10 20 30 40 50 60 70 80 2AEB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/HYDROLASE INHIBITOR 21-JUL-05 2AEB
TITLE CRYSTAL STRUCTURE OF HUMAN ARGINASE I AT 1.29 A RESOLUTION AND TITLE 2 EXPLORATION OF INHIBITION IN IMMUNE RESPONSE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HYDROLASE, BINUCLEAR MANGANESE CLUSTER, BORONIC ACID INHIBITOR, KEYWDS 2 PERFECTLY TWINNED CRYSTAL, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR L.DI COSTANZO,G.SABIO,A.MORA,P.C.RODRIGUEZ,A.C.OCHOA,F.CENTENO, AUTHOR 2 D.W.CHRISTIANSON
REVDAT 6 03-APR-13 2AEB 1 REMARK REVDAT 5 27-JUL-11 2AEB 1 REVDAT REVDAT 4 13-JUL-11 2AEB 1 VERSN REVDAT 3 24-FEB-09 2AEB 1 VERSN REVDAT 2 27-SEP-05 2AEB 1 JRNL REVDAT 1 06-SEP-05 2AEB 0
JRNL AUTH L.DI COSTANZO,G.SABIO,A.MORA,P.C.RODRIGUEZ,A.C.OCHOA, JRNL AUTH 2 F.CENTENO,D.W.CHRISTIANSON JRNL TITL CRYSTAL STRUCTURE OF HUMAN ARGINASE I AT 1.29 A RESOLUTION JRNL TITL 2 AND EXPLORATION OF INHIBITION IN THE IMMUNE RESPONSE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 13058 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16141327 JRNL DOI 10.1073/PNAS.0504027102
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.CAMA,D.M.COLLELUORI,F.A.EMIG,H.SHIN,S.W.KIM,N.N.KIM, REMARK 1 AUTH 2 A.M.TRAISH,D.E.ASH,D.W.CHRISTIANSON REMARK 1 TITL HUMAN ARGINASE II: CRYSTAL STRUCTURE AND PHYSIOLOGICAL ROLE REMARK 1 TITL 2 IN MALE AND FEMALE SEXUAL AROUSAL REMARK 1 REF BIOCHEMISTRY V. 42 8445 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 12859189 REMARK 1 DOI 10.1021/BI034340J REMARK 1 REFERENCE 2 REMARK 1 AUTH J.D.COX,N.N.KIM,A.M.TRAISH,D.W.CHRISTIANSON REMARK 1 TITL ARGINASE-BORONIC ACID COMPLEX HIGHLIGHTS A PHYSIOLOGICAL REMARK 1 TITL 2 ROLE IN ERECTILE FUNCTION REMARK 1 REF NAT.STRUCT.BIOL. V. 6 1043 1999 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 1052097 REMARK 1 DOI 10.1300/J010V02N02_04
REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.165 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 7526 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 150499 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.137 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DUE TO POORLY DEFINED DENSITY, THE REMARK 3 FOLLOWING RESIDUES: A5, A48 (NZ), A222 (SIDE CHAINS), B41 (SIDE REMARK 3 CHAINS), B48 (SIDE CHAINS), B89 (NZ), B222 (SIDE CHAINS) AND B224 REMARK 3 (SIDE CHAINS) HAVE BEEN MODELED AT MINOR OCCUPANCY. BECAUSE PART REMARK 3 OF A DISORDERED SIDE CHAINS, RESIDUES A83 AND B217 HAVE REMARK 3 DISORDERED DENSITY. THEREFORE, HYDROGENS ARE NOT PLACED IN THE REMARK 3 SIDECHAINS OF THESE TWO RESIDUE. REFINED TWIN FRACTIONS: 0.46. REMARK 3 TWIN OPERATOR: -H, -K, L
REMARK 4 REMARK 4 2AEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033790.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.912400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 150499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 1.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1D3V REMARK 200 REMARK 200 REMARK: DATA WERE SCALED AS SG P3.
