10 20 30 40 50 60 70 80 2AI5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 29-JUL-05 2AI5
TITLE SOLUTION STRUCTURE OF CYTOCHROME C552, DETERMINED BY TITLE 2 DISTRIBUTED COMPUTING IMPLEMENTATION FOR NMR DATA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-552; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME C552
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 940; SOURCE 4 STRAIN: TK-6
KEYWDS CYTOCHROME C, ELECTRON TRANSPORT, PORPHYRIN, FERROUS IRON
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.NAKAMURA,S.I.ICHIKI,H.TAKASHIMA,S.UCHIYAMA,J.HASEGAWA, AUTHOR 2 Y.KOBAYASHI,Y.SAMBONGI,T.OHKUBO
REVDAT 2 24-FEB-09 2AI5 1 VERSN REVDAT 1 23-MAY-06 2AI5 0
JRNL AUTH S.NAKAMURA,S.I.ICHIKI,H.TAKASHIMA,S.UCHIYAMA, JRNL AUTH 2 J.HASEGAWA,Y.KOBAYASHI,Y.SAMBONGI,T.OHKUBO JRNL TITL STRUCTURE OF CYTOCHROME C552 FROM A MODERATE JRNL TITL 2 THERMOPHILIC BACTERIUM, HYDROGENOPHILUS JRNL TITL 3 THERMOLUTEOLUS: COMPARATIVE STUDY ON THE JRNL TITL 4 THERMOSTABILITY OF CYTOCHROME C JRNL REF BIOCHEMISTRY V. 45 6115 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16681384 JRNL DOI 10.1021/BI0520131
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR XPLOR-NIH V2.0.6 REMARK 3 AUTHORS : SCHWIETERS, C. D. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTRIBUTED COMPUTING
REMARK 4 REMARK 4 2AI5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033923.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 120MM ACETATE BUFFER REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 2MM CYTOCHROME C-552 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR XPLOR-NIH V2.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 4000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE 1H-NMR DATA WERE SUBJECTED TO THE STRUCTURE REMARK 210 DETERMINATION USING DISTRIBUTED COMPUTING IMPLEMENTATIONS.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -67.53 68.20 REMARK 500 1 CYS A 13 -37.05 -136.44 REMARK 500 1 ASP A 15 125.47 176.55 REMARK 500 1 LYS A 19 85.39 -55.51 REMARK 500 1 LYS A 20 -143.47 -96.63 REMARK 500 1 LEU A 42 -74.66 -43.21 REMARK 500 1 SER A 51 -170.30 169.92 REMARK 500 1 VAL A 57 102.66 -42.19 REMARK 500 1 PRO A 58 87.50 -60.80 REMARK 500 1 ASN A 63 72.75 -103.81 REMARK 500 2 CYS A 13 -34.15 -132.27 REMARK 500 2 ASP A 15 124.96 169.39 REMARK 500 2 ALA A 18 45.75 -147.73 REMARK 500 2 LYS A 19 94.22 -42.40 REMARK 500 2 LYS A 20 -89.71 -89.73 REMARK 500 2 LEU A 42 -73.98 -43.08 REMARK 500 2 SER A 51 -175.82 169.76 REMARK 500 2 SER A 56 54.40 -110.09 REMARK 500 2 PRO A 58 88.74 -60.51 REMARK 