10 20 30 40 50 60 70 80 1ZUB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ENDOCYTOSIS/EXOCYTOSIS 30-MAY-05 1ZUB
TITLE SOLUTION STRUCTURE OF THE RIM1ALPHA PDZ DOMAIN IN COMPLEX TITLE 2 WITH AN ELKS1B C-TERMINAL PEPTIDE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PDZ DOMAIN; COMPND 6 SYNONYM: RAB3-INTERACTING MOLECULE 1, RIM 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ELKS1B; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: ERC PROTEIN 1, ERC1, CAZ-ASSOCIATED STRUCTURAL COMPND 12 PROTEIN 2, CAST2, RAB6 INTERACTING PROTEIN 2, C-TERMINAL COMPND 13 PEPTIDE; COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RIMS1, RIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODON+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KT; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: NORWAY RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: RAB6IP2, CAST2, ELKS, ERC1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PTMHA
KEYWDS PDZ DOMAIN, PEPTIDE, COMPLEX, ENDOCYTOSIS/EXOCYTOSIS COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.LU,H.LI,Y.WANG,T.C.SUDHOF,J.RIZO
REVDAT 3 24-FEB-09 1ZUB 1 VERSN REVDAT 2 13-SEP-05 1ZUB 1 JRNL REVDAT 1 30-AUG-05 1ZUB 0
JRNL AUTH J.LU,H.LI,Y.WANG,T.C.SUDHOF,J.RIZO JRNL TITL SOLUTION STRUCTURE OF THE RIM1ALPHA PDZ DOMAIN IN JRNL TITL 2 COMPLEX WITH AN ELKS1B C-TERMINAL PEPTIDE JRNL REF J.MOL.BIOL. V. 352 455 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16095618 JRNL DOI 10.1016/J.JMB.2005.07.047
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZUB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB033127.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM RIM1ALPHA PDZ DOMAIN U- REMARK 210 15N, 0.75MM ELKS1B C-TERMINAL REMARK 210 PEPTIDE, 20MM MES BUFFER, 90% REMARK 210 H2O, 10% D2O; 0.5MM RIM1ALPHA REMARK 210 PDZ DOMAIN U-15N, 13C, 0.75MM REMARK 210 ELKS1B C-TERMINAL PEPTIDE, REMARK 210 20MM MES BUFFER, 90% H2O, 10% REMARK 210 D2O; 0.5MM RIM1ALPHA PDZ REMARK 210 DOMAIN U-15N,10%-13C, 0.75MM REMARK 210 ELKS1B C-TERMINAL PEPTIDE, REMARK 210 20MM MES BUFFER, 90% H2O, 10% REMARK 210 D2O; 0.5MM ELKS1B C-TERMINAL REMARK 210 PEPTIDE U-15N, 0.75MM REMARK 210 RIM1ALPHA PDZ DOMAIN, 20MM MES REMARK 210 BUFFER, 90% H2O, 10% D2O; REMARK 210 0.5MM ELKS1B C-TERMINAL REMARK 210 PEPTIDE U-15N, 13C, 0.75MM REMARK 210 RIM1ALPHA PDZ DOMAIN, 20MM MES REMARK 210 BUFFER, 90% H2O, 10% D2O; REMARK 210 0.5MM ELKS1B C-TERMINAL REMARK 210 PEPTIDE U-15N, 10%-13C, 0.75MM REMARK 210 RIM1ALPHA PDZ DOMAIN, 20MM MES REMARK 210 BUFFER, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 592 REMARK 465 SER A 593 REMARK 465 PRO A 594 REMARK 465 GLY A 595 REMARK 465 SER A 596 REMARK 465 CYS B 938 REMARK 465 ASP B 939 REMARK 465 GLN B 940 REMARK 465 ASP B 941 REMARK 465 GLU B 942