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEGMME 5000, BIS TRIS, PH 7.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 323.0K, PH 7.10
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 91.42200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 45.71100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 79.17377 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1523 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2518 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 319 REMARK 465 PRO A 320 REMARK 465 PRO A 321 REMARK 465 LYS A 322 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 314 REMARK 465 ILE B 315 REMARK 465 ASP B 316 REMARK 465 TYR B 317 REMARK 465 LEU B 318 REMARK 465 ASN B 319 REMARK 465 PRO B 320 REMARK 465 PRO B 321 REMARK 465 LYS B 322
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 HIS A 111 CB - CG - CD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 HIS A 111 CG - ND1 - CE1 ANGL. DEV. = 9.7 DEGREES REMARK 500 GLY A 138 C - N - CA ANGL. DEV. = 14.0 DEGREES REMARK 500 HIS A 187 CG - ND1 - CE1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 205 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 225 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 HIS A 228 CG - ND1 - CE1 ANGL. DEV. = 10.8 DEGREES REMARK 500 HIS A 228 ND1 - CE1 - NE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 234 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 PHE A 240 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 HIS A 312 CG - ND1 - CE1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR B 50 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 92 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 HIS B 111 CG - ND1 - CE1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 180 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR B 188 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR B 197 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 HIS B 228 CG - ND1 - CE1 ANGL. DEV. = 8.7 DEGREES REMARK 500 TYR B 259 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 65.15 -153.39 REMARK 500 GLN A 65 -118.26 51.10 REMARK 500 ASP A 124 148.03 -171.65 REMARK 500 ARG A 180 8.63 -156.88 REMARK 500 ASP A 181 78.05 -151.20 REMARK 500 ARG B 6 85.09 -150.17 REMARK 500 GLN B 43 -151.82 -100.61 REMARK 500 GLN B 65 -120.67 46.07 REMARK 500 ASP B 124 149.38 -172.30 REMARK 500 ARG B 180 8.63 -155.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 44 CYS A 45 -141.39 REMARK 500 GLU B 44 CYS B 45 -143.62 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A2362 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 234 OD1 91.6 REMARK 620 3 ASP A 124 OD1 93.9 135.1 REMARK 620 4 ASP A 234 OD2 96.8 55.7 79.5 REMARK 620 5 ABH A 551 O1 94.6 130.3 93.5 167.0 REMARK 620 6 ASP A 232 OD2 172.2 93.5 86.6 90.9 77.6 REMARK 620 7 ABH A 551 O3 104.4 76.9 143.1 128.3 53.8 71.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A2363 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ABH A 551 O2 REMARK 620 2 ABH A 551 O1 61.0 REMARK 620 3 ASP A 124 OD2 159.1 98.2 REMARK 620 4 ASP A 128 OD2 90.7 93.1 87.7 REMARK 620 5 ASP A 232 OD2 90.9 76.8 86.4 167.5 REMARK 620 6 HIS A 101 ND1 105.8 166.7 95.0 88.0 103.