10 20 30 40 50 60 70 80 2AQA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 17-AUG-05 2AQA
TITLE NMR STRUCTURAL ANALYSIS OF NOP10P FROM SACCHAROMYCES TITLE 2 CEREVISIAE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEOLAR PROTEIN FAMILY A MEMBER 3, SNORNP COMPND 5 PROTEIN NOP10; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NOP10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYS S; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9
KEYWDS NOP10P, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.HAMMA,S.L.REICHOW,G.VARANI,A.R.FERRE-D'AMARE
REVDAT 3 24-FEB-09 2AQA 1 VERSN REVDAT 2 03-JAN-06 2AQA 1 JRNL REVDAT 1 15-NOV-05 2AQA 0
JRNL AUTH T.HAMMA,S.L.REICHOW,G.VARANI,A.R.FERRE-D'AMARE JRNL TITL THE CBF5-NOP10 COMPLEX IS A MOLECULAR BRACKET THAT JRNL TITL 2 ORGANIZES BOX H/ACA RNPS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 1101 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 16286935 JRNL DOI 10.1038/NSMB1036
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA V. 2.0 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 467 RESTRAINTS, 422 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 45 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 2AQA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB034186.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50MM; 100MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM YNOP10P UNLABELLED; REMARK 210 SODIUM ACETATE, KCL; 1MM REMARK 210 YNOP10P UNLABELLED; SODIUM REMARK 210 ACETATE, KCL; 1MM YNOP10P 15N- REMARK 210 LABELLED; SODIUM ACETATE, KCL; REMARK 210 1MM YNOP10P 15N,13C-LABELLED; REMARK 210 SODIUM ACETATE, KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE V. 2.3, SPARKY V. REMARK 210 3.110, TALOS V. 2003.027.13.05 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DIHEDRAL RESTRAINTS DERIVED FROM TALOS PREDICITONS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 15 95.93 -61.33 REMARK 500 1 THR A 21 -73.68 -55.77 REMARK 500 1 SER A 36 68.53 -168.52 REMARK 500 1 LEU A 48 175.04 -54.91 REMARK 500 2 TYR A 15 84.52 -69.85 REMARK 500 2 THR A 16 32.53 -146.41 REMARK 500 2 HIS A 31 73.29 58.00 REMARK 500 2 SER A 36 70.70 -177.67 REMARK 500 2 LEU A 48 -74.71 -56.04 REMARK 500 3 LYS A 19 174.02 -59.59 REMARK 500 3 SER A 29 34.22 -96.38 REMARK 500 3 HIS A 31 72.50 58.75 REMARK 500 3 PRO A 32 -173.45 -69.77 REMARK 500 3 VAL A 55 71.70 -115.67 REMARK 500 4 TYR A 15 109.24 -53.04 REMARK 500 4 THR A 16 28.54 -152.42 REMARK 500 4 HIS A 31 71.45 -171.68 REMARK 500 4 ARG A 34 131.24 -176.55 REMARK 500 4 SER A 36 72.42 -173.22 REMARK 500 4 PHE A 52 104.86 -56.49 REMARK 500 5 TYR A 15 105.64 -58.37 REMARK 500 5 THR A 16 25.63 -149.96 REMARK 500 5 HIS A 31 153.78 64.51 REMARK 500 5 PRO A 32 -175.50 -69.79 REMARK 500 5 ARG A 43 -72.83 -52.09 REMARK 500 6 TYR A 15 100.51 -58.36 REMARK 500 6 SER A 23 77.29 -115.48 REMARK 500 6 HIS A 31 68.47 -163.40 REMARK 500 6 LYS A 49 -74.64 -83.75 REMARK 