10 20 30 40 50 60 70 80 2AJJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 02-AUG-05 2AJJ
TITLE NMR STRUCTURE OF THE IN-PLANE MEMBRANE ANCHOR DOMAIN [1-28] TITLE 2 OF THE MONOTOPIC NON STRUCTURAL PROTEIN 5A (NS5A) OF TITLE 3 BOVINE VIRAL DIARRHEA VIRUS (BVDV)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSTRUCTURAL PROTEIN 5A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BVDV NS5A; COMPND 5 SYNONYM: NS5A; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE IS NATURALLY FOUND IN BOVINE VIRAL DIARRHEA VIRUS SOURCE 5 1, STRAIN CP7.
KEYWDS IN-PLANE MEMBRANE ANCHOR DOMAIN, AMPHIPATHIC ALPHA-HELIX, KEYWDS 2 MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 31
AUTHOR N.SAPAY,R.MONTSERRET,C.CHIPOT,V.BRASS,D.MORADPOUR,G.DELEAGE, AUTHOR 2 F.PENIN
REVDAT 3 24-FEB-09 2AJJ 1 VERSN REVDAT 2 31-OCT-06 2AJJ 1 JRNL REVDAT 1 23-AUG-05 2AJJ 0
JRNL AUTH N.SAPAY,R.MONTSERRET,C.CHIPOT,V.BRASS,D.MORADPOUR, JRNL AUTH 2 G.DELEAGE,F.PENIN JRNL TITL NMR STRUCTURE AND MOLECULAR DYNAMICS OF THE JRNL TITL 2 IN-PLANE MEMBRANE ANCHOR OF NONSTRUCTURAL PROTEIN JRNL TITL 3 5A FROM BOVINE VIRAL DIARRHEA VIRUS. JRNL REF BIOCHEMISTRY V. 45 2221 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16475810 JRNL DOI 10.1021/BI0517685
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.0.6 REMARK 3 AUTHORS : BRUNGER A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2AJJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033968.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 313 REMARK 210 PH : 4.5; 4.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM BVDV NS5A[1-28], 50% 2, REMARK 210 2,2-TRIFLUOROETHANOL-D2 , 50% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY, 1H 13C REMARK 210 HSQC, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH 2.0.6, VNMR 6.1, REMARK 210 SPARKY 3.110, PROCHECK-NMR REMARK 210 3.5.4 REMARK 210 METHOD USED : DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING AND ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 -147.35 -153.34 REMARK 500 1 TYR A 4 -34.99 -159.70 REMARK 500 2 ASN A 3 -177.82 61.50 REMARK 500 2 TYR A 4 -56.60 -163.33 REMARK 500 2 TRP A 27 -53.44 -165.88 REMARK 500 3 ASN A 3 -70.49 -116.75 REMARK 500 3 TYR A 4 -56.26 -171.35 REMARK 500 3 TRP A 27 -156.72 50.32 REMARK 500 4 ASN A 3 -164.83 58.80 REMARK 500 4 TYR A 4 -35.95 -166.04 REMARK 500 4 TRP A 27 -151.16 55.74 REMARK 500 5 ASN A 3 -168.49 57.37 REMARK 500 5 TYR A 4 -36.27 -165.01 REMARK 500 7 TRP A 27 -51.29 -163.54 REMARK 500 8 TRP A 27 -39.51 -169.49 REMARK 500 9 TRP A 27 -59.48 -144.15 REMARK 500 11 ASN A 3 -123.77 -102.85 REMARK 500 12 ASN A 3 -75.43 -127.67 REMARK 500 