C 97 REMARK 465 ASP C 98 REMARK 465 GLN C 99 REMARK 465 GLU C 100 REMARK 465 THR C 101 REMARK 465 LYS C 102 REMARK 465 ARG C 103 REMARK 465 TRP C 104 REMARK 465 LEU C 105 REMARK 465 LYS C 106 REMARK 465 ASN C 107 REMARK 465 ALA C 108 REMARK 465 SER C 109 REMARK 465 PRO C 110 REMARK 465 GLU C 111 REMARK 465 ASP C 112 REMARK 465 VAL C 113 REMARK 465 GLU C 114 REMARK 465 TYR C 115 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 PRO D 16 REMARK 465 ARG D 17 REMARK 465 LYS D 18 REMARK 465 GLN D 19 REMARK 465 TYR D 20
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LEU A 105 CG CD1 CD2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 PHE B 13 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 GLN B 82 CG CD OE1 NE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 SER B 144 OG REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 186 CB CG CD CE NZ REMARK 470 GLU C 11 CG CD OE1 OE2 REMARK 470 PHE C 13 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 53 CG CD CE NZ REMARK 470 GLU C 78 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 144 O TYR B 148 2.14 REMARK 500 O SER B 144 N ALA B 146 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 12 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 GLU B 50 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG B 185 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 -9.41 76.90 REMARK 500 LYS A 51 -17.87 -46.80 REMARK 500 LYS A 53 96.10 -163.19 REMARK 500 GLU A 54 -69.81 -151.28 REMARK 500 LYS A 106 -72.25 -54.92 REMARK 500 SER A 109 152.96 -48.42 REMARK 500 ARG A 185 24.23 -70.19 REMARK 500 LYS A 186 113.06 73.77 REMARK 500 GLU B 12 -127.41 89.89 REMARK 500 ASP B 21 170.93 177.59 REMARK 500 THR B 33 3.20 -67.44 REMARK 500 ASP B 42 18.59 -141.65 REMARK 500 GLU B 54 146.64 -170.68 REMARK 500 GLU B 57 125.67 -179.10 REMARK 500 ARG B 135 142.30 -179.77 REMARK 500 SER B 144 146.23 -39.86 REMARK 500 ALA B 145 82.66 -45.89 REMARK 500 ALA B 146 113.01 68.05 REMARK 500 ALA B 169 -49.92 82.56 REMARK 500 LYS B 174 -32.30 -144.35 REMARK 500 PHE B 183 94.01 -68.24 REMARK 500 SER B 184 50.65 -159.48 REMARK 500 GLU C 12 -142.94 -122.79 REMARK 500 ARG C 18 149.88 -175.79 REMARK 500 LYS C 95 10.94 -61.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 264 DISTANCE = 5.39 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KNA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHROMO DOMAIN OF HP1 COMPLEXED WITH REMARK 900 HISTONE H3 TAIL CONTAINING DIMETHYLLYSINE 9 REMARK 900 RELATED ID: 1KNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHROMO DOMAIN OF HP1 COMPLEXED WITH REMARK 900 HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 9 REMARK 900 RELATED ID: 1Q3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHROMODOMAIN OF HP1 COMPLEXED WITH REMARK 900 HISTONE H3 TAIL CONTAINING MONOMETHYLLYSINE 9 REMARK 900 RELATED ID: 1PDQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF POLYCOMB CHROMODOMAIN COMPLEXED WITH REMARK 900 THE HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 27 REMARK 900 RELATED ID: 2B2T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM CHROMODOMAINS OF HUMAN CHD1 REMARK 900 COMPLEXED WITH HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 4 REMARK 900 AND PHOSPHOTHREONINE 3 REMARK 900 RELATED ID: 2B2U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM CHROMODOMAINS OF HUMAN CHD1 REMARK 900 COMPLEXED WITH HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 4 REMARK 900 AND DIMETHYLARGININE 2 REMARK 900 RELATED ID: 2B2V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF HUMAN CHD1 CHROMODOMAINS 1 REMARK 900 AND 2 BOUND TO HISTONE H3 RESI 1-15 MEK4 REMARK 900 RELATED ID: 2B2Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM CHROMODOMAINS OF HUMAN CHD1