500 2 ASN A 63 62.10 -104.82 REMARK 500 3 CYS A 13 -36.03 -135.95 REMARK 500 3 ASP A 15 124.08 172.73 REMARK 500 3 LYS A 19 78.36 -60.31 REMARK 500 3 LYS A 20 -141.68 -88.42 REMARK 500 3 ASP A 37 34.26 -88.41 REMARK 500 3 LEU A 42 -73.66 -43.01 REMARK 500 3 SER A 51 -170.09 169.75 REMARK 500 3 PRO A 58 87.14 -60.86 REMARK 500 3 ASN A 63 57.05 -104.40 REMARK 500 4 ASP A 15 123.28 169.06 REMARK 500 4 ALA A 18 45.50 -148.30 REMARK 500 4 LYS A 19 93.64 -43.87 REMARK 500 4 LYS A 20 -89.87 -91.60 REMARK 500 4 LEU A 42 -73.99 -43.24 REMARK 500 4 SER A 51 177.05 169.69 REMARK 500 4 SER A 56 57.39 -108.05 REMARK 500 4 PRO A 58 78.08 -60.61 REMARK 500 4 ASN A 63 69.10 -104.09 REMARK 500 5 GLU A 2 -55.84 -175.69 REMARK 500 5 ASP A 15 122.88 170.66 REMARK 500 5 LYS A 19 86.57 -55.24 REMARK 500 5 LYS A 20 -147.48 -95.01 REMARK 500 5 LEU A 42 -73.90 -43.52 REMARK 500 5 SER A 51 -170.87 169.92 REMARK 500 5 SER A 56 65.34 -107.89 REMARK 500 5 PRO A 58 87.55 -60.59 REMARK 500 5 ASN A 63 64.08 -104.83 REMARK 500 6 GLN A 3 -84.22 -51.09 REMARK 500 6 CYS A 13 -36.82 -135.76 REMARK 500 6 HIS A 14 -178.84 -69.47 REMARK 500 6 ASP A 15 129.53 175.63 REMARK 500 6 LEU A 16 -73.88 -42.75 REMARK 500 6 LYS A 19 156.75 -49.12 REMARK 500 6 LYS A 20 -145.25 178.73 REMARK 500 6 LEU A 42 -73.65 -43.17 REMARK 500 6 SER A 51 -170.91 169.82 REMARK 500 6 SER A 56 51.42 -118.13 REMARK 500 6 PRO A 58 72.43 -60.86 REMARK 500 6 ASN A 63 68.39 -103.93 REMARK 500 7 CYS A 13 -38.36 -137.51 REMARK 500 7 ASP A 15 123.87 173.31 REMARK 500 7 LYS A 19 76.05 -61.70 REMARK 500 7 LYS A 20 -90.69 -79.21 REMARK 500 7 LEU A 42 -73.76 -43.18 REMARK 500 7 SER A 51 -167.34 169.70 REMARK 500 7 PRO A 58 75.67 -60.55 REMARK 500 7 ASN A 63 64.25 -104.34 REMARK 500 7 ILE A 79 108.52 -59.60 REMARK 500 8 GLU A 2 -68.90 -154.73 REMARK 500 8 CYS A 13 -36.91 -136.15 REMARK 500 8 ASP A 15 121.18 169.06 REMARK 500 8 ALA A 18 45.76 -147.05 REMARK 500 8 LYS A 19 91.78 -47.49 REMARK 500 8 LYS A 20 -89.38 -96.54 REMARK 500 8 LEU A 42 -73.13 -48.30 REMARK 500 8 SER A 51 -172.57 169.85 REMARK 500 8 SER A 56 46.36 -98.14 REMARK 500 8 PRO A 58 76.62 -60.75 REMARK 500 8 ASN A 63 58.80 -104.62 REMARK 500 9 CYS A 13 -37.75 -138.63 REMARK 500 9 ASP A 15 126.64 170.77 REMARK 500 9 LYS A 19 74.44 -62.33 REMARK 500 9 LYS A 20 -90.05 -77.68 REMARK 500 9 LEU A 42 -73.73 -43.27 REMARK 500 9 SER A 51 -167.57 169.68 REMARK 500 9 SER A 56 52.24 -118.37 REMARK 500 9 PRO A 58 80.05 -60.65 REMARK 500 9 ASN A 63 60.82 -105.05 REMARK 500 9 ILE A 79 95.69 -69.29 REMARK 500 10 ASP A 15 122.44 169.48 