10 20 30 40 50 60 70 80 1ZR0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/BLOOD CLOTTING 18-MAY-05 1ZR0
TITLE CRYSTAL STRUCTURE OF KUNITZ DOMAIN 1 OF TISSUE FACTOR TITLE 2 PATHWAY INHIBITOR-2 WITH BOVINE TRYPSIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: BETA-TRYPSIN; COMPND 5 EC: 3.4.21.4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TISSUE FACTOR PATHWAY INHIBITOR 2; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: KUNITZ DOMAIN 1 (KD1); COMPND 10 SYNONYM: TFPI-2; PLACENTAL PROTEIN 5; PP5; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: NUMBERED ACCORDING TO THE BPTI NUMBERING COMPND 13 SYSTEM
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: TFPI2; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS SERINE PROTEASE; COMPLEX OF SERINE PROTEASE/INHIBITOR; KEYWDS 2 KUNITZ TYPE INHIBITOR, HYDROLASE/BLOOD CLOTTING COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.E.SCHMIDT,H.S.CHAND,D.CASCIO,W.KISIEL,S.P.BAJAJ
REVDAT 3 24-FEB-09 1ZR0 1 VERSN REVDAT 2 16-AUG-05 1ZR0 1 JRNL REVDAT 1 07-JUN-05 1ZR0 0
JRNL AUTH A.E.SCHMIDT,H.S.CHAND,D.CASCIO,W.KISIEL,S.P.BAJAJ JRNL TITL CRYSTAL STRUCTURE OF KUNITZ DOMAIN 1 (KD1) OF JRNL TITL 2 TISSUE FACTOR PATHWAY INHIBITOR-2 IN COMPLEX WITH JRNL TITL 3 TRYPSIN. IMPLICATIONS FOR KD1 SPECIFICITY OF JRNL TITL 4 INHIBITION JRNL REF J.BIOL.CHEM. V. 280 27832 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15932872 JRNL DOI 10.1074/JBC.M504105200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 60093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 519 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.025 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.069 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZR0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB033017.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 77.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.802 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1TAW REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, AMMONIUM SULFATE, CALCIUM REMARK 280 CHLORIDE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 310K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.05350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.71200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.50650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.71200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.05350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.50650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY CONSISTS OF ONE TRYPSIN MOLECULE AND REMARK 300 ONE KD1 MOLECULE IN COMPLEX.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 34 C SER A 37 N 0.149 REMARK 500 THR A 125 C SER A 127 N 0.164 REMARK 500 SER A 130 C ALA A 132 N 0.283 REMARK 500 TYR A 172 CE1 TYR A 172 CZ -0.084 REMARK 500 SER A 195 CB SER A 195 OG -0.086 REMARK 500 ASN C 72 C ASN C 72 O 0.134 REMARK 500 THR C 125 C SER C 127 N 0.364 REMARK 500 LYS C 204 C LEU C 209 N 0.331 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 125 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 SER A 127 C - N - CA ANGL. DEV. = 21.5 DEGREES REMARK 500 ASP A 194 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 9 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP B 10 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 31 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 52 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR C 125 O - C - N ANGL. DEV. = -24.3 DEGREES REMARK 500 ASP C 194 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU C 209 C - N - CA ANGL. DEV. = -18.7 DEGREES REMARK 500 LEU D 9 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 LEU D 9 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 -67.76 -124.88 REMARK 500 ASN A 115 -164.15 -161.61 REMARK 500 SER A 195 134.46 -38.26 REMARK 500 SER A 214 -72.34 -127.01 REMARK 500 GLU B 39 -133.13 57.82 REMARK 500 ASN B 44 103.27 -164.33 REMARK 500 ASN C 25 28.26 44.16 REMARK 500 ASP C 71 -63.89 -124.35 REMARK 500 ASN C 79 -51.54 126.20 REMARK 500 GLU C 80 161.12 -44.52 REMARK 500 ASN C 97 -44.64 82.96 REMARK 500 LEU C 99 95.23 38.04 REMARK 500 ASN C 115 -179.07 -173.27 REMARK 500 THR C 177 -147.29 -108.96 REMARK 500 CYS C 191 161.63 179.45 REMARK 500 SER C 214 -79.05 -124.41 REMARK 500 LYS C 222 126.23 -38.41 REMARK 500 GLU D 39 -132.42 63.50 REMARK 500 ASN D 44 110.43 -161.