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1362 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 126 ND1 REMARK 620 2 ASP B 234 OD1 109.0 REMARK 620 3 ABH B 552 O3 101.4 126.5 REMARK 620 4 ASP B 124 OD1 94.6 79.1 141.3 REMARK 620 5 ASP B 232 OD2 170.3 80.6 73.0 85.6 REMARK 620 6 ABH B 552 O1 95.7 153.7 53.5 90.2 74.6 REMARK 620 7 ASP B 234 OD2 93.1 58.3 77.5 136.9 93.4 131.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1363 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 ASP B 232 OD2 89.3 REMARK 620 3 ABH B 552 O2 160.3 89.9 REMARK 620 4 ASP B 128 OD1 84.8 167.5 91.9 REMARK 620 5 ABH B 552 O1 100.4 78.1 60.3 92.0 REMARK 620 6 HIS B 101 ND1 94.7 103.7 104.6 87.8 164.8 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABH A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABH B 552
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZAV RELATED DB: PDB REMARK 900 UNLIGANDED HUMAN ARGINASE I REMARK 900 RELATED ID: 1D3V RELATED DB: PDB REMARK 900 ARGINASE I FROM RAT LIVER COMPLEXED WITH ABH. REMARK 900 RELATED ID: 1WVA RELATED DB: PDB REMARK 900 HUMAN ARGINASE I-BEC COMPLEX
DBREF 2AEB A 1 322 UNP P05089 ARGI1_HUMAN 1 322 DBREF 2AEB B 1 322 UNP P05089 ARGI1_HUMAN 1 322
SEQRES 1 A 322 MET SER ALA LYS SER ARG THR ILE GLY ILE ILE GLY ALA SEQRES 2 A 322 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU GLU SEQRES 3 A 322 GLY PRO THR VAL LEU ARG LYS ALA GLY LEU LEU GLU LYS SEQRES 4 A 322 LEU LYS GLU GLN GLU CYS ASP VAL LYS ASP TYR GLY ASP SEQRES 5 A 322 LEU PRO PHE ALA ASP ILE PRO ASN ASP SER PRO PHE GLN SEQRES 6 A 322 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA SER GLU SEQRES 7 A 322 GLN LEU ALA GLY LYS VAL ALA GLU VAL LYS LYS ASN GLY SEQRES 8 A 322 ARG ILE SER LEU VAL LEU GLY GLY ASP HIS SER LEU ALA SEQRES 9 A 322 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 A 322 LEU GLY VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 A 322 THR PRO LEU THR THR THR SER GLY ASN LEU HIS GLY GLN SEQRES 12 A 322 PRO VAL SER PHE LEU LEU LYS GLU LEU LYS GLY LYS ILE SEQRES 13 A 322 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 A 322 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 A 322 ASP PRO GLY GLU HIS TYR ILE LEU LYS THR LEU GLY ILE SEQRES 16 A 322 LYS TYR PHE SER MET THR GLU VAL ASP ARG LEU GLY ILE SEQRES 17 A 322 GLY LYS VAL MET GLU GLU THR LEU SER TYR LEU LEU GLY SEQRES 18 A 322 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 A 322 GLY LEU ASP PRO SER PHE THR PRO ALA THR GLY THR PRO SEQRES 20 A 322 VAL VAL GLY GLY LEU THR TYR ARG GLU GLY LEU TYR ILE SEQRES 21 A 322 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 A 322 ASP ILE MET GLU VAL ASN PRO SER LEU GLY LYS THR PRO SEQRES 23 A 322 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA ILE SEQRES 24 A 322 THR LEU ALA CYS PHE GLY LEU ALA ARG GLU GLY ASN HIS SEQRES 25 A 322 LYS PRO ILE ASP TYR LEU ASN PRO PRO LYS SEQRES 1 B 322 MET SER ALA LYS SER ARG