REMARK 500 10 LYS A 20 -143.55 -134.51 REMARK 500 10 LEU A 42 -73.18 -43.11 REMARK 500 10 SER A 51 -164.61 174.16 REMARK 500 10 SER A 56 55.28 -103.39 REMARK 500 10 PRO A 58 87.29 -60.52 REMARK 500 10 ASN A 63 70.76 -104.11 REMARK 500 11 CYS A 13 -36.08 -133.86 REMARK 500 11 ASP A 15 125.19 174.34 REMARK 500 11 LYS A 19 79.64 -59.47 REMARK 500 11 LYS A 20 -90.57 -85.12 REMARK 500 11 LEU A 42 -74.01 -43.26 REMARK 500 11 SER A 51 -172.90 169.76 REMARK 500 11 PRO A 58 92.43 -60.70 REMARK 500 11 ASN A 63 59.39 -104.33 REMARK 500 12 CYS A 13 -36.57 -136.31 REMARK 500 12 ASP A 15 118.10 172.20 REMARK 500 12 LYS A 19 76.82 -61.20 REMARK 500 12 LYS A 20 -143.94 -85.83 REMARK 500 12 LEU A 42 -75.56 -43.05 REMARK 500 12 SER A 51 -179.35 169.71 REMARK 500 12 PRO A 58 77.50 -60.92 REMARK 500 12 ASN A 63 68.10 -105.31 REMARK 500 12 ILE A 79 97.46 -59.39 REMARK 500 13 GLU A 2 -40.04 -147.18 REMARK 500 13 CYS A 13 -36.83 -135.72 REMARK 500 13 ASP A 15 124.83 174.44 REMARK 500 13 LYS A 19 64.42 -65.88 REMARK 500 13 LYS A 20 -90.36 -62.57 REMARK 500 13 LEU A 42 -73.44 -43.05 REMARK 500 13 SER A 51 -178.71 169.79 REMARK 500 13 PRO A 58 77.08 -61.04 REMARK 500 13 ASN A 63 60.85 -105.14 REMARK 500 14 GLU A 2 -60.78 -150.68 REMARK 500 14 CYS A 13 -36.01 -136.61 REMARK 500 14 ASP A 15 121.93 170.07 REMARK 500 14 LYS A 19 84.40 -56.08 REMARK 500 14 LYS A 20 -143.91 -94.61 REMARK 500 14 ASP A 37 40.82 -86.49 REMARK 500 14 LEU A 42 -74.20 -46.94 REMARK 500 14 SER A 51 -168.12 169.66 REMARK 500 14 SER A 56 66.73 -111.68 REMARK 500 14 PRO A 58 86.50 -60.76 REMARK 500 14 ASN A 63 55.83 -104.69 REMARK 500 15 CYS A 13 -37.69 -137.00 REMARK 500 15 ASP A 15 124.73 176.04 REMARK 500 15 LYS A 19 71.34 -63.78 REMARK 500 15 LYS A 20 -90.92 -71.89 REMARK 500 15 LEU A 42 -73.50 -43.40 REMARK 500 15 SER A 51 178.60 169.85 REMARK 500 15 VAL A 57 102.04 -41.60 REMARK 500 15 PRO A 58 88.12 -61.70 REMARK 500 15 ASN A 63 56.80 -104.76 REMARK 500 15 ILE A 79 100.42 -59.23 REMARK 500 16 GLU A 2 -58.16 -158.66 REMARK 500 16 ASP A 15 128.39 170.75 REMARK 500 16 LYS A 20 -147.74 177.42 REMARK 500 16 LEU A 42 -74.52 -43.01 REMARK 500 16 SER A 51 -170.66 173.43 REMARK 500 16 PRO A 58 86.02 -60.74 REMARK 500 16 ASN A 63 64.62 -105.30 REMARK 500 17 CYS A 13 -37.22 -138.47 REMARK 500 17 ASP A 15 124.51 169.87 REMARK 500 17 ALA A 18 75.52 -152.35 REMARK 500 17 LYS A 19 76.23 -61.47 REMARK 500 17 LYS A 20 -90.09 -67.92 REMARK 500 17 LEU A 42 -73.91 -43.14 REMARK 500 17 SER A 51 -176.61 169.62 REMARK 500 17 PRO A 58 88.09 -60.58 REMARK 500 17 ASN A 63 62.07 -105.25 