10 20 30 40 50 60 70 80 2A34 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN/PROTEIN BINDING 23-JUN-05 2A34
TITLE THEORETICAL MODEL OF HUMAN CONE ARRESTIN: THE COMPLETE TITLE 2 STRUCTURE.(RES 1-388)
CAVEAT 2A34 CHIRALITY ERROR AT THE CA CENTER OF MET A 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARRESTIN-C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CONE ARRESTIN, RETINAL CONE ARRESTIN 3, X- COMPND 5 ARRESTIN, C- ARRESTIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN
KEYWDS SIGNAL PROTEIN, GPCR
EXPDTA THEORETICAL MODEL
AUTHOR Y.LING,S.K.GREGURICK
REVDAT 1 12-JUL-05 2A34 0
JRNL AUTH Y.LING,S.K.GREGURICK JRNL TITL THEORETICAL MODEL OF THE THREE-DIMENSIONAL JRNL TITL 2 STRUCTURE OF HUMAN CONE ARRESTIN:STRUCTUAL JRNL TITL 3 ANALYSIS AND MOLECULAR DYNAMICS SIMULATIONS JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PS-SHOW 2.2, MODELLER 6.2, SPDBV 3.7, MC-SA REMARK 3 AUTHORS : A. SALI (PS-SHOW), E. SWANSON (MODELLER), N. REMARK 3 GUEX (SPDBV), S.K. GREGURICK (MC-SA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2A34 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-2005. REMARK 100 THE RCSB ID CODE IS RCSB033430.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS AN UPDATE OF 1XEH. THE CARBOXYL TAIL REMARK 220 (RES 357-388) WAS ADDED.
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CE2 PHE A 5 CD1 LEU A 163 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 1 N MET A 1 CA -0.075 REMARK 500 PHE A 5 CG PHE A 5 CD2 -0.073 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CA - C - O ANGL. DEV. =-14.8 DEGREES REMARK 500 PHE A 5 CB - CG - CD2 ANGL. DEV. =-13.9 DEGREES REMARK 500 LEU A 163 CB - CG - CD1 ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU A 163 CB - CG - CD2 ANGL. DEV. =-13.4 DEGREES REMARK 500 GLY A 333 CA - C - N ANGL. DEV. =-13.7 DEGREES REMARK 500 ASP A 334 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 ASP A 385 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 27 -58.66 74.01 REMARK 500 LYS A 45 -104.25 70.90 REMARK 500 GLU A 86 160.00 65.29 REMARK 500 TYR A 241 -48.88 69.92 REMARK 500 ASP A 334 130.61 113.96 REMARK 500 ASP A 362 -179.30 123.33 REMARK 500 GLU A 381 105.56 122.43 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 SER A 2 148.96 REMARK 500 SER A 88 SER A 89 78.90 REMARK 500 GLY A 92 ALA A 93 54.26
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XEH RELATED DB: PDB REMARK 900 THE CARBOXYL TAIL (RES 357-388) WAS ADDED TO COMPLETE THE REMARK 900 MODEL OF HUMAN CONE ARRESTIN.
DBREF 2A34 A 1 388 UNP P36575 ARRC_HUMAN 1 388
SEQRES 1 A 388 MET SER LYS VAL PHE LYS LYS THR SER SER ASN GLY LYS SEQRES 2 A 388 LEU SER ILE TYR LEU GLY LYS ARG ASP PHE VAL ASP HIS SEQRES 3 A 388 VAL ASP THR VAL GLU PRO ILE ASP GLY VAL VAL LEU VAL SEQRES 4 A 388 ASP PRO GLU TYR LEU LYS CYS ARG LYS LEU PHE VAL MET SEQRES 5 A 388 LEU THR CYS ALA PHE ARG TYR GLY ARG ASP ASP LEU GLU SEQRES 6 A 388 VAL ILE GLY LEU THR PHE ARG LYS ASP LEU TYR VAL GLN SEQRES 7 A 388 THR LEU GLN VAL VAL PRO ALA GLU SER SER SER PRO GLN