10 20 30 40 50 60 70 80 2ABU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 16-JUL-05 2ABU
TITLE HUMAN 12-LIPOXYGENASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIDONATE 12-LIPOXYGENASE, 12S-TYPE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 12-LOX, PLATELET-TYPE LIPOXYGENASE 12; COMPND 5 EC: 1.13.11.31
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN
KEYWDS HUMAN 12-LIPOXYGENASE
EXPDTA THEORETICAL MODEL
AUTHOR P.ARUL PRAKASAM,P.P.MATHUR
REVDAT 1 02-AUG-05 2ABU 0
JRNL AUTH P.ARUL PRAKASAM,P.P.MATHUR JRNL TITL STRUCTURE OF HUMAN 12-LIPOXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER 7V7 REMARK 3 AUTHORS : A. SALI & T.L. BLUNDELL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ABU COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-2005. REMARK 100 THE RCSB ID CODE IS RCSB033721.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE WAS PRODUCED BY MODELLER7V7 AND REMARK 220 SUBJECTED TO 1 NANOSECOND MOLECULAR DYNAMICS SIMULATION
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 189 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 MET A 577 CG - SD - CE ANGL. DEV. =-17.5 DEGREES REMARK 500 GLN A 585 OE1 - CD - NE2 ANGL. DEV. = 15.5 DEGREES REMARK 500 GLN A 585 CG - CD - OE1 ANGL. DEV. =-75.9 DEGREES REMARK 500 GLN A 585 CG - CD - NE2 ANGL. DEV. =-23.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 112 151.26 86.32 REMARK 500 ALA A 153 159.12 92.53 REMARK 500 SER A 248 -56.78 79.88
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ABT RELATED DB: PDB REMARK 900 HUMAN 15-LIPOXYGENASE REMARK 900 RELATED ID: 2ABV RELATED DB: PDB REMARK 900 HUMAN 5-LIPOXYGENASE
DBREF 2ABU A 1 662 UNP P18054 LOX12_HUMAN 1 662
SEQRES 1 A 662 GLY ARG TYR ARG ILE ARG VAL ALA THR GLY ALA TRP LEU SEQRES 2 A 662 PHE SER GLY SER TYR ASN ARG VAL GLN LEU TRP LEU VAL SEQRES 3 A 662 GLY THR ARG GLY GLU ALA GLU LEU GLU LEU GLN LEU ARG SEQRES 4 A 662 PRO ALA ARG GLY GLU GLU GLU GLU PHE ASP HIS ASP VAL SEQRES 5 A 662 ALA GLU ASP LEU GLY LEU LEU GLN PHE VAL ARG LEU ARG SEQRES 6 A 662 LYS HIS HIS TRP LEU VAL ASP ASP ALA TRP PHE CYS ASP SEQRES 7 A 662 ARG ILE THR VAL GLN GLY PRO GLY ALA CYS ALA GLU VAL SEQRES 8 A 662 ALA PHE PRO CYS TYR ARG TRP VAL GLN GLY GLU ASP ILE SEQRES 9 A 662 LEU SER LEU PRO GLU GLY THR ALA ARG LEU PRO GLY ASP SEQRES 10 A 662 ASN ALA LEU ASP MET PHE GLN LYS HIS ARG GLU LYS GLU SEQRES 11 A 662 LEU LYS ASP ARG GLN GLN ILE TYR CYS TRP ALA THR TRP SEQRES 12 A 662 LYS