10 20 30 40 50 60 70 80 2A2Y - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA,RNA BINDING PROTEIN 23-JUN-05 2A2Y
TITLE NMR STRUCTUE OF SSO10B2 FROM SULFOLOBUS SOLFATARICUS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA/RNA-BINDING PROTEIN ALBA 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: ALBA2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTABLUE(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETBLUE-2
KEYWDS HYPERTHERMOPHILE PROTEIN, DIMER, DNA,RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 11
AUTHOR K.BIYANI,M.A.KAHSAI,A.T.CLARK,T.L.ARMSTRONG,S.P.EDMONDSON, AUTHOR 2 J.W.SHRIVER
REVDAT 2 24-FEB-09 2A2Y 1 VERSN REVDAT 1 08-NOV-05 2A2Y 0
JRNL AUTH K.BIYANI,M.A.KAHSAI,A.T.CLARK,T.L.ARMSTRONG, JRNL AUTH 2 S.P.EDMONDSON,J.W.SHRIVER JRNL TITL SOLUTION STRUCTURE, STABILITY, AND NUCLEIC ACID JRNL TITL 2 BINDING OF THE HYPERTHERMOPHILE PROTEIN SSO10B2. JRNL REF BIOCHEMISTRY V. 44 14217 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16245938 JRNL DOI 10.1021/BI051266R
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.7 REMARK 3 AUTHORS : G.M. CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE ASSIGNMENTS, DISTANCE RESTRAINT REMARK 3 CALIBRATIONS, AND INITIAL STRUCTURES WERE MADE USING ARIA 1.2. REMARK 3 FINAL STRUCTURE REFINEMENT WAS DONE USING XPLOR-NIH WITH THE REMARK 3 NOE DERIVED DISTANCE RESTRAINTS, 126 PHI/PSI DIHEDRAL ANGLES, REMARK 3 48 HNHA COUPLING CONSTANTS, 33 HYDROGEN BONDS, 80 DIPOLAR REMARK 3 COUPLINGS, 57 T1/T2 RELAXATION RATIOS, AND NON- REMARK 3 CRYSTALLOGRAPHIC DIMER SYMMETRY RESTRAINTS (NUMBERS ARE PER REMARK 3 MONOMER). ANISOTROPY TENSORS WERE REFINED SIMULTANEOUSLY WITH REMARK 3 THE STRUCTURE.
REMARK 4 REMARK 4 2A2Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033424.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM SSO10B2, U-15N, U-13C, REMARK 210 PH 4.8, 90% H2O, 10% D2O; 1 MM REMARK 210 SSO10B2, U-15N, U-13C, PH 4.8, REMARK 210 99.996% D2O; 1 MM SSO10B2, U- REMARK 210 15N, PH 4.8, 90% H2O, 10% D2O; REMARK 210 HETERO-LABELED DIMER REMARK 210 CONSISTING OF 0.5 MM SSO10B2 U REMARK 210 -15N, U-13C, 0.5 MM SSO10B2 REMARK 210 UNLABLED PH 5.0, 99.996% D2O; REMARK 210 1 MM SSO10B2, U-15N, PH 4.8, REMARK 210 90% H2O, 10% D2O WITH REMARK 210 ALIGNMENT MEDIA CONSISTING OF REMARK 210 5% C12E5/HEXANOL (R=.87) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, HNHA, T1_ REMARK 210 T1RHO_HSQC, 2D_1H-15N_NOE, 12C REMARK 210 -FILTERED_C13-EDITED_NOESY, REMARK 210 IPAP_HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2004, REMARK 