REMARK 999 REMARK 999 SEQUENCE REMARK 999 TYROSINE AT POSITION 20 IS A SYNTHETIC MODIFICATION AND REMARK 999 DOES NOT EXIST IN THE HISTONE H3
DBREF 2B2W A 10 185 UNP O14646 CHD1_HUMAN 268 443 DBREF 2B2W B 10 185 UNP O14646 CHD1_HUMAN 268 443 DBREF 2B2W C 10 115 UNP O14646 CHD1_HUMAN 268 373 DBREF 2B2W D 1 19 UNP P68431 H31_HUMAN 1 19
SEQADV 2B2W MET A 1 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS A 2 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS A 3 UNP O14646 CLONING ARTIFACT SEQADV 2B2W HIS A 4 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS A 5 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS A 6 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS A 7 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS A 8 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS A 9 UNP O14646 EXPRESSION TAG SEQADV 2B2W LYS A 186 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS A 187 UNP O14646 CLONING ARTIFACT SEQADV 2B2W MET B 1 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS B 2 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS B 3 UNP O14646 CLONING ARTIFACT SEQADV 2B2W HIS B 4 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS B 5 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS B 6 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS B 7 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS B 8 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS B 9 UNP O14646 EXPRESSION TAG SEQADV 2B2W LYS B 186 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS B 187 UNP O14646 CLONING ARTIFACT SEQADV 2B2W MET C 1 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS C 2 UNP O14646 CLONING ARTIFACT SEQADV 2B2W LYS C 3 UNP O14646 CLONING ARTIFACT SEQADV 2B2W HIS C 4 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS C 5 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS C 6 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS C 7 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS C 8 UNP O14646 EXPRESSION TAG SEQADV 2B2W HIS C 9 UNP O14646 EXPRESSION TAG SEQADV 2B2W M3L D 4 UNP P68431 LYS 4 MODIFIED RESIDUE SEQADV 2B2W TYR D 20 UNP P68431 SEE REMARK 999
SEQRES 1 A 187 MET LYS LYS HIS HIS HIS HIS HIS HIS GLU GLU GLU PHE SEQRES 2 A 187 GLU THR ILE GLU ARG PHE MET ASP CYS ARG ILE GLY ARG SEQRES 3 A 187 LYS GLY ALA THR GLY ALA THR THR THR ILE TYR ALA VAL SEQRES 4 A 187 GLU ALA ASP GLY ASP PRO ASN ALA GLY PHE GLU LYS ASN SEQRES 5 A 187 LYS GLU PRO GLY GLU ILE GLN TYR LEU ILE LYS TRP LYS SEQRES 6 A 187 GLY TRP SER HIS ILE HIS ASN THR TRP GLU THR GLU GLU SEQRES 7 A 187 THR LEU LYS GLN GLN ASN VAL ARG GLY MET LYS LYS LEU SEQRES 8 A 187 ASP ASN TYR LYS LYS LYS ASP GLN GLU THR LYS ARG TRP SEQRES 9 A 187 LEU LYS ASN ALA SER PRO GLU ASP VAL GLU TYR TYR ASN SEQRES 10 A 187 CYS GLN GLN GLU LEU THR ASP ASP LEU HIS LYS GLN TYR SEQRES 11 A 187 GLN ILE VAL GLY ARG ILE ILE ALA HIS SER ASN GLN LYS SEQRES 12 A 187 SER ALA ALA GLY TYR PRO ASP TYR TYR CYS LYS TRP GLN SEQRES 13 A 187 GLY LEU PRO TYR SER GLU CYS SER TRP GLU ASP GLY ALA SEQRES 14 A 187 LEU ILE SER LYS LYS PHE GLN ALA CYS ILE ASP GLU TYR SEQRES 15 A 187 PHE SER ARG LYS LYS SEQRES 1 B 187 MET LYS LYS HIS HIS HIS HIS HIS HIS GLU GLU GLU PHE SEQRES 2 B 187 GLU THR ILE GLU ARG