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 604 -175.48 -64.87 REMARK 500 1 THR A 621 31.87 -163.54 REMARK 500 1 GLU A 625 -92.90 -174.16 REMARK 500 1 ALA A 628 -56.61 -169.12 REMARK 500 1 LEU A 629 -89.77 -119.05 REMARK 500 1 LYS A 654 108.21 -54.89 REMARK 500 2 GLU A 625 -80.66 177.76 REMARK 500 2 ALA A 628 -80.50 -97.10 REMARK 500 2 LEU A 629 -95.11 -117.88 REMARK 500 2 LYS A 654 103.94 -57.70 REMARK 500 2 HIS A 663 61.77 72.87 REMARK 500 2 PRO A 679 114.62 -39.45 REMARK 500 3 THR A 620 19.09 57.61 REMARK 500 3 THR A 621 65.26 -157.89 REMARK 500 3 GLU A 625 -82.06 -145.17 REMARK 500 3 SER A 626 -45.43 178.17 REMARK 500 3 LEU A 629 -91.32 -126.55 REMARK 500 3 MET A 639 104.53 -58.54 REMARK 500 3 LYS A 654 103.72 -59.74 REMARK 500 3 HIS A 663 66.89 68.21 REMARK 500 3 GLU B 944 -177.19 -59.83 REMARK 500 4 GLU A 625 -39.94 178.72 REMARK 500 4 ALA A 628 -84.06 -63.40 REMARK 500 4 LEU A 629 -89.58 -117.84 REMARK 500 4 LEU A 630 -59.85 -125.24 REMARK 500 4 LYS A 654 102.83 -57.79 REMARK 500 4 HIS A 663 62.12 71.04 REMARK 500 5 SER A 604 -175.42 -65.38 REMARK 500 5 THR A 621 -169.55 56.86 REMARK 500 5 GLU A 625 151.02 178.03 REMARK 500 5 ALA A 628 -71.55 -174.29 REMARK 500 5 LEU A 629 -85.40 -120.35 REMARK 500 5 LEU A 630 -57.59 -120.60 REMARK 500 5 LYS A 651 148.68 -170.57 REMARK 500 5 LYS A 654 101.99 -56.18 REMARK 500 5 HIS A 663 57.61 70.77 REMARK 500 6 GLU A 606 17.58 -69.75 REMARK 500 6 ASP A 608 74.79 65.67 REMARK 500 6 GLU A 625 -81.47 -143.28 REMARK 500 6 SER A 626 -43.33 -161.77 REMARK 500 6 ALA A 628 -60.99 -154.59 REMARK 500 6 LEU A 629 -91.90 -116.59 REMARK 500 6 LYS A 654 101.00 -57.52 REMARK 500 6 HIS A 663 65.00 70.30 REMARK 500 7 SER A 604 -177.14 -61.01 REMARK 500 7 THR A 621 156.16 57.41 REMARK 500 7 GLU A 625 -79.14 -89.85 REMARK 500 7 SER A 626 -68.35 -163.23 REMARK 500 7 ALA A 628 -86.51 -69.45 REMARK 500 7 LEU A 629 -77.46 -122.83 REMARK 500 7 LEU A 630 -52.42 -134.33 REMARK 500 7 MET A 639 104.53 -58.55 REMARK 500 7 LYS A 651 146.26 -170.52 REMARK 500 7 LYS A 654 97.64 -54.54 REMARK 500 7 HIS A 663 52.65 72.80 REMARK 500 7 PRO A 679 112.91 -39.90 REMARK 500 8 GLU A 606 17.92 -67.08 REMARK 500 8 ASP A 608 64.32 76.80 REMARK 500 8 GLU A 625 -81.83 -159.68 REMARK 500 8 SER A 