THR ILE GLY ILE ILE GLY ALA SEQRES 2 B 322 PRO PHE SER LYS GLY GLN PRO ARG GLY GLY VAL GLU GLU SEQRES 3 B 322 GLY PRO THR VAL LEU ARG LYS ALA GLY LEU LEU GLU LYS SEQRES 4 B 322 LEU LYS GLU GLN GLU CYS ASP VAL LYS ASP TYR GLY ASP SEQRES 5 B 322 LEU PRO PHE ALA ASP ILE PRO ASN ASP SER PRO PHE GLN SEQRES 6 B 322 ILE VAL LYS ASN PRO ARG SER VAL GLY LYS ALA SER GLU SEQRES 7 B 322 GLN LEU ALA GLY LYS VAL ALA GLU VAL LYS LYS ASN GLY SEQRES 8 B 322 ARG ILE SER LEU VAL LEU GLY GLY ASP HIS SER LEU ALA SEQRES 9 B 322 ILE GLY SER ILE SER GLY HIS ALA ARG VAL HIS PRO ASP SEQRES 10 B 322 LEU GLY VAL ILE TRP VAL ASP ALA HIS THR ASP ILE ASN SEQRES 11 B 322 THR PRO LEU THR THR THR SER GLY ASN LEU HIS GLY GLN SEQRES 12 B 322 PRO VAL SER PHE LEU LEU LYS GLU LEU LYS GLY LYS ILE SEQRES 13 B 322 PRO ASP VAL PRO GLY PHE SER TRP VAL THR PRO CYS ILE SEQRES 14 B 322 SER ALA LYS ASP ILE VAL TYR ILE GLY LEU ARG ASP VAL SEQRES 15 B 322 ASP PRO GLY GLU HIS TYR ILE LEU LYS THR LEU GLY ILE SEQRES 16 B 322 LYS TYR PHE SER MET THR GLU VAL ASP ARG LEU GLY ILE SEQRES 17 B 322 GLY LYS VAL MET GLU GLU THR LEU SER TYR LEU LEU GLY SEQRES 18 B 322 ARG LYS LYS ARG PRO ILE HIS LEU SER PHE ASP VAL ASP SEQRES 19 B 322 GLY LEU ASP PRO SER PHE THR PRO ALA THR GLY THR PRO SEQRES 20 B 322 VAL VAL GLY GLY LEU THR TYR ARG GLU GLY LEU TYR ILE SEQRES 21 B 322 THR GLU GLU ILE TYR LYS THR GLY LEU LEU SER GLY LEU SEQRES 22 B 322 ASP ILE MET GLU VAL ASN PRO SER LEU GLY LYS THR PRO SEQRES 23 B 322 GLU GLU VAL THR ARG THR VAL ASN THR ALA VAL ALA ILE SEQRES 24 B 322 THR LEU ALA CYS PHE GLY LEU ALA ARG GLU GLY ASN HIS SEQRES 25 B 322 LYS PRO ILE ASP TYR LEU ASN PRO PRO LYS
HET MN B1362 1 HET MN B1363 1 HET MN A2362 1 HET MN A2363 1 HET ABH A 551 28 HET ABH B 552 28
HETNAM MN MANGANESE (II) ION HETNAM ABH 2(S)-AMINO-6-BORONOHEXANOIC ACID
FORMUL 3 MN 4(MN 2+) FORMUL 7 ABH 2(C6 H15 B N O5 1-) FORMUL 9 HOH *384(H2 O)
HELIX 1 1 ARG A 21 GLU A 25 5 5 HELIX 2 2 GLU A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLN A 43 1 9 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 LEU A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 LYS A 150 LYS A 153 5 4 HELIX 10 10 SER A 170 LYS A 172 5 3 HELIX 11 11 ASP A 183 GLY A 194 1 12 HELIX 12 12 MET A 200 GLY A 207 1 8 HELIX 13 13 GLY A 207 GLY A 221 1 15 HELIX 14 14 ASP A 234 LEU A 236 5 3 HELIX 15 15 THR A 253 GLY A 268 1 16 HELIX 16 16 ASN A 279 GLY A 283 5 5 HELIX 17 17 THR A 285 PHE A 304 1 20 HELIX 18 18 ARG B 21 GLU B 25 5 5 HELIX 19 19 GLU B 26 ALA B 34 1 9 HELIX 20 20 GLY B 35 GLN B 43 1 9 HELIX 21 21 ASN B 69 ASN B 90 1 22 HELIX 22 22 SER B 102 HIS B 115 1 14 HELIX 23 23 ASN B 139 GLY B 142 5 4 HELIX 24 24 GLN B 143 LEU B 149 1 7 HELIX 25 25 LYS B 150 ILE B 156 5 7 HELIX 26 26 SER B 170 LYS B 172 5 3 HELIX 27 27 ASP B 183 GLY B 194 1 12 HELIX 28 28 SER B 199 GLY B 221 1 23 HELIX 29 29 ASP B 234 LEU B 236 5 3 HELIX 30 30 THR B 253 GLY B 268 1 16 HELIX 31 31 ASN B 279 GLY B 283 5 5 HELIX 32 32 THR B 285 PHE B 304 1 20
