10 20 30 40 50 60 70 80 2A2V - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TOXIN 23-JUN-05 2A2V
TITLE THE SOLUTION STRUCTURE OF JINGZHAOTOXIN-XI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: JINGZHAOTOXIN-XI; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHILOBRACHYS JINGZHAO; SOURCE 3 ORGANISM_TAXID: 278060; SOURCE 4 SECRETION: VENOM
KEYWDS ICK MOTIF, NEUROTOXIN SPIDER
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Z.LIAO,S.P.LIANG
REVDAT 2 24-FEB-09 2A2V 1 VERSN REVDAT 1 05-JUL-05 2A2V 0
JRNL AUTH Z.LIAO,S.P.LIANG JRNL TITL THE SOLUTION STRUCTURE OF JINGZHAOTOXIN-XI JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH2.9.6 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2A2V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB033421.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5MM JINGZHAOTOXIN-XI 1H, 20MM REMARK 210 PHOSPHATE BUFFER NA, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 -167.13 -128.29 REMARK 500 1 SER A 10 -48.14 -133.26 REMARK 500 1 SER A 13 48.75 -86.58 REMARK 500 1 LEU A 25 -150.08 -100.18 REMARK 500 1 LYS A 26 52.32 -152.75 REMARK 500 1 THR A 33 -83.49 -93.78 REMARK 500 2 SER A 10 -48.98 -150.45 REMARK 500 2 SER A 13 58.02 -90.80 REMARK 500 2 CYS A 16 -168.06 -77.02 REMARK 500 2 LEU A 25 -128.92 -108.67 REMARK 500 2 LYS A 26 53.96 -161.24 REMARK 500 3 SER A 10 -56.87 -134.15 REMARK 500 3 SER A 13 51.50 -90.57 REMARK 500 3 LEU A 25 -126.71 -107.13 REMARK 500 3 LYS A 26 52.58 -165.72 REMARK 500 4 SER A 10 -48.26 -134.99 REMARK 500 4 SER A 13 43.06 -90.58 REMARK 500 4 HIS A 18 -22.69 175.98 REMARK 500 4 LEU A 25 -152.97 -97.21 REMARK 500 4 LYS A 26 50.15 -150.30 REMARK 500 5 LYS A 4 -160.87 -107.87 REMARK 500 5 SER A 10 -44.60 -134.41 REMARK 500 5 ASP A 14 17.29 -146.88 REMARK 500 5 LEU A 25 -142.88 -89.79 REMARK 500 5 LYS A 26 54.65 -154.44 REMARK 500 6 ASP A 14 20.10 -148.15 REMARK 500 7 LYS A 4 -167.34 -108.28 REMARK 500 7 SER A 10 -47.36 -146.23 REMARK 500 7 SER A 13 55.55 -90.22 REMARK 500 7 ASP A 31 49.09 -148.39 REMARK 500 8 SER A 10 -53.01 -135.70 REMARK 500 8 SER A 13 51.85 -90.84 REMARK 500 8 LEU A 25 -156.73 -103.40 REMARK 500 8 LYS A 26 49.95 -145.40 REMARK 500 9 LYS A 4 -166.96 -112.56 REMARK 500 9 SER A 10 -52.39 -128.63 REMARK 500 9 LEU A 25 -122.52 -107.96 REMARK 500 9 LYS A 26 60.01 -165.30 REMARK 500 9 ASP A 31 48.72 -148.20 REMARK 500 10 LYS A 4 -169.26 -100.64 REMARK 500 10 SER A 10 -51.15 -122.80 REMARK 500 10 SER A 13 37.41 -89.64 REMARK 500 10 CYS A 16 -167.61 -78.38 REMARK 500 10 LEU A 25 -121.28 -102.64 REMARK 500 10 LYS A 26 60.57 -169.18 REMARK 500 11 LYS A 4 -167.49 -104.97 REMARK 500 11 SER A 10 -49.22 -133.30 REMARK 500 11 ASP A 14 23.50 -140.33 REMARK 500 11 LEU A 25 -143.82 -92.88 REMARK 500 11 LYS A 26 52.49 -158.12 REMARK 500 12 LYS A 4 -168.89 -113.36 REMARK 500 12 SER A 13 49.63 -90.01 REMARK 500 12 LEU A 25 -121.79 -100.88 REMARK 500 12 LYS A 26 57.45 -166.26 REMARK 500 13 LYS A 4 -168.46 -105.18 REMARK 500 13 SER A 10 -51.96 -131.97 REMARK 500 13 SER A 13 42.92 -90.36 REMARK 500 13 LEU A 25 -143.49 -99.92 REMARK 500 13 LYS A 26 52.22 -156.48 REMARK 500 13 THR A 33 -86.21 -108.62 REMARK 500 14 SER A 10 -54.39 -124.97 REMARK 500 14 THR A 24 -62.56 -100.77 REMARK 500 15 LYS A 4 -164.96 -122.93 REMARK 500 15 SER A 10 -56.95 -129.25 REMARK 500 15 CYS A 16 -172.27 -69.09 REMARK 500 16 SER A 10 -50.63 -134.80 REMARK 500 16 LEU A 25 -151.84 -89.18 REMARK 500 16 LYS A 26 52.43 -149.85 REMARK 500 16 ASP A 31 62.91 -102.24 REMARK 500 17 SER A 10 -50.47 -130.50 REMARK 500 17 SER A 13 50.64 -90.37 REMARK 500 17 CYS A 16 -166.82 -79.20 REMARK 500 17 LEU A 25 -42.00 75.43 REMARK 500 18 SER A 10 -58.10 -129.11 REMARK 500 18 SER A 13 51.83 -90.23 REMARK 500 18 ASP A 31 64.19 -116.43 REMARK 500 18 THR A 33 -52.22 -144.01 REMARK 500 19 LYS A 4 -165.54 -102.92 REMARK 500 19 SER A 10 -54.82 -133.03 REMARK 500 19 ASP A 31 59.55 -109.14 REMARK 500 20 LYS A 4 -168.51 -112.80 REMARK 500 20 SER A 10 -48.35 -141.07 REMARK 500 20 SER A 13 46.83 -90.70 REMARK 500 20 LEU A 25 -158.21 -92.06 REMARK 500 20 LYS A 26 50.69 -146.51 REMARK 500 20 ASP A 31 71.76 -154.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 3 0.26 SIDE_CHAIN REMARK 500 2 ARG A 3 0.27 SIDE_CHAIN REMARK 500 3 ARG A 3 0.30 SIDE_CHAIN REMARK 500 4 ARG A 3 0.28 SIDE_CHAIN REMARK 500 5 ARG A 3 0.32 SIDE_CHAIN REMARK 500 6 ARG A 3 0.29 SIDE_CHAIN REMARK 500 7 ARG A 3 0.31 SIDE_CHAIN REMARK 500 8 ARG A 3 0.28 SIDE_CHAIN REMARK 500 9 ARG A 3 0.31 SIDE_CHAIN REMARK 500 10 ARG A 3 0.29 SIDE_CHAIN REMARK 500 11 ARG A 3 0.30 SIDE_CHAIN REMARK 500 12 ARG A 3 0.31 SIDE_CHAIN REMARK 500 13 ARG A 3 0.30 SIDE_CHAIN REMARK 500 14 ARG A 3 0.30 SIDE_CHAIN REMARK 500 15 ARG A 3 0.31 SIDE_CHAIN REMARK 500 16 ARG A 3 0.31 SIDE_CHAIN REMARK 500 17 ARG A 3 0.32 SIDE_CHAIN REMARK 500 18 ARG A 3 0.31 SIDE_CHAIN REMARK 500 19 ARG A 3 0.32 SIDE_CHAIN REMARK 500 20 ARG A 3 0.30 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 2A2V A 1 34 UNP P0C247 JZT11_CHIJI 51 84
SEQRES 1 A 34 GLU CYS ARG LYS MET PHE GLY GLY CYS SER VAL ASP SER SEQRES 2 A 34 ASP CYS CYS ALA HIS LEU GLY CYS LYS PRO THR LEU LYS SEQRES 3 A 34 TYR CYS ALA TRP ASP GLY THR PHE
HELIX 1 1 VAL A 11 CYS A 15 5 5
SHEET 1 A 2 LEU A 19 CYS A 21 0 SHEET 2 A 2 CYS A 28 TRP A 30 -1 O ALA A 29 N GLY A 20
SSBOND 1 CYS A 2 CYS A 16 1555 1555 2.02 SSBOND 2 CYS A 9 CYS A 21 1555 1555 2.02 SSBOND 3 CYS A 15 CYS A 28 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000