626 -176.96 -172.83 REMARK 500 8 LEU A 629 -84.61 -118.94 REMARK 500 8 LEU A 630 -59.24 -125.97 REMARK 500 8 LYS A 654 104.89 -58.46 REMARK 500 8 HIS A 663 63.71 65.81 REMARK 500 9 ASP A 608 30.04 -175.86 REMARK 500 9 GLU A 625 -82.53 -164.89 REMARK 500 9 SER A 626 -43.86 178.62 REMARK 500 9 ALA A 628 -52.35 -128.46 REMARK 500 9 LEU A 629 -80.72 -125.70 REMARK 500 9 LYS A 654 103.73 -54.93 REMARK 500 9 HIS A 663 68.80 65.07 REMARK 500 10 SER A 626 -77.57 -95.67 REMARK 500 10 ALA A 628 -60.58 -98.82 REMARK 500 10 LEU A 629 -80.97 -127.90 REMARK 500 10 LEU A 630 -43.66 -132.15 REMARK 500 10 LYS A 654 105.40 -59.69 REMARK 500 10 HIS A 663 70.51 63.46 REMARK 500 10 PRO A 679 109.44 -42.50 REMARK 500 10 GLU B 944 166.17 61.22 REMARK 500 11 SER A 604 -176.34 -60.69 REMARK 500 11 GLU A 625 66.38 61.80 REMARK 500 11 ALA A 628 -39.25 -171.61 REMARK 500 11 LEU A 629 -89.64 -121.23 REMARK 500 11 LYS A 654 98.88 -59.01 REMARK 500 11 HIS A 663 55.89 73.56 REMARK 500 12 SER A 604 -179.61 -65.80 REMARK 500 12 THR A 621 161.93 61.66 REMARK 500 12 GLU A 625 -61.20 179.58 REMARK 500 12 SER A 626 -35.90 -175.37 REMARK 500 12 ALA A 628 -67.25 -168.79 REMARK 500 12 LEU A 629 -82.40 -118.30 REMARK 500 12 LEU A 630 -49.72 -131.53 REMARK 500 12 MET A 639 106.65 -58.43 REMARK 500 12 LYS A 654 101.68 -56.74 REMARK 500 12 HIS A 663 67.57 66.14 REMARK 500 13 ASP A 608 72.72 69.55 REMARK 500 13 THR A 621 -7.45 74.75 REMARK 500 13 GLU A 625 100.97 73.90 REMARK 500 13 ALA A 628 -103.61 -136.91 REMARK 500 13 LEU A 629 -146.84 -126.79 REMARK 500 13 LEU A 630 -71.90 -61.70 REMARK 500 13 MET A 639 107.16 -59.03 REMARK 500 13 SER A 656 -178.19 -69.79 REMARK 500 14 GLU A 625 -176.96 71.06 REMARK 500 14 SER A 626 -64.46 69.69 REMARK 500 14 ALA A 628 -92.29 -55.69 REMARK 500 14 LEU A 629 -78.28 -130.44 REMARK 500 14 LEU A 630 -46.64 -133.09 REMARK 500 14 HIS A 663 65.39 65.69 REMARK 500 14 PRO A 679 109.51 -40.34 REMARK 500 15 GLU A 625 126.10 62.34 REMARK 500 15 SER A 626 -46.05 -144.84 REMARK 500 15 ALA A 628 -97.96 -155.90 REMARK 500 15 LEU A 629 -132.86 -117.81 REMARK 500 15 LEU A 630 -72.24 -91.57 REMARK 500 15 LYS A 654 104.24 -57.42 REMARK 500 16 SER A 604 -175.66 -60.79 REMARK 500 16 THR A 621 170.99 69.44 REMARK 500 16 GLU A 625 -37.42 -173.01 REMARK 500 16 SER A 626 163.74 75.44 REMARK 500 16 ALA A 628 -105.53 -84.18 REMARK 500 16 LEU A 629 -83.46 -137.14 REMARK 500 16 LYS A 654 106.35 -58.43 REMARK 500 16 HIS A 663 55.97 70.58 REMARK 500 17 SER A 604 -175.88 -60.83 REMARK 500 17 THR A 621 177.32 -56.92 REMARK 500 17 GLU A 625 -154.20 178.02 REMARK 500 17 LEU A 629 -87.14 -119.64 REMARK 500 17 LEU A 630 -41.93 -131.79 REMARK 500 17 LYS A 654 102.56 -59.03 REMARK 500 17 HIS A 663 60.82 71.89 REMARK 500 17 PRO A 679 109.31 -41.36 REMARK 500 17 GLU B 944 177.49 60.72 REMARK 500 18 GLU A 625 -171.52 175.75 REMARK 500 18 ALA A 628 -75.94 -139.70 REMARK 500 18 LEU A 629 -127.68 -119.17 REMARK 500 18 MET A 639 109.01 -58.47 REMARK 500 18 HIS A 663 60.04 66.91 REMARK 500 18 GLU B 944 -172.26 -59.01 REMARK 500 19 THR A 621 153.92 61.00 REMARK 500 19 GLU A 625 158.32 68.49 REMARK 500 19 ALA A 628 -74.19 -168.80 REMARK 500 19 LEU A 629 -77.74 -135.53 REMARK 500 19 LEU A 630 -45.10 -131.06 REMARK 500 19 HIS A 663 65.08 62.30 REMARK 500 20 GLU A 625 -179.13 175.62 REMARK 500 20 ALA A 628 -60.98 -92.59 REMARK 500 20 LEU A 629 -77.41 -118.56 REMARK 500 20 LEU A 630 -52.32 -138.14 REMARK 500 20 LYS A 654 103.11 -56.12 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1ZUB A 597 705 UNP Q9JIR4 RIMS1_RAT 597 705 DBREF 1ZUB B 939 948 UNP Q811U3 RB6I2_RAT 939 948
SEQADV 1ZUB GLY A 592 UNP Q9JIR4 CLONING ARTIFACT SEQADV 1ZUB SER A 593 UNP Q9JIR4 CLONING ARTIFACT SEQADV 1ZUB PRO A 594 UNP Q9JIR4 CLONING ARTIFACT SEQADV 1ZUB GLY A 595 UNP Q9JIR4 CLONING ARTIFACT SEQADV 1ZUB SER A 596 UNP Q9JIR4 CLONING ARTIFACT SEQADV 1ZUB CYS B 938 UNP Q811U3 CLONING ARTIFACT
SEQRES 1 A 114 GLY SER PRO GLY SER HIS PRO VAL THR TRP GLN PRO SER SEQRES 2 A 114 LYS GLU GLY ASP ARG LEU ILE GLY ARG VAL ILE LEU ASN SEQRES 3 A 114 LYS ARG THR THR MET PRO LYS GLU SER GLY ALA LEU LEU SEQRES 4 A 114 GLY LEU LYS VAL VAL GLY GLY LYS MET THR ASP LEU GLY SEQRES 5 A 114 ARG LEU GLY ALA PHE ILE THR LYS VAL LYS LYS GLY SER SEQRES 6 A 114 LEU ALA ASP VAL VAL GLY HIS LEU ARG ALA GLY ASP GLU SEQRES 7 A 114 VAL LEU GLU TRP ASN GLY LYS PRO LEU PRO GLY ALA THR SEQRES 8 A 114 ASN GLU GLU VAL TYR ASN ILE ILE LEU GLU SER LYS SER SEQRES 9 A 114 GLU PRO GLN VAL GLU ILE ILE VAL SER ARG SEQRES 1 B 11 CYS ASP GLN ASP GLU GLU GLU GLY ILE TRP ALA
HELIX 1 1 SER A 656 VAL A 661 1 6 HELIX 2 2 THR A 682 SER A 695 1 14
SHEET 1 A 5 THR A 600 PRO A 603 0 SHEET 2 A 5 LEU A 610 LEU A 616 -1 O ILE A 611 N GLN A 602 SHEET 3 A 5 VAL A 699 VAL A 703 -1 O ILE A 701 N VAL A 614 SHEET 4 A 5 VAL A 670 TRP A 673 -1 N GLU A 672 O ILE A 702 SHEET 5 A 5 LYS A 676 PRO A 677 -1 O LYS A 676 N TRP A 673 SHEET 1 B 2 LEU A 632 GLY A 636 0 SHEET 2 B 2 ALA A 647 VAL A 652 -1 O PHE A 648 N VAL A 635
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000