GLU GLY LEU PRO LEU THR ILE ALA ALA ASP ARG LYS SEQRES 13 A 662 ASP ASP LEU PRO PRO ASN MET ARG PHE HIS GLU GLU LYS SEQRES 14 A 662 ARG LEU ASP PHE GLU TRP THR LEU LYS ALA GLY ALA LEU SEQRES 15 A 662 GLU MET ALA LEU LYS ARG VAL TYR THR LEU LEU SER SER SEQRES 16 A 662 TRP ASN CYS LEU GLU ASP PHE ASP GLN ILE PHE TRP GLY SEQRES 17 A 662 GLN LYS SER ALA LEU ALA GLU LYS VAL ARG GLN CYS TRP SEQRES 18 A 662 GLN ASP ASP GLU LEU PHE SER TYR GLN PHE LEU ASN GLY SEQRES 19 A 662 ALA ASN PRO MET LEU LEU ARG ARG SER THR SER LEU PRO SEQRES 20 A 662 SER ARG LEU VAL LEU PRO SER GLY MET GLU GLU LEU GLN SEQRES 21 A 662 ALA GLN LEU GLU LYS GLU LEU GLN ASN GLY SER LEU PHE SEQRES 22 A 662 GLU ALA ASP PHE ILE LEU LEU ASP GLY ILE PRO ALA ASN SEQRES 23 A 662 VAL ILE ARG GLY GLU LYS GLN TYR LEU ALA ALA PRO LEU SEQRES 24 A 662 VAL MET LEU LYS MET GLU PRO ASN GLY LYS LEU GLN PRO SEQRES 25 A 662 MET VAL ILE GLN ILE GLN PRO PRO SER PRO SER SER PRO SEQRES 26 A 662 THR PRO THR LEU PHE LEU PRO SER ASP PRO PRO LEU ALA SEQRES 27 A 662 TRP LEU LEU ALA LYS SER TRP VAL ARG ASN SER ASP PHE SEQRES 28 A 662 GLN LEU HIS GLU ILE GLN TYR HIS LEU LEU ASN THR HIS SEQRES 29 A 662 LEU VAL ALA GLU VAL ILE ALA VAL ALA THR MET ARG CYS SEQRES 30 A 662 LEU PRO GLY LEU HIS PRO ILE PHE LYS PHE LEU ILE PRO SEQRES 31 A 662 HIS ILE ARG TYR THR MET GLU ILE ASN THR ARG ALA ARG SEQRES 32 A 662 THR GLN LEU ILE SER ASP GLY GLY ILE PHE ASP LYS ALA SEQRES 33 A 662 VAL SER THR GLY GLY GLY GLY HIS VAL GLN LEU LEU ARG SEQRES 34 A 662 ARG ALA ALA ALA GLN LEU THR TYR CYS SER LEU CYS PRO SEQRES 35 A 662 PRO ASP ASP LEU ALA ASP ARG GLY LEU LEU GLY LEU PRO SEQRES 36 A 662 GLY ALA LEU TYR ALA HIS ASP ALA LEU ARG LEU TRP GLU SEQRES 37 A 662 ILE ILE ALA ARG TYR VAL GLU GLY ILE VAL HIS LEU PHE SEQRES 38 A 662 TYR GLN ARG ASP ASP ILE VAL LYS GLY ASP PRO GLU LEU SEQRES 39 A 662 GLN ALA TRP CYS ARG GLU ILE THR GLU VAL GLY LEU CYS SEQRES 40 A 662 GLN ALA GLN ASP ARG GLY PHE PRO VAL SER PHE GLN SER SEQRES 41 A 662 GLN SER GLN LEU CYS HIS PHE LEU THR MET CYS VAL PHE SEQRES 42 A 662 THR CYS THR ALA GLN HIS ALA ALA ILE ASN GLN GLY GLN SEQRES 43 A 662 LEU ASP TRP TYR ALA TRP VAL PRO ASN ALA PRO CYS THR SEQRES 44 A 662 MET ARG MET PRO PRO PRO THR THR LYS GLU ASP VAL THR SEQRES 45 A 662 MET ALA THR VAL MET GLY SER LEU PRO ASP VAL ARG GLN SEQRES 46 A 662 ALA CYS LEU GLN MET ALA ILE SER TRP HIS LEU SER ARG SEQRES 47 A 662 ARG GLN PRO ASP MET VAL PRO LEU GLY HIS HIS LYS GLU SEQRES 48 A 662 LYS TYR PHE SER GLY PRO LYS PRO LYS ALA VAL LEU ASN SEQRES 49 A 662 GLN PHE ARG THR ASP LEU GLU LYS LEU GLU LYS GLU ILE SEQRES 50 A 662 THR ALA ARG ASN GLU GLN LEU ASP TRP PRO TYR GLU TYR SEQRES 51 A 662 LEU LYS PRO SER CYS ILE GLU ASN SER VAL THR ILE