210 NMRVIEW 5.2.2, ARIA 1.2, REMARK 210 TENSOR2 2 REMARK 210 METHOD USED : SIMULATED ANNEALING USING REMARK 210 CARTESIAN AND TORSION ANGLE REMARK 210 DYNAMICS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : 10 STRUCTURES WITH THE LOWEST REMARK 210 TOTAL ENERGY INCLUDING REMARK 210 RESTRAINT TERMS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MODEL 1 IS AN ENERGY MINIMIZED AVERAGE STRUCTURE. REMARK 210 MODELS 2 THROUGH 11 ARE THE 10 BEST ENSEMBLE STRUCTURES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 59.14 -146.59 REMARK 500 1 LEU A 5 52.55 -172.51 REMARK 500 1 ASN A 15 -179.44 -69.00 REMARK 500 1 ASP A 55 -6.96 -57.63 REMARK 500 1 LEU A 57 -29.03 -152.42 REMARK 500 1 ASP A 74 40.20 85.69 REMARK 500 1 LYS B 4 59.25 -150.84 REMARK 500 1 LEU B 5 49.60 -172.56 REMARK 500 1 LYS B 14 -113.94 -83.80 REMARK 500 1 ASP B 55 -7.78 -56.26 REMARK 500 1 LEU B 57 -35.27 -157.14 REMARK 500 1 ASP B 74 41.84 82.20 REMARK 500 2 GLU A 3 -49.29 -165.69 REMARK 500 2 LYS A 4 53.86 -156.53 REMARK 500 2 LEU A 5 49.99 -172.10 REMARK 500 2 LYS A 14 -130.41 -90.44 REMARK 500 2 ALA A 46 -38.18 -29.22 REMARK 500 2 VAL A 47 -74.88 -73.64 REMARK 500 2 ASP A 55 -7.90 -56.53 REMARK 500 2 LEU A 57 -24.37 -153.73 REMARK 500 2 ASP A 74 39.75 77.73 REMARK 500 2 GLU B 3 -50.11 -165.82 REMARK 500 2 LYS B 4 58.43 -160.21 REMARK 500 2 LEU B 5 46.85 -175.91 REMARK 500 2 LYS B 14 -115.91 -92.97 REMARK 500 2 LYS B 45 -71.33 -63.32 REMARK 500 2 ALA B 46 -43.29 -24.53 REMARK 500 2 LEU B 57 -23.59 -154.61 REMARK 500 2 ASP B 74 39.13 78.21 REMARK 500 3 GLU A 3 -53.83 -164.53 REMARK 500 3 LYS A 4 57.67 -158.63 REMARK 500 3 LEU A 5 46.25 -176.21 REMARK 500 3 LEU A 57 -3.95 -161.83 REMARK 500 3 ASP A 74 36.50 87.19 REMARK 500 3 GLU B 3 -51.11 -166.17 REMARK 500 3 LYS B 4 58.45 -161.64 REMARK 500 3 LEU B 5 47.82 -173.93 REMARK 500 3 LYS B 14 -131.00 -99.34 REMARK 500 3 ASP B 55 -11.84 -49.98 REMARK 500 3 LEU B 57 -3.78 -159.83 REMARK 500 3 ASP B 74 35.44 86.91 REMARK 500 4 THR A 2 -72.11 -96.37 REMARK 500 4 GLU A 3 -32.93 74.02 REMARK 500 4 LYS A 4 53.42 -155.88 REMARK 500 4 ASN A 6 94.51 177.45 REMARK 500 4 LYS A 45 -70.43 -66.17 REMARK 500 4 ALA A 46 -51.34 -29.46 REMARK 500 4 ASP A 55 -9.21 -56.05 REMARK 500 4 LEU A 57 -15.45 -153.86 REMARK 500 4 ASN A 65 148.61 -172.59 REMARK 500 4 ASP A 74 36.63 85.96 REMARK 500 4 LYS B 4 60.59 -152.18 REMARK 500 4 ASN B 6 91.54 -178.35 REMARK 500 4 LYS B 14 -118.79 -97.81 REMARK 500 4 ALA B 46 -50.41 -29.71 REMARK 500 4 LEU B 57 -18.21 -153.95 REMARK 500 4 ASP B 74 36.81 85.07 REMARK 500 5 THR A 2 17.80 -144.64 REMARK 500 5 GLU A 3 -48.34 67.74 REMARK 500 5 LYS A 4 55.37 -157.85 REMARK 500 5 LEU A 5 49.70 -173.17 REMARK 500 5 LYS A 14 -132.76 -95.15 REMARK 500 5 LYS A 45 -70.70 -62.29 REMARK 500 5 ASP A 55 -16.11 -48.49 REMARK 500 5 LEU A 57 0.58 -159.16 REMARK 500 5 ASP A 74 37.25 80.64 REMARK 500 5 THR B 2 13.52 -144.05 REMARK 500 5 GLU B 3 -50.73 72.28 REMARK 500 5 LYS B 4 57.40 -157.50 REMARK 500 5 LEU B 5 46.60 -175.38 REMARK 500 5 LYS B 14 -118.25 -94.95 REMARK 500 5 LEU B 57 -1.92 -156.53 REMARK 500 5 ASN B 65 146.42 -175.57 REMARK 500 5 ASP B 74 34.51 82.22 REMARK 500 6 THR A 2 -162.11 -168.09 REMARK 500 6 LYS A 4 63.81 -109.72 REMARK 500 6 ASN A 6 96.13 175.84 REMARK 500 6 LYS A 14 -123.55 -91.71 REMARK 500 6 ASP A 55 -7.18 -57.92 REMARK 500 6 LEU A 57 -19.47 -154.44 REMARK 500 6 ASP A 74 36.22 84.08 REMARK 500 6 THR B 2 -167.92 -160.21 REMARK 500 6 LYS B 4 50.29 -160.02 REMARK 500 6 ASN B 6 92.96 -178.94 REMARK 500 6 THR B 13 -70.27 -76.86 REMARK 500 6 ASP B 55 -17.96 -42.41 REMARK 500 6 LEU B 57 -13.13 -155.39 REMARK 500 6 ASP B 74 35.53 79.74 REMARK 500 7 LYS A 4 53.84 -159.39 REMARK 500 7 LEU A 5 46.92 -173.24 REMARK 500 7 LYS A 14 -121.35 -100.30 REMARK 500 7 ASP A 55 -5.86 -58.49 REMARK 500 7 LEU A 57 -27.08 -152.14 REMARK 500 7 ASP A 74 33.56 88.50 REMARK 500 7 GLU B 3 -72.51 -70.58 REMARK 500 7 ASN B 6 93.83 179.06 REMARK 500 7 LYS B 14 -127.78 -96.18 REMARK 500 7 LEU B 57 -24.70 -153.53 REMARK 500 7 ASP B 74 39.65 82.59 REMARK 500 8 LEU A 5 49.80 89.32 REMARK 500 8 LYS A 45 -71.67 -62.08 REMARK 500 8 VAL A 47 -70.06 -57.02 REMARK 500 8 LEU A 57 -7.44 -155.35 REMARK 500 8 ASP A 74 35.07 87.91 REMARK 500 8 THR B 2 -149.76 42.92 REMARK 500 8 GLU B 3 -41.71 -164.14 REMARK 500 8 LEU B 5 54.80 -178.41 REMARK 500 8 LYS B 14 -129.74 -92.56 REMARK 500 8 ASP B 55 -17.47 -44.67 REMARK 500 8 LEU B 57 -12.46 -156.70 REMARK 500 8 ASN B 65 143.66 -171.23 REMARK 500 8 ASP B 74 36.31 88.34 REMARK 500 9 ASN A 6 93.68 -179.40 REMARK 500 9 LYS A 45 -71.02 -64.32 REMARK 500 9 VAL A 47 -71.68 -57.94 REMARK 500 9 ASP A 55 -8.64 -54.43 REMARK 500 9 LEU A 57 -13.29 -153.14 REMARK 500 9 ASP A 74 36.04 86.38 REMARK 500 9 LYS B 4 58.31 -155.95 REMARK 500 9 ASN B 6 93.12 -179.95 REMARK 500 9 LYS B 14 -120.65 -98.57 REMARK 500 9 LYS B 45 -70.54 -63.75 REMARK 500 9 LEU B 57 -20.71 -152.10 REMARK 500 9 ASP B 74 39.62 83.02 REMARK 500 10 GLU A 3 -39.04 -165.81 REMARK 500 10 LYS A 4 54.37 -156.09 REMARK 500 10 