10 20 30 40 50 60 70 80 2ADN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 20-JUL-05 2ADN
TITLE SOLUTION STRUCTURE OF THE BACTERIAL ANTITOXIN CCDA: TITLE 2 IMPLICATIONS FOR DNA AND TOXIN BINDING
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCDA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CCDA CONFORMER B, LETA CONFORMER B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SG22622; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKK-/CCDAR70K/
KEYWDS RIBBON-HELIX-HELIX, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
AUTHOR T.MADL,L.VANMELDEREN,M.OBERER,W.KELLER,L.KHATAI,K.ZANGGER
REVDAT 3 24-FEB-09 2ADN 1 VERSN REVDAT 2 10-APR-07 2ADN 1 JRNL REVDAT 1 22-AUG-06 2ADN 0
JRNL AUTH T.MADL,L.VAN MELDEREN,N.MINE,M.RESPONDEK,M.OBERER, JRNL AUTH 2 W.KELLER,L.KHATAI,K.ZANGGER JRNL TITL STRUCTURAL BASIS FOR NUCLEIC ACID AND TOXIN JRNL TITL 2 RECOGNITION OF THE BACTERIAL ANTITOXIN CCDA JRNL REF J.MOL.BIOL. V. 364 170 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17007877 JRNL DOI 10.1016/J.JMB.2006.08.082
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ADN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033770.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM CCDA U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER; 0.5MM CCDA U REMARK 210 -15N,13C; 20MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA, 2D REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, NMRPIPE, VNMR, REMARK 210 NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 132 N ALA B 136 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 94.84 -65.82 REMARK 500 VAL A 9 -120.73 -84.32 REMARK 500 ASP A 10 -32.74 75.27 REMARK 500 ASP A 21 62.78 168.25 REMARK 500 VAL A 22 69.62 -59.67 REMARK 500 ARG A 40 44.79 -167.30 REMARK 500 ALA A 41 -73.82 66.90 REMARK 500 LYS A 45 -74.75 -169.60 REMARK 500 VAL A 46 -69.70 67.01 REMARK 500 GLU A 47 111.11 -160.54 REMARK 500 GLN A 49 109.24 -179.34 REMARK 500 MET A 52 -77.15 63.76 REMARK 500 GLU A 54 -89.81 -131.42 REMARK 500 VAL A 55 25.62 -157.09 REMARK 500 ALA A 56 -71.84 -172.19 REMARK 500 ARG A 57 124.70 157.95 REMARK 500 PHE A 58 -99.46 -133.90 REMARK 500 ILE A 59 159.25 58.96 REMARK 500 ALA A 66 -108.60 -71.62 REMARK 500 ASP A 67 40.12 173.61 REMARK 500 LYS A 70 179.41 61.68 REMARK 500 THR B 108 91.25 -55.84 REMARK 500 VAL B 109 -108.79 -82.40 REMARK 500 ASP B 110 -41.44 73.44 REMARK 500 ASP B 121 62.37 169.78 REMARK 500 VAL B 122 69.43 -63.24 REMARK 500 ILE B 124 -33.71 -132.72 REMARK 500 LEU B 139 68.60 29.64 REMARK 500 ARG B 140 55.82 -151.33 REMARK 500 ALA B 141 -165.99 -56.64 REMARK 500 TRP B 144 79.29 -169.87 REMARK 500 GLU B 147 -72.97 -98.85 REMARK 500 MET B 152 93.31 -172.11 REMARK 500 GLU B 154 -95.81 -136.25 REMARK 500 VAL B 155 94.97 142.84 REMARK 500 ALA B 156 -65.84 -172.91 REMARK 500 ARG B 157 133.00 -177.18 REMARK 500 PHE B 158 71.30 -163.49 REMARK 500 SER B 164 -59.88 -168.71 REMARK 500 ALA B 166 -72.09 66.42 REMARK 500 ASP B 167 -40.48 -179.76 REMARK 500 GLU B 168 37.58 -147.68 REMARK 500 ASP B 171 -68.34 -133.86 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ADL RELATED DB: PDB REMARK 900 CCDA CONFORMER A
DBREF 2ADN A 1 72 UNP Q9S0Z5 Q9S0Z5_ECOLI 1 72 DBREF 2ADN B 101 172 UNP Q9S0Z5 Q9S0Z5_ECOLI 1 72
SEQADV 2ADN LYS A 70 UNP Q9S0Z5 ARG 70 ENGINEERED SEQADV 2ADN LYS B 170 UNP Q9S0Z5 ARG 70 ENGINEERED
SEQRES 1 A 72 MET LYS GLN ARG ILE THR VAL THR VAL ASP SER ASP SER SEQRES 2 A 72 TYR GLN LEU LEU LYS ALA TYR ASP VAL ASN ILE SER GLY SEQRES 3 A 72 LEU VAL SER THR THR MET GLN ASN GLU ALA ARG ARG LEU SEQRES 4 A 72 ARG ALA GLU ARG TRP LYS VAL GLU ASN GLN GLU GLY MET SEQRES 5 A 72 VAL GLU VAL ALA ARG PHE ILE GLU MET ASN GLY SER PHE SEQRES 6 A 72 ALA ASP GLU ASN LYS ASP TRP SEQRES 1 B 72 MET LYS GLN ARG ILE THR VAL THR VAL ASP SER ASP SER SEQRES 2 B 72 TYR GLN LEU LEU LYS ALA TYR ASP VAL ASN ILE SER GLY SEQRES 3 B 72 LEU VAL SER THR THR MET GLN ASN GLU ALA ARG ARG LEU SEQRES 4 B 72 ARG ALA GLU ARG TRP LYS VAL GLU ASN GLN GLU GLY MET SEQRES 5 B 72 VAL GLU VAL ALA ARG PHE ILE GLU MET ASN GLY SER PHE SEQRES 6 B 72 ALA ASP GLU ASN LYS ASP TRP
HELIX 1 1 SER A 13 TYR A 20 1 8 HELIX 2 2 ILE A 24 ARG A 38 1 15 HELIX 3 3 SER B 113 ALA B 119 1 7 HELIX 4 4 ILE B 124 ARG B 138 1 15
SHEET 1 A 2 ARG A 4 VAL A 9 0 SHEET 2 A 2 GLN B 103 THR B 108 -1 O VAL B 107 N ILE A 5
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000