2AK1 - Header Asymmetric Unit

HEADER IMMUNE SYSTEM 02-AUG-05 2AK1

TITLE CRYSTAL STRUCTURE OF COCAINE CATALYTIC ANTIBODY 7A1 FAB' IN TITLE 2 COMPLEX WITH BENZOIC ACID

COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 7A1 FAB'; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: IMMUNOGLOBULIN IGG1 KAPPA LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 7A1 FAB'; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: IMMUNOGLOBULIN IGG1 HEAVY CHAIN

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090

KEYWDS CATALYTIC ANTIBODY, FAB, BENZOIC ACID, HYDROLYTIC, IMMUNE KEYWDS 2 SYSTEM

EXPDTA X-RAY DIFFRACTION

AUTHOR X.ZHU,I.A.WILSON

REVDAT 2 24-FEB-09 2AK1 1 VERSN REVDAT 1 14-FEB-06 2AK1 0

JRNL AUTH X.ZHU,T.J.DICKERSON,C.J.ROGERS,G.F.KAUFMANN, JRNL AUTH 2 J.M.MEE,K.M.MCKENZIE,K.D.JANDA,I.A.WILSON JRNL TITL COMPLETE REACTION CYCLE OF A COCAINE CATALYTIC JRNL TITL 2 ANTIBODY AT ATOMIC RESOLUTION. JRNL REF STRUCTURE V. 14 205 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16472740 JRNL DOI 10.1016/J.STR.2005.10.014

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 46346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2334 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3373 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.99900 REMARK 3 B22 (A**2) : 9.21700 REMARK 3 B33 (A**2) : 0.78200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 43.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2AK1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033986.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07810 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2AJS REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ZINC ACETATE, SODIUM REMARK 280 ACETATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.72700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.72700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.29750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.55300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.29750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.55300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.72700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.29750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.55300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.72700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.29750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.55300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -241.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.10600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 153.45400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 41.29750 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 44.55300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 41.29750 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 44.55300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 153.45400

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS L 27E -6.25 -57.28 REMARK 500 MET L 51 -36.12 63.63 REMARK 500 SER L 67 -113.45 -99.24 REMARK 500 ARG L 77 70.57 39.19 REMARK 500 SER H 15 -5.38 78.16 REMARK 500 ASN H 32 59.44 -91.23 REMARK 500 ASN H 43 3.28 80.84 REMARK 500 SER H 54 -27.80 66.94 REMARK 500 LYS H 64 -134.35 47.65 REMARK 500 THR H 128 -143.88 -125.79 REMARK 500 ALA H 130 -159.44 -76.55 REMARK 500 SER H 136 -124.19 -124.63 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 72 OD1 REMARK 620 2 SER H 74 OG 59.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 504 O REMARK 620 2 HIS H 172 NE2 82.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH L 623 O REMARK 620 2 HIS L 189 NE2 111.1 REMARK 620 3 GLU L 185 OE2 149.2 82.0 REMARK 620 4 GLU L 185 OE1 96.0 119.1 54.2 REMARK 620 5 GLN H 204 OE1 91.6 79.9 118.6 154.7 REMARK 620 6 GLN H 204 NE2 104.5 121.7 90.3 100.7 54.0 REMARK 620 N 1 2 3 4 5

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 502 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 503 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 504 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ H 401

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AJS RELATED DB: PDB REMARK 900 SAME NATIVE PROTEIN IN COMPLEX WITH HEPTAETHYLENE GLYCOL REMARK 900 RELATED ID: 2AJU RELATED DB: PDB REMARK 900 SAME NATIVE PROTEIN IN APO FORM REMARK 900 RELATED ID: 2AJV RELATED DB: PDB REMARK 900 SAME NATIVE PROTEIN IN COMPLEX WITH COCAINE REMARK 900 RELATED ID: 2AJX RELATED DB: PDB REMARK 900 SAME NATIVE PROTEIN IN COMPLEX WITH TRANSITION STATE ANALOG REMARK 900 RELATED ID: 2AJY RELATED DB: PDB REMARK 900 SAME NATIVE PROTEIN IN COMPLEX WITH ECGONINE METHYL ESTER REMARK 900 AND BENZOIC ACID REMARK 900 RELATED ID: 2AJZ RELATED DB: PDB REMARK 900 SAME NATIVE PROTEIN IN COMPLEX WITH ECGONINE METHYL ESTER

REMARK 999 REMARK 999 SEQUENCE THE SEQUENCE OF THESE PROTEINS ARE NOT AVAILABLE AT ANY REMARK 999 SEQUENCE DATABASE AT THE TIME OF PROCESSING.