LEU A 5 50.89 -174.74 REMARK 500 10 LYS A 45 -72.39 -62.35 REMARK 500 10 ASP A 55 -5.98 -59.34 REMARK 500 10 LEU A 57 -21.86 -151.64 REMARK 500 10 ASP A 74 36.07 86.41 REMARK 500 10 GLU B 3 -84.90 -157.77 REMARK 500 10 LYS B 4 58.10 -109.00 REMARK 500 10 ASN B 6 91.24 179.12 REMARK 500 10 LYS B 45 -71.86 -68.07 REMARK 500 10 LEU B 57 -21.05 -153.32 REMARK 500 10 ASP B 74 41.46 79.82 REMARK 500 11 LYS A 4 55.61 -160.62 REMARK 500 11 LEU A 5 46.33 -174.01 REMARK 500 11 ALA A 46 -38.10 -34.22 REMARK 500 11 VAL A 47 -73.02 -74.01 REMARK 500 11 ASP A 55 -6.53 -57.66 REMARK 500 11 LEU A 57 -16.71 -152.19 REMARK 500 11 ASP A 74 34.58 88.87 REMARK 500 11 THR B 2 34.78 -95.69 REMARK 500 11 GLU B 3 -73.63 -70.99 REMARK 500 11 ASN B 6 93.46 179.76 REMARK 500 11 LYS B 14 -132.92 -97.60 REMARK 500 11 LYS B 45 -70.84 -65.04 REMARK 500 11 LEU B 57 -15.24 -155.11 REMARK 500 11 ASP B 74 34.86 86.13 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2A2Y A 1 89 UNP Q97ZF4 ALBA2_SULSO 1 89 DBREF 2A2Y B 1 89 UNP Q97ZF4 ALBA2_SULSO 1 89
SEQRES 1 A 89 MET THR GLU LYS LEU ASN GLU ILE VAL VAL ARG LYS THR SEQRES 2 A 89 LYS ASN VAL GLU ASP HIS VAL LEU ASP VAL ILE VAL LEU SEQRES 3 A 89 PHE ASN GLN GLY ILE ASP GLU VAL ILE LEU LYS GLY THR SEQRES 4 A 89 GLY ARG GLU ILE SER LYS ALA VAL ASP VAL TYR ASN SER SEQRES 5 A 89 LEU LYS ASP ARG LEU GLY ASP GLY VAL GLN LEU VAL ASN SEQRES 6 A 89 VAL GLN THR GLY SER GLU VAL ARG ASP ARG ARG ARG ILE SEQRES 7 A 89 SER TYR ILE LEU LEU ARG LEU LYS ARG VAL TYR SEQRES 1 B 89 MET THR GLU LYS LEU ASN GLU ILE VAL VAL ARG LYS THR SEQRES 2 B 89 LYS ASN VAL GLU ASP HIS VAL LEU ASP VAL ILE VAL LEU SEQRES 3 B 89 PHE ASN GLN GLY ILE ASP GLU VAL ILE LEU LYS GLY THR SEQRES 4 B 89 GLY ARG GLU ILE SER LYS ALA VAL ASP VAL TYR ASN SER SEQRES 5 B 89 LEU LYS ASP ARG LEU GLY ASP GLY VAL GLN LEU VAL ASN SEQRES 6 B 89 VAL GLN THR GLY SER GLU VAL ARG ASP ARG ARG ARG ILE SEQRES 7 B 89 SER TYR ILE LEU LEU ARG LEU LYS ARG VAL TYR
HELIX 1 1 ASN A 15 PHE A 27 1 13 HELIX 2 2 ARG A 41 GLY A 58 1 18 HELIX 3 3 ASN B 15 GLN B 29 1 15 HELIX 4 4 ARG B 41 ASP B 55 1 15
SHEET 1 A 4 ASN A 6 VAL A 9 0 SHEET 2 A 4 VAL A 34 THR A 39 1 O ILE A 35 N ILE A 8 SHEET 3 A 4 ARG A 77 LEU A 85 -1 O LEU A 83 N LEU A 36 SHEET 4 A 4 VAL A 66 VAL A 72 -1 N GLN A 67 O LEU A 82 SHEET 1 B 4 ASN B 6 VAL B 9 0 SHEET 2 B 4 VAL B 34 THR B 39 1 O ILE B 35 N ILE B 8 SHEET 3 B 4 ARG B 77 LEU B 85 -1 O LEU B 83 N LEU B 36 SHEET 4 B 4 VAL B 66 VAL B 72 -1 N GLN B 67 O LEU B 82
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000