REMARK 500 18 GLU A 2 -43.50 179.70 REMARK 500 18 ASP A 15 125.35 168.23 REMARK 500 18 ALA A 18 45.19 -145.28 REMARK 500 18 LYS A 19 93.87 -43.88 REMARK 500 18 LYS A 20 -90.01 -93.62 REMARK 500 18 LEU A 42 -73.00 -42.99 REMARK 500 18 SER A 51 -177.43 175.95 REMARK 500 18 PRO A 58 86.55 -61.23 REMARK 500 18 ASN A 63 65.71 -104.58 REMARK 500 18 ILE A 79 98.56 -49.63 REMARK 500 19 GLU A 2 -73.89 -172.28 REMARK 500 19 CYS A 13 -35.10 -133.80 REMARK 500 19 ASP A 15 119.73 171.46 REMARK 500 19 LYS A 19 82.09 -57.83 REMARK 500 19 LYS A 20 -145.37 -92.19 REMARK 500 19 LEU A 42 -74.87 -43.93 REMARK 500 19 SER A 51 -178.97 169.69 REMARK 500 19 SER A 56 50.71 -116.35 REMARK 500 19 ASN A 63 65.10 -105.16 REMARK 500 20 GLU A 2 -68.98 64.75 REMARK 500 20 CYS A 13 -36.60 -136.88 REMARK 500 20 ASP A 15 122.92 169.38 REMARK 500 20 ALA A 18 45.52 -155.16 REMARK 500 20 LYS A 19 93.50 -45.69 REMARK 500 20 LYS A 20 -90.09 -79.68 REMARK 500 20 LEU A 42 -74.28 -43.13 REMARK 500 20 SER A 51 -174.24 169.75 REMARK 500 20 PRO A 58 75.32 -61.01 REMARK 500 20 ASN A 63 62.66 -105.74 REMARK 500 20 ILE A 79 98.37 -66.70 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 HEC A 81 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 14 NE2 REMARK 620 2 MET A 59 SD 174.5 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 81
DBREF 2AI5 A 1 80 UNP P15452 CY552_HYDTH 19 98
SEQRES 1 A 80 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 A 80 HIS ASP LEU LYS ALA LYS LYS VAL GLY PRO ALA TYR ALA SEQRES 3 A 80 ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS ASP ALA VAL SEQRES 4 A 80 ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY GLY SER GLY SEQRES 5 A 80 VAL TRP GLY SER VAL PRO MET PRO PRO GLN ASN VAL THR SEQRES 6 A 80 ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP ILE LEU SER SEQRES 7 A 80 ILE LYS
HET HEC A 81 75
HETNAM HEC HEME C
FORMUL 2 HEC C34 H34 FE N4 O4
HELIX 1 1 GLU A 2 GLY A 9 1 8 HELIX 2 2 CYS A 10 CYS A 13 5 4 HELIX 3 3 ALA A 24 GLY A 34 1 11 HELIX 4 4 ASP A 37 LYS A 47 1 11 HELIX 5 5 THR A 65 ILE A 79 1 15
LINK CAB HEC A 81 SG CYS A 10 1555 1555 1.81 LINK CAC HEC A 81 SG CYS A 13 1555 1555 1.81 LINK FE HEC A 81 NE2 HIS A 14 1555 1555 2.20 LINK FE HEC A 81 SD MET A 59 1555 1555 2.13
SITE 1 AC1 21 LYS A 8 CYS A 10 ALA A 12 CYS A 13 SITE 2 AC1 21 HIS A 14 VAL A 21 TYR A 25 TYR A 41 SITE 3 AC1 21 LEU A 42 LYS A 45 ILE A 46 SER A 51 SITE 4 AC1 21 GLY A 52 VAL A 53 TRP A 54 GLY A 55 SITE 5 AC1 21 VAL A 57 MET A 59 PRO A 60 GLN A 62 SITE 6 AC1 21 LEU A 72
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000