DBREF 2AK1 L 1 211 PDB 2AK1 2AK1 1 211 DBREF 2AK1 H 1 228 PDB 2AK1 2AK1 1 228

SEQRES 1 L 216 ASP ILE VAL ILE THR GLN ASP GLU LEU SER ASN PRO VAL SEQRES 2 L 216 THR SER GLY GLU SER VAL SER ILE SER CYS ARG SER SER SEQRES 3 L 216 ARG SER LEU LEU TYR LYS ASP GLY ARG THR TYR LEU ASN SEQRES 4 L 216 TRP PHE LEU GLN ARG PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 216 ILE TYR LEU MET SER THR ARG ALA SER GLY VAL SER ASP SEQRES 6 L 216 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 216 GLU ILE SER ARG VAL LYS ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 216 TYR CYS GLN GLN PHE VAL GLU TYR PRO PHE THR PHE GLY SEQRES 9 L 216 SER GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 216 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 216 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 216 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 216 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 216 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 216 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 216 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 216 PRO ILE VAL LYS SER PHE ASN ARG SEQRES 1 H 219 GLU VAL LYS LEU SER GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 219 PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY SEQRES 3 H 219 TYR SER ILE THR THR ASN TYR ALA TRP THR TRP ILE ARG SEQRES 4 H 219 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE SEQRES 5 H 219 ARG SER SER VAL ILE THR ARG TYR ASN PRO SER LEU LYS SEQRES 6 H 219 SER ARG ILE SER ILE THR GLN ASP THR SER LYS ASN GLN SEQRES 7 H 219 PHE PHE LEU GLN LEU ASN SER VAL THR THR GLU ASP THR SEQRES 8 H 219 ALA THR TYR TYR CYS ALA ARG TYR ASP TYR TYR GLY ASN SEQRES 9 H 219 THR GLY ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 219 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 219 ALA PRO GLY THR ALA ALA LEU LYS SER SER MET VAL THR SEQRES 12 H 219 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 219 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 219 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 219 LEU THR SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 219 SER GLN THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 219 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG

HET ZN L 501 1 HET ZN H 502 1 HET ZN L 503 1 HET ZN H 504 1 HET BEZ H 401 9

HETNAM ZN ZINC ION HETNAM BEZ BENZOIC ACID

FORMUL 3 ZN 4(ZN 2+) FORMUL 7 BEZ C7 H6 O2 FORMUL 8 HOH *332(H2 O)

HELIX 1 1 LYS L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 THR L 126 1 6 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 PRO H 61 LYS H 64 5 4 HELIX 5 5 THR H 73 LYS H 75 5 3 HELIX 6 6 THR H 83 THR H 87 5 5 HELIX 7 7 SER H 163 SER H 165 5 3 HELIX 8 8 PRO H 213 SER H 216 5 4

SHEET 1 A 4 ILE L 4 THR L 5 0 SHEET 2 A 4 VAL L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 A 4 PHE L 62 GLY L 66 -1 N SER L 63 O GLU L 74 SHEET 1 B 2 VAL L 13 THR L 14 0 SHEET 2 B 2 ILE L 106 LYS L 107 1 O LYS L 107 N VAL L 13 SHEET 1 C 5 THR L 53 ARG L 54 0 SHEET 2 C 5 GLN L 45 TYR L 49 -1 N TYR L 49 O THR L 53 SHEET 3 C 5 LEU L 33 GLN L 38 -1 N TRP L 35 O LEU L 47 SHEET 4 C 5 GLY L 84 GLN L 90 -1 O TYR L 87 N PHE L 36 SHEET 5 C 5 THR L 102 LEU L 104 -1 O THR L 102 N TYR L 86 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 D 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 E 4 SER L 153 ARG L 155 0 SHEET 2 E 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 E 4 SER L 191 HIS L 198 -1 O GLU L 195 N LYS L 147 SHEET 4 E 4 ILE L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 F 4 LYS H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 THR H 25 -1 O THR H 21 N SER H 7 SHEET 3 F 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 F 4 ILE H 67 ASP H 72 -1 N THR H 70 O PHE H 79 SHEET 1 G 6 LEU H 11 VAL H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 6 ALA H 88 TYR H 95 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 ALA H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 G 6 LEU H 45 ARG H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 ILE H 56 TYR H 59 -1 O ILE H 56 N ARG H 52 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 MET H 137 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 H 4 LEU H 184 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 H 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 190 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 MET H 137 TYR H 147 -1 O LEU H 143 N TYR H 122 SHEET 3 I 4 LEU H 184 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 I 4 VAL H 177 GLN H 179 -1 N VAL H 177 O THR H 186 SHEET 1 J 3 THR H 153 TRP H 157 0 SHEET 2 J 3 THR H 207 HIS H 212 -1 O ASN H 209 N THR H 156 SHEET 3 J 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210

SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.03

LINK ZN ZN H 504 OD1 ASP H 72 1555 1555 2.76 LINK ZN ZN H 504 OG SER H 74 1555 1555 2.32 LINK ZN ZN L 501 O HOH L 504 1555 1555 2.66 LINK ZN ZN L 501 NE2 HIS H 172 1555 1555 2.46 LINK ZN ZN L 503 O HOH L 623 1555 1555 2.22 LINK ZN ZN L 503 NE2 HIS L 189 1555 1555 2.12 LINK ZN ZN L 503 OE2 GLU L 185 1555 1555 2.53 LINK ZN ZN L 503 OE1 GLU L 185 1555 1555 2.31 LINK ZN ZN L 503 OE1 GLN H 204 1555 8556 2.69 LINK ZN ZN L 503 NE2 GLN H 204 1555 8556 2.14

CISPEP 1 TYR L 94 PRO L 95 0 -0.26 CISPEP 2 TYR L 140 PRO L 141 0 -0.05 CISPEP 3 PHE H 148 PRO H 149 0 -0.31 CISPEP 4 GLU H 150 PRO H 151 0 -0.08 CISPEP 5 TRP H 200 PRO H 202 0 -0.26

SITE 1 AC1 5 HIS H 172 ASN L 138 ASP L 167 HOH L 504 SITE 2 AC1 5 HOH L 637 SITE 1 AC2 1 GLU H 1 SITE 1 AC3 4 GLN H 204 GLU L 185 HIS L 189 HOH L 623 SITE 1 AC4 2 ASP H 72 SER H 74 SITE 1 AC5 4 ASN H 32 ALA H 34 TYR H 97 LYS L 107

CRYST1 82.595 89.106 153.454 90.00 90.00 90.00 C 2 2 21 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.012110 0.000000 0.000000 0.00000

SCALE2 0.000000 0.011220 0.000000 0.00000

SCALE3 0.000000 0.000000 0.006520 0.00000