SHEET 1 A 8 ASP A 46 ASP A 52 0 SHEET 2 A 8 THR A 7 ALA A 13 1 N GLY A 12 O GLY A 51 SHEET 3 A 8 ILE A 93 GLY A 98 1 O ILE A 93 N GLY A 9 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N ILE A 227 O SER A 271 SHEET 6 A 8 GLY A 119 VAL A 123 1 N VAL A 123 O ASP A 232 SHEET 7 A 8 ILE A 174 LEU A 179 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 SER A 199 1 O PHE A 198 N GLY A 178 SHEET 1 B 8 VAL B 47 ASP B 52 0 SHEET 2 B 8 ILE B 8 GLY B 12 1 N GLY B 12 O GLY B 51 SHEET 3 B 8 ILE B 93 LEU B 97 1 O ILE B 93 N GLY B 9 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N ILE B 227 O SER B 271 SHEET 6 B 8 GLY B 119 VAL B 123 1 N GLY B 119 O HIS B 228 SHEET 7 B 8 ILE B 174 ILE B 177 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 PHE B 198 1 O PHE B 198 N TYR B 176
LINK MN MN A2362 ND1 HIS A 126 1555 1555 2.23 LINK MN MN A2362 OD1 ASP A 234 1555 1555 2.16 LINK MN MN A2362 OD1 ASP A 124 1555 1555 2.19 LINK MN MN A2362 OD2 ASP A 234 1555 1555 2.39 LINK MN MN A2362 O1 ABH A 551 1555 1555 2.13 LINK MN MN A2362 OD2 ASP A 232 1555 1555 2.29 LINK MN MN A2363 O2 ABH A 551 1555 1555 2.26 LINK MN MN A2363 O1 ABH A 551 1555 1555 2.23 LINK MN MN A2363 OD2 ASP A 124 1555 1555 2.07 LINK MN MN A2363 OD2 ASP A 128 1555 1555 2.09 LINK MN MN A2363 OD2 ASP A 232 1555 1555 2.24 LINK MN MN A2363 ND1 HIS A 101 1555 1555 2.22 LINK MN MN B1362 ND1 HIS B 126 1555 1555 2.28 LINK MN MN B1362 OD1 ASP B 234 1555 1555 2.39 LINK MN MN B1362 O3 ABH B 552 1555 1555 2.74 LINK MN MN B1362 OD1 ASP B 124 1555 1555 2.21 LINK MN MN B1362 OD2 ASP B 232 1555 1555 2.32 LINK MN MN B1362 O1 ABH B 552 1555 1555 2.21 LINK MN MN B1362 OD2 ASP B 234 1555 1555 2.10 LINK MN MN B1363 OD2 ASP B 124 1555 1555 2.15 LINK MN MN B1363 OD2 ASP B 232 1555 1555 2.23 LINK MN MN B1363 O2 ABH B 552 1555 1555 2.27 LINK MN MN B1363 OD1 ASP B 128 1555 1555 2.13 LINK MN MN B1363 O1 ABH B 552 1555 1555 2.13 LINK MN MN B1363 ND1 HIS B 101 1555 1555 2.23 LINK MN MN A2362 O3 ABH A 551 1555 1555 2.80
CISPEP 1 GLY A 98 GLY A 99 0 1.97 CISPEP 2 GLY B 98 GLY B 99 0 -3.39
SITE 1 AC1 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC1 6 ABH B 552 MN B1363 SITE 1 AC2 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC2 6 ABH B 552 MN B1362 SITE 1 AC3 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC3 6 ABH A 551 MN A2363 SITE 1 AC4 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC4 6 ABH A 551 MN A2362 SITE 1 AC5 20 HIS A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 AC5 20 ASN A 130 SER A 137 HIS A 141 ASP A 183 SITE 3 AC5 20 GLU A 186 ASP A 232 ASP A 234 GLU A 277 SITE 4 AC5 20 MN A2362 MN A2363 HOH A2369 HOH A2372 SITE 5 AC5 20 HOH A2391 HOH A2394 HOH A2396 HOH A2402 SITE 1 AC6 20 HIS B 101 ASP B 124 HIS B 126 ASP B 128 SITE 2 AC6 20 ASN B 130 SER B 137 HIS B 141 ASP B 183 SITE 3 AC6 20 GLU B 186 ASP B 232 ASP B 234 GLU B 277 SITE 4 AC6 20 MN B1362 MN B1363 HOH B1390 HOH B1395 SITE 5 AC6 20 HOH B1403 HOH B1416 HOH B1453 HOH B1478
CRYST1 91.422 91.422 69.637 90.00 90.00 120.00 P 3 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010938 0.006315 0.000000 0.00000
SCALE2 0.000000 0.012630 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014360 0.00000