HET FE2 A 663 1
HETNAM FE2 FE (II) ION
FORMUL 2 FE2 FE 2+
HELIX 1 1 PHE A 123 TYR A 138 1 16 HELIX 2 2 ARG A 155 LEU A 159 5 5 HELIX 3 3 PRO A 160 ARG A 164 5 5 HELIX 4 4 HIS A 166 PHE A 173 1 8 HELIX 5 5 ARG A 188 SER A 194 5 7 HELIX 6 6 CYS A 198 ILE A 205 5 8 HELIX 7 7 SER A 211 TRP A 221 1 11 HELIX 8 8 ASP A 223 GLY A 234 1 12 HELIX 9 9 MET A 256 GLY A 270 1 15 HELIX 10 10 ILE A 278 ASP A 281 5 4 HELIX 11 11 PRO A 335 GLN A 357 1 23 HELIX 12 12 THR A 363 LEU A 378 1 16 HELIX 13 13 HIS A 382 ILE A 389 1 8 HELIX 14 14 PRO A 390 ARG A 393 5 4 HELIX 15 15 TYR A 394 THR A 404 1 11 HELIX 16 16 GLY A 411 VAL A 417 1 7 HELIX 17 17 GLY A 422 ALA A 433 1 12 HELIX 18 18 TYR A 437 LEU A 440 5 4 HELIX 19 19 CYS A 441 ARG A 449 1 9 HELIX 20 20 ALA A 457 TYR A 482 1 26 HELIX 21 21 ARG A 484 ASP A 491 1 8 HELIX 22 22 ASP A 491 GLU A 503 1 13 HELIX 23 23 GLN A 508 GLY A 513 5 6 HELIX 24 24 SER A 520 THR A 536 1 17 HELIX 25 25 THR A 536 GLN A 544 1 9 HELIX 26 26 GLY A 545 TYR A 550 1 6 HELIX 27 27 TRP A 552 ALA A 556 5 5 HELIX 28 28 THR A 567 VAL A 571 5 5 HELIX 29 29 THR A 572 LEU A 580 1 9 HELIX 30 30 ASP A 582 LEU A 596 1 15 HELIX 31 31 GLY A 616 LEU A 644 1 29
SHEET 1 A 4 GLU A 45 ASP A 51 0 SHEET 2 A 4 ARG A 2 THR A 9 -1 N TYR A 3 O HIS A 50 SHEET 3 A 4 TRP A 75 GLN A 83 -1 O GLN A 83 N ARG A 4 SHEET 4 A 4 VAL A 91 VAL A 99 -1 O VAL A 99 N TRP A 75 SHEET 1 B 4 GLU A 31 LEU A 38 0 SHEET 2 B 4 ARG A 20 GLY A 27 -1 N LEU A 23 O LEU A 34 SHEET 3 B 4 LEU A 59 HIS A 67 -1 O ARG A 65 N GLN A 22 SHEET 4 B 4 ILE A 104 PRO A 108 -1 O LEU A 105 N LEU A 64 SHEET 1 C 2 TRP A 140 ALA A 141 0 SHEET 2 C 2 THR A 150 ILE A 151 -1 O THR A 150 N ALA A 141 SHEET 1 D 5 ARG A 241 ARG A 242 0 SHEET 2 D 5 LEU A 272 ASP A 276 -1 O GLU A 274 N ARG A 241 SHEET 3 D 5 LEU A 299 MET A 304 -1 O LEU A 302 N PHE A 273 SHEET 4 D 5 LEU A 310 GLN A 316 -1 O MET A 313 N MET A 301 SHEET 5 D 5 LEU A 329 PHE A 330 -1 O PHE A 330 N ILE A 315 SHEET 1 E 2 VAL A 287 ILE A 288 0 SHEET 2 E 2 GLU A 291 LYS A 292 -1 O GLU A 291 N ILE A 288
LINK FE FE2 A 663 NE2 HIS A 359 LINK FE FE2 A 663 NE2 HIS A 364 LINK FE FE2 A 663 NE2 HIS A 539 LINK FE FE2 A 663 OXT ILE A 662
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000