13 TRP A 27 73.55 56.18 REMARK 500 14 TYR A 4 -52.15 -154.07 REMARK 500 15 TYR A 4 -51.36 -147.04 REMARK 500 15 TRP A 27 -165.65 56.81 REMARK 500 16 ASN A 3 -155.53 55.35 REMARK 500 19 TYR A 4 46.65 34.98 REMARK 500 22 TYR A 4 -65.92 -166.43 REMARK 500 23 ASN A 3 -56.77 -157.10 REMARK 500 24 TYR A 4 -54.41 -163.62 REMARK 500 25 ASN A 3 179.34 67.70 REMARK 500 26 ASN A 3 -168.29 57.61 REMARK 500 27 ASN A 3 -170.99 64.81 REMARK 500 29 ASN A 3 -43.03 -155.94 REMARK 500 29 TYR A 4 -66.01 -161.33 REMARK 500 30 ASN A 3 -171.06 59.53 REMARK 500 30 TYR A 4 -55.55 -163.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.30 SIDE_CHAIN REMARK 500 2 ARG A 18 0.30 SIDE_CHAIN REMARK 500 3 ARG A 18 0.30 SIDE_CHAIN REMARK 500 4 ARG A 18 0.31 SIDE_CHAIN REMARK 500 5 ARG A 18 0.31 SIDE_CHAIN REMARK 500 6 ARG A 18 0.31 SIDE_CHAIN REMARK 500 7 ARG A 18 0.29 SIDE_CHAIN REMARK 500 8 ARG A 18 0.32 SIDE_CHAIN REMARK 500 9 ARG A 18 0.31 SIDE_CHAIN REMARK 500 10 ARG A 18 0.28 SIDE_CHAIN REMARK 500 11 ARG A 18 0.32 SIDE_CHAIN REMARK 500 12 ARG A 18 0.30 SIDE_CHAIN REMARK 500 13 ARG A 18 0.31 SIDE_CHAIN REMARK 500 14 ARG A 18 0.32 SIDE_CHAIN REMARK 500 15 ARG A 18 0.31 SIDE_CHAIN REMARK 500 16 ARG A 18 0.32 SIDE_CHAIN REMARK 500 17 ARG A 18 0.32 SIDE_CHAIN REMARK 500 18 ARG A 18 0.32 SIDE_CHAIN REMARK 500 19 ARG A 18 0.31 SIDE_CHAIN REMARK 500 20 ARG A 18 0.31 SIDE_CHAIN REMARK 500 21 ARG A 18 0.31 SIDE_CHAIN REMARK 500 22 ARG A 18 0.27 SIDE_CHAIN REMARK 500 23 ARG A 18 0.22 SIDE_CHAIN REMARK 500 24 ARG A 18 0.32 SIDE_CHAIN REMARK 500 25 ARG A 18 0.31 SIDE_CHAIN REMARK 500 26 ARG A 18 0.28 SIDE_CHAIN REMARK 500 27 ARG A 18 0.31 SIDE_CHAIN REMARK 500 28 ARG A 18 0.32 SIDE_CHAIN REMARK 500 29 ARG A 18 0.31 SIDE_CHAIN REMARK 500 30 ARG A 18 0.32 SIDE_CHAIN REMARK 500 31 ARG A 18 0.30 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6757 RELATED DB: BMRB REMARK 900 NMR DATA RELATED TO BVDV NS5A[1-28]STRUCTURE REMARK 900 RELATED ID: 2AJN RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE FROM AN ENSEMBLE OF 31 REMARK 900 STRUCTURES (SAMPLE IN 50% TFE) REMARK 900 RELATED ID: 2AJM RELATED DB: PDB REMARK 900 ENSEMBLE OF 9 STRUCTURES OF BVDV NS5A[1-28], SAMPLE IN SDS REMARK 900 100 MM REMARK 900 RELATED ID: 2AJO RELATED DB: PDB REMARK 900 REPRESENTATIVE STRUCTURE FROM AN ENSEMBLE OF 9 STRUCTURES REMARK 900 (SAMPLE IN 100 MM SDS)
DBREF 2AJJ A 1 28 UNP Q96662 POLG_BVDVC 2693 2720
SEQRES 1 A 28 SER GLY ASN TYR VAL LEU ASP LEU ILE TYR SER LEU HIS SEQRES 2 A 28 LYS GLN ILE ASN ARG GLY LEU LYS LYS ILE VAL LEU GLY SEQRES 3 A 28 TRP ALA
HELIX 1 1 TYR A 4 TRP A 27 1 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000