PHE MET ASP CYS ARG ILE GLY ARG SEQRES 3 B 187 LYS GLY ALA THR GLY ALA THR THR THR ILE TYR ALA VAL SEQRES 4 B 187 GLU ALA ASP GLY ASP PRO ASN ALA GLY PHE GLU LYS ASN SEQRES 5 B 187 LYS GLU PRO GLY GLU ILE GLN TYR LEU ILE LYS TRP LYS SEQRES 6 B 187 GLY TRP SER HIS ILE HIS ASN THR TRP GLU THR GLU GLU SEQRES 7 B 187 THR LEU LYS GLN GLN ASN VAL ARG GLY MET LYS LYS LEU SEQRES 8 B 187 ASP ASN TYR LYS LYS LYS ASP GLN GLU THR LYS ARG TRP SEQRES 9 B 187 LEU LYS ASN ALA SER PRO GLU ASP VAL GLU TYR TYR ASN SEQRES 10 B 187 CYS GLN GLN GLU LEU THR ASP ASP LEU HIS LYS GLN TYR SEQRES 11 B 187 GLN ILE VAL GLY ARG ILE ILE ALA HIS SER ASN GLN LYS SEQRES 12 B 187 SER ALA ALA GLY TYR PRO ASP TYR TYR CYS LYS TRP GLN SEQRES 13 B 187 GLY LEU PRO TYR SER GLU CYS SER TRP GLU ASP GLY ALA SEQRES 14 B 187 LEU ILE SER LYS LYS PHE GLN ALA CYS ILE ASP GLU TYR SEQRES 15 B 187 PHE SER ARG LYS LYS SEQRES 1 C 115 MET LYS LYS HIS HIS HIS HIS HIS HIS GLU GLU GLU PHE SEQRES 2 C 115 GLU THR ILE GLU ARG PHE MET ASP CYS ARG ILE GLY ARG SEQRES 3 C 115 LYS GLY ALA THR GLY ALA THR THR THR ILE TYR ALA VAL SEQRES 4 C 115 GLU ALA ASP GLY ASP PRO ASN ALA GLY PHE GLU LYS ASN SEQRES 5 C 115 LYS GLU PRO GLY GLU ILE GLN TYR LEU ILE LYS TRP LYS SEQRES 6 C 115 GLY TRP SER HIS ILE HIS ASN THR TRP GLU THR GLU GLU SEQRES 7 C 115 THR LEU LYS GLN GLN ASN VAL ARG GLY MET LYS LYS LEU SEQRES 8 C 115 ASP ASN TYR LYS LYS LYS ASP GLN GLU THR LYS ARG TRP SEQRES 9 C 115 LEU LYS ASN ALA SER PRO GLU ASP VAL GLU TYR SEQRES 1 D 20 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 20 LYS ALA PRO ARG LYS GLN TYR
MODRES 2B2W M3L D 4 LYS N-TRIMETHYLLYSINE
HET M3L D 4 12
HETNAM M3L N-TRIMETHYLLYSINE
FORMUL 4 M3L C9 H21 N2 O2 1+ FORMUL 5 HOH *301(H2 O)
HELIX 1 1 GLY A 31 THR A 34 5 4 HELIX 2 2 THR A 35 GLY A 43 1 9 HELIX 3 3 SER A 68 ASN A 72 5 5 HELIX 4 4 THR A 76 GLN A 83 1 8 HELIX 5 5 MET A 88 LEU A 105 1 18 HELIX 6 6 SER A 109 TYR A 130 1 22 HELIX 7 7 PRO A 159 CYS A 163 5 5 HELIX 8 8 ASP A 167 ARG A 185 1 19 HELIX 9 9 GLY B 31 THR B 34 5 4 HELIX 10 10 THR B 35 GLY B 43 1 9 HELIX 11 11 SER B 68 ASN B 72 5 5 HELIX 12 12 THR B 76 GLN B 82 1 7 HELIX 13 13 GLY B 87 ALA B 108 1 22 HELIX 14 14 SER B 109 TYR B 130 1 22 HELIX 15 15 PRO B 159 CYS B 163 5 5 HELIX 16 16 ILE B 171 PHE B 183 1 13 HELIX 17 17 GLY C 31 THR C 34 5 4 HELIX 18 18 THR C 35 GLY C 43 1 9 HELIX 19 19 SER C 68 ASN C 72 5 5 HELIX 20 20 THR C 76 GLN C 83 1 8 HELIX 21 21 GLY C 87 LYS C 95 1 9
SHEET 1 A 3 ILE A 16 GLY A 25 0 SHEET 2 A 3 GLU A 57 TRP A 64 -1 O GLN A 59 N ARG A 23 SHEET 3 A 3 THR A 73 GLU A 75 -1 O GLU A 75 N TYR A 60 SHEET 1 B 3 VAL A 133 HIS A 139 0 SHEET 2 B 3 TYR A 151 TRP A 155 -1 O TYR A 152 N ILE A 137 SHEET 3 B 3 SER A 164 GLU A 166 -1 O GLU A 166 N TYR A 151 SHEET 1 C 3 ILE B 16 ILE B 24 0 SHEET 2 C 3 ILE B 58 TRP B 64 -1 O LEU B 61 N ASP B 21 SHEET 3 C 3 THR B 73 GLU B 75 -1 O GLU B 75 N TYR B 60 SHEET 1 D 3 VAL B 133 HIS B 139 0 SHEET 2 D 3 TYR B 151 TRP B 155 -1 O LYS B 154 N GLY B 134 SHEET 3 D 3 SER B 164 GLU B 166 -1 O SER B 164 N CYS B 153 SHEET 1 E 3 ILE C 16 ARG C 26 0 SHEET 2 E 3 GLY C 56 TRP C 64 -1 O LEU C 61 N MET C 20 SHEET 3 E 3 THR C 73 GLU C 75 -1 O THR C 73 N ILE C 62
LINK C THR D 3 N M3L D 4 1555 1555 1.33 LINK C M3L D 4 N GLN D 5 1555 1555 1.33
CISPEP 1 GLU A 54 PRO A 55 0 2.94
CRYST1 112.268 55.167 100.507 90.00 112.44 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008907 0.000000 0.003679 0.00000
SCALE2 0.000000 0.018127 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010765 0.00000