500 7 TYR A 15 99.55 -57.53 REMARK 500 7 PRO A 32 -172.01 -69.83 REMARK 500 7 SER A 36 73.05 -165.87 REMARK 500 7 ASP A 38 102.00 -59.25 REMARK 500 7 LYS A 40 -77.73 -95.30 REMARK 500 7 VAL A 55 69.44 61.43 REMARK 500 8 TYR A 15 107.13 -51.61 REMARK 500 8 LYS A 18 105.02 -53.62 REMARK 500 8 ARG A 34 147.00 -175.49 REMARK 500 8 VAL A 55 71.22 62.20 REMARK 500 9 TYR A 15 103.54 -51.43 REMARK 500 9 PRO A 32 99.98 -69.79 REMARK 500 10 MET A 4 33.49 -95.72 REMARK 500 10 LYS A 18 103.67 -58.57 REMARK 500 10 LYS A 50 109.13 -51.66 REMARK 500 11 TYR A 15 104.48 -51.79 REMARK 500 11 LEU A 48 117.07 -166.82 REMARK 500 11 LYS A 50 -179.47 -57.45 REMARK 500 11 VAL A 55 72.73 58.67 REMARK 500 12 TYR A 15 99.16 -57.46 REMARK 500 12 THR A 16 24.49 -144.43 REMARK 500 12 SER A 36 69.00 -118.68 REMARK 500 13 TYR A 15 -175.39 -58.13 REMARK 500 13 LYS A 18 106.24 -54.25 REMARK 500 13 HIS A 31 68.78 -167.32 REMARK 500 13 PRO A 32 87.54 -69.68 REMARK 500 13 ARG A 34 111.54 -176.72 REMARK 500 13 SER A 36 71.70 -161.09 REMARK 500 13 VAL A 55 70.61 53.93 REMARK 500 13 PRO A 56 -172.37 -69.67 REMARK 500 14 TYR A 15 103.17 -51.85 REMARK 500 14 GLU A 25 107.49 -58.52 REMARK 500 14 SER A 36 70.08 -171.03 REMARK 500 14 SER A 42 174.04 -53.90 REMARK 500 14 ARG A 51 -73.69 -86.60 REMARK 500 14 VAL A 55 68.50 63.38 REMARK 500 14 PRO A 56 -173.30 -69.82 REMARK 500 15 TYR A 15 104.19 -53.73 REMARK 500 15 THR A 16 30.56 -148.67 REMARK 500 15 PRO A 32 93.85 -69.75 REMARK 500 15 ARG A 34 131.86 -175.90 REMARK 500 15 SER A 36 73.31 52.93 REMARK 500 15 PRO A 56 96.36 -69.79 REMARK 500 17 HIS A 31 71.85 -169.80 REMARK 500 17 SER A 36 108.90 -50.94 REMARK 500 17 SER A 42 36.68 -96.04 REMARK 500 17 LEU A 48 120.15 -176.72 REMARK 500 18 TYR A 15 98.21 -61.99 REMARK 500 18 LYS A 50 -65.15 -90.22 REMARK 500 19 TYR A 15 101.84 -53.98 REMARK 500 19 HIS A 31 71.74 -166.62 REMARK 500 19 PRO A 32 90.02 -69.78 REMARK 500 19 SER A 42 104.98 -59.57 REMARK 500 19 LEU A 54 -74.75 -78.50 REMARK 500 20 TYR A 15 105.51 -53.05 REMARK 500 20 HIS A 31 68.41 60.75 REMARK 500 20 SER A 36 160.33 63.01 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2AQA A 2 58 UNP Q6Q547 NOP10_YEAST 2 58
SEQADV 2AQA HIS A 59 UNP Q6Q547 EXPRESSION TAG SEQADV 2AQA HIS A 60 UNP Q6Q547 EXPRESSION TAG SEQADV 2AQA HIS A 61 UNP Q6Q547 EXPRESSION TAG SEQADV 2AQA HIS A 62 UNP Q6Q547 EXPRESSION TAG SEQADV 2AQA HIS A 63 UNP Q6Q547 EXPRESSION TAG SEQADV 2AQA HIS A 64 UNP Q6Q547 EXPRESSION TAG
SEQRES 1 A 63 HIS LEU MET TYR THR LEU GLY PRO ASP GLY LYS ARG ILE SEQRES 2 A 63 TYR THR LEU LYS LYS VAL THR GLU SER GLY GLU ILE THR SEQRES 3 A 63 LYS SER ALA HIS PRO ALA ARG PHE SER PRO ASP ASP LYS SEQRES 4 A 63 TYR SER ARG GLN ARG VAL THR LEU LYS LYS ARG PHE GLY SEQRES 5 A 63 LEU VAL PRO GLY GLN HIS HIS HIS HIS HIS HIS
HELIX 1 1 SER A 42 THR A 47 1 6
SHEET 1 A 2 THR A 6 LEU A 7 0 SHEET 2 A 2 ARG A 13 ILE A 14 -1 O ILE A 14 N THR A 6
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000