10 20 30 40 50 60 70 80 2AIN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION/TRANSFERASE 30-JUL-05 2AIN
TITLE SOLUTION STRUCTURE OF THE AF-6 PDZ DOMAIN COMPLEXED WITH THE TITLE 2 C-TERMINAL PEPTIDE FROM THE BCR PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFADIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AF-6 PDZ DOMAIN; COMPND 5 SYNONYM: AF-6 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 6-MER PEPTIDE FROM BREAKPOINT CLUSTER REGION COMPND 9 PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: C-TERMINAL PEPTIDE; COMPND 12 EC: 2.7.1.-; COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B (+); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.
KEYWDS AF-6 PDZ DOMAIN/BCR COMPLEX, CELL ADHESION/TRANSFERASE KEYWDS 2 COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Q.CHEN,J.WU,Y.SHI
REVDAT 3 19-JAN-10 2AIN 1 JRNL REVDAT 2 24-FEB-09 2AIN 1 VERSN REVDAT 1 18-JUL-06 2AIN 0
JRNL AUTH Q.CHEN,X.NIU,Y.XU,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE JRNL TITL 2 AF-6 PDZ DOMAIN/BCR PEPTIDE COMPLEX. JRNL REF PROTEIN SCI. V. 16 1053 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17473018 JRNL DOI 10.1110/PS.062440607
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE COMPLEX STRUCTURE IS SOLVED REMARK 3 USING A TOTAL OF 1606 EXPERIMENTAL RESTRAINTS THAT INCLUDES REMARK 3 1471 INTRAMOLECULAR NOES, 61 INTERMOLECULAR NOES AND 74 REMARK 3 DIHEDRAL ANGLES RESTRAINTS
REMARK 4 REMARK 4 2AIN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033938.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 2.0MM 15N, 13C-LABELED AF-6 REMARK 210 PDZ DOMAIN, 50MM PHOSPHATE REMARK 210 BUFFER (PH 5.9), 1MM EDTA, 10% REMARK 210 (V/V) D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_ REMARK 210 15N-SEPARATED_NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, SPARKY 3, CNS REMARK 210 1.1, CSI 1.0, MOLMOL 2K.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: INTERMOLECULAR INTERACTIONS WERE IDENTIFIED IN A 13C/ REMARK 210 15N-FILTERED (F1), 13C-EDITED(F3) 3D NOESY SPECTRUM
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 41.43 -159.49 REMARK 500 1 GLU A 3 98.97 62.18 REMARK 500 1 PRO A 4 -173.77 -67.31 REMARK 500 1 ASN A 15 37.42 -168.41 REMARK 500 1 ARG A 50 -61.87 -133.16 REMARK 500 1 LEU A 58 -59.31 -126.52 REMARK 500 1 ARG A 79 43.93 -82.96 REMARK 500 2 LYS A 2 -174.31 62.55 REMARK 500 2 PRO A 4 -164.42 -62.66 REMARK 500 2 LYS A 13 96.75 -68.26 REMARK 500 2 ALA A 44 -60.47 -95.25 REMARK 500 2 ARG A 50 30.79 -141.02 REMARK 500 2 ARG A 79 44.45 -92.42 REMARK 500 2 SER A 81 -164.66 -103.07 REMARK 500 3 PRO A 4 -178.53 -58.36 REMARK 500 3 GLN A 14 -60.75 -92.11 REMARK 500 3 ASN A 15 36.38 -157.86 REMARK 500 3 LEU A 65 42.22 -109.11 REMARK 500 3 ARG A 79 42.67 -91.31 REMARK 500 3 SER B 101 100.84 179.53 REMARK 500 4 LYS A 2 82.50 63.54 REMARK 500 4 PRO A 4 -171.47 -62.50 REMARK 500 4 ASN A 15 44.82 -163.68 REMARK 500 4 LEU A 58 -58.83 -122.41 REMARK 500 4 VAL A 66 83.62 -68.88 REMARK 500 4 THR B 102 -151.89 -98.96 REMARK 500 4 GLU B 103 44.89 -174.11 REMARK 500 5 ASN A 15 42.86 -161.58 REMARK 500 5 LEU A 58 -55.95 -127.00 REMARK 500 5 ARG A 79 32.82 -96.47 REMARK 500 5 PHE B 100 31.58 -170.54 REMARK 500 5 SER B 101 43.45 168.98 REMARK 500 6 ASN A 15 38.11 -158.99 REMARK 500 6 SER A 38 125.54 -178.00 REMARK 500 6 LEU A 58 -55.52 -140.21 REMARK 500 6 LEU A 65 43.67 -96.33 REMARK 500 6 ARG A 79 47.48 -84.20 REMARK 500 7 PRO A 4 -166.02 -62.71 REMARK 500 7 SER A 38 137.83 -175.34 REMARK 500 7 LEU A 58 -53.26 -141.48 REMARK 500 7 LYS A 90 91.37 -69.02 REMARK 500 7 PHE B 100 94.03 70.05 REMARK 500 7 SER B 101 -50.90 -154.23 REMARK 500 7 THR B 102 -172.74 53.65 REMARK 500 7 GLU B 103 51.94 179.35 REMARK 500 8 PRO A 4 -172.18 -69.98 REMARK 500 8 GLN A 14 -58.66 -131.98 REMARK 500 8 ARG A 50 -66.99 -128.24 REMARK 500 8 LEU A 58 -59.02 -148.18 REMARK 500 8 VAL A 66 73.43 -107.39 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T2M RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE AF-6 PDZ DOMAIN
DBREF 2AIN A 2 93 UNP P55196 AFAD_HUMAN 987 1077 DBREF 2AIN B 99 104 UNP P11274 BCR_HUMAN 1266 1271
SEQADV 2AIN MET A 1 UNP P55196 INITIATING METHIONINE
SEQRES 1 A 93 MET LYS GLU PRO GLU ILE ILE THR VAL THR LEU LYS LYS SEQRES 2 A 93 GLN ASN GLY MET GLY LEU SER ILE VAL ALA ALA LYS GLY SEQRES 3 A 93 ALA GLY GLN ASP LYS LEU GLY ILE TYR VAL LYS SER VAL SEQRES 4 A 93 VAL LYS GLY GLY ALA ALA ASP VAL ASP GLY ARG LEU ALA SEQRES 5 A 93 ALA GLY ASP GLN LEU LEU SER VAL ASP GLY ARG SER LEU SEQRES 6 A 93 VAL GLY LEU SER GLN GLU ARG ALA ALA GLU LEU MET THR SEQRES 7 A 93 ARG THR SER SER VAL VAL THR LEU GLU VAL ALA LYS GLN SEQRES 8 A 93 GLY ALA SEQRES 1 B 6 LEU PHE SER THR GLU VAL
HELIX 1 1 GLY A 43 GLY A 49 1 7 HELIX 2 2 SER A 69 ARG A 79 1 11
SHEET 1 A 4 GLU A 5 LYS A 12 0 SHEET 2 A 4 VAL A 83 LYS A 90 -1 O VAL A 88 N ILE A 7 SHEET 3 A 4 GLN A 56 VAL A 60 -1 N SER A 59 O GLU A 87 SHEET 4 A 4 ARG A 63 SER A 64 -1 O ARG A 63 N VAL A 60 SHEET 1 B 3 GLY A 33 VAL A 39 0 SHEET 2 B 3 LEU A 19 ALA A 24 -1 N SER A 20 O SER A 38 SHEET 3 B 3 SER B 101 VAL B 104 -1 O THR B 102 N ILE A 21
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000