SEQRES 8 A 388 GLY ALA LEU THR VAL LEU GLN GLU ARG LEU LEU HIS LYS SEQRES 9 A 388 LEU GLY ASP ASN ALA TYR PRO PHE THR LEU GLN MET VAL SEQRES 10 A 388 THR ASN LEU PRO CYS SER VAL THR LEU GLN PRO GLY PRO SEQRES 11 A 388 GLU ASP ALA GLY LYS PRO CYS GLY ILE ASP PHE GLU VAL SEQRES 12 A 388 LYS SER PHE CYS ALA GLU ASN PRO GLU GLU THR VAL SER SEQRES 13 A 388 LYS ARG ASP TYR VAL ARG LEU VAL VAL ARG LYS VAL GLN SEQRES 14 A 388 PHE ALA PRO PRO GLU ALA GLY PRO GLY PRO SER ALA GLN SEQRES 15 A 388 THR ILE ARG ARG PHE LEU LEU SER ALA GLN PRO LEU GLN SEQRES 16 A 388 LEU GLN ALA TRP MET ASP ARG GLU VAL HIS TYR HIS GLY SEQRES 17 A 388 GLU PRO ILE SER VAL ASN VAL SER ILE ASN ASN CYS THR SEQRES 18 A 388 ASN LYS VAL ILE LYS LYS ILE LYS ILE SER VAL ASP GLN SEQRES 19 A 388 ILE THR ASP VAL VAL LEU TYR SER LEU ASP LYS TYR THR SEQRES 20 A 388 LYS THR VAL PHE ILE GLN GLU PHE THR GLU THR VAL ALA SEQRES 21 A 388 ALA ASN SER SER PHE SER GLN SER PHE ALA VAL THR PRO SEQRES 22 A 388 ILE LEU ALA ALA SER CYS GLN LYS ARG GLY LEU ALA LEU SEQRES 23 A 388 ASP GLY LYS LEU LYS HIS GLU ASP THR ASN LEU ALA SER SEQRES 24 A 388 SER THR ILE ILE ARG PRO GLY MET ASP LYS GLU LEU LEU SEQRES 25 A 388 GLY ILE LEU VAL SER TYR LYS VAL ARG VAL ASN LEU MET SEQRES 26 A 388 VAL SER CYS GLY GLY ILE LEU GLY ASP LEU THR ALA SER SEQRES 27 A 388 ASP VAL GLY VAL GLU LEU PRO LEU VAL LEU ILE HIS PRO SEQRES 28 A 388 LYS PRO SER HIS GLU ALA ALA SER SER GLU ASP ILE VAL SEQRES 29 A 388 ILE GLU GLU PHE THR ARG LYS GLY GLU GLU GLU SER GLN SEQRES 30 A 388 LYS ALA VAL GLU ALA GLU GLY ASP GLU GLY SER
HELIX 1 1 ASP A 40 LYS A 45 1 6 HELIX 2 2 THR A 95 LEU A 105 1 11 HELIX 3 3 ILE A 274 SER A 278 5 5 HELIX 4 4 LYS A 309 LEU A 312 5 4
SHEET 1 A 5 ALA A 109 LEU A 114 0 SHEET 2 A 5 ILE A 33 LEU A 38 -1 N GLY A 35 O PHE A 112 SHEET 3 A 5 SER A 15 LEU A 18 -1 N SER A 15 O LEU A 38 SHEET 4 A 5 LYS A 3 THR A 8 -1 N LYS A 7 O ILE A 16 SHEET 5 A 5 VAL A 364 ILE A 365 1 O VAL A 364 N VAL A 4 SHEET 1 B 5 ASP A 22 ASP A 25 0 SHEET 2 B 5 TYR A 160 GLN A 169 1 O ARG A 166 N PHE A 23 SHEET 3 B 5 CYS A 137 ALA A 148 -1 N VAL A 143 O LEU A 163 SHEET 4 B 5 LYS A 48 TYR A 59 -1 N ARG A 58 O GLY A 138 SHEET 5 B 5 PHE A 71 VAL A 83 -1 O LEU A 75 N CYS A 55 SHEET 1 C 5 ASP A 22 ASP A 25 0 SHEET 2 C 5 TYR A 160 GLN A 169 1 O ARG A 166 N PHE A 23 SHEET 3 C 5 CYS A 137 ALA A 148 -1 N VAL A 143 O LEU A 163 SHEET 4 C 5 VAL A 124 GLN A 127 -1 N LEU A 126 O CYS A 137 SHEET 5 C 5 LEU A 284 LEU A 286 -1 O LEU A 286 N THR A 125 SHEET 1 D 4 GLN A 182 ARG A 186 0 SHEET 2 D 4 LEU A 194 MET A 200 -1 O LEU A 194 N ARG A 186 SHEET 3 D 4 ILE A 211 ASN A 219 -1 O SER A 216 N GLN A 197 SHEET 4 D 4 SER A 263 VAL A 271 -1 O VAL A 271 N ILE A 211 SHEET 1 E 5 VAL A 204 TYR A 206 0 SHEET 2 E 5 ASP A 339 ILE A 349 1 O ILE A 349 N HIS A 205 SHEET 3 E 5 ILE A 314 VAL A 326 -1 N LEU A 324 O VAL A 340 SHEET 4 E 5 ILE A 225 VAL A 238 -1 N SER A 231 O ARG A 321 SHEET 5 E 5 ASP A 244 PHE A 255 -1 O ASP A 244 N VAL A 238
CISPEP 1 VAL A 83 PRO A 84 0 -10.07
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000