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 40 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 130 -10.27 REMARK 500 LYS A 204 -10.48 REMARK 500 THR C 125 30.57 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 60 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 121 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH D 133 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH C1091 DISTANCE = 7.72 ANGSTROMS REMARK 525 HOH C1099 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH C1109 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A1145 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A1168 DISTANCE = 5.08 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 ASN A 72 O 87.7 REMARK 620 3 VAL A 75 O 148.0 85.7 REMARK 620 4 HOH A1047 O 76.7 99.3 73.5 REMARK 620 5 GLU A 80 OE2 99.5 171.4 90.6 87.0 REMARK 620 6 HOH A1056 O 74.8 89.5 136.4 149.7 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 70 OE1 REMARK 620 2 VAL C 75 O 153.8 REMARK 620 3 GLU C 80 OE2 105.4 89.0 REMARK 620 4 HOH C1105 O 89.4 115.3 77.7 REMARK 620 5 HOH C1032 O 79.4 78.1 93.2 163.2 REMARK 620 6 ASN C 72 O 79.6 96.0 156.5 79.5 110.2 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1002
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TAW RELATED DB: PDB REMARK 900 STARTING MODEL
DBREF 1ZR0 A 16 245 UNP P00760 TRY1_BOVIN 21 243 DBREF 1ZR0 C 16 245 UNP P00760 TRY1_BOVIN 21 243 DBREF 1ZR0 B 1A 59 UNP P48307 TFPI2_HUMAN 28 90 DBREF 1ZR0 D 1A 59 UNP P48307 TFPI2_HUMAN 28 90
SEQADV 1ZR0 THR A 98 UNP P00760 ASP 165 CONFLICT SEQADV 1ZR0 THR C 98 UNP P00760 ASP 165 CONFLICT
SEQRES 1 A 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 A 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 A 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 A 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 A 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 A 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 A 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 A 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 A 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 A 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 A 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 A 223 SER THR SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 A 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 A 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 A 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 A 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 A 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 A 223 SER ASN SEQRES 1 B 63 PRO THR GLY ASN ASN ALA GLU ILE CYS LEU LEU PRO LEU SEQRES 2 B 63 ASP TYR GLY PRO CYS ARG ALA LEU LEU LEU ARG TYR TYR SEQRES 3 B 63 TYR ASP ARG TYR THR GLN SER CYS ARG GLN PHE LEU TYR SEQRES 4 B 63 GLY GLY CYS GLU GLY ASN ALA ASN ASN PHE TYR THR TRP SEQRES 5 B 63 GLU ALA CYS ASP ASP ALA CYS TRP ARG ILE GLU SEQRES 1 C 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 C 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 C 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 C 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 C 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 C 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 C 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 C 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 C 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 C 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 C 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 C 223 SER THR SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 C 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 C 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 C 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 C 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 C 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 C 223 SER ASN SEQRES 1 D 63 PRO THR GLY ASN ASN ALA GLU ILE CYS LEU LEU PRO LEU SEQRES 2 D 63 ASP TYR GLY PRO CYS ARG ALA LEU LEU LEU ARG TYR TYR SEQRES 3 D 63 TYR ASP ARG TYR THR GLN SER CYS ARG GLN PHE LEU TYR SEQRES 4 D 63 GLY GLY CYS GLU GLY ASN ALA ASN ASN PHE TYR THR TRP SEQRES 5 D 63 GLU ALA CYS ASP ASP ALA CYS TRP ARG ILE GLU
HET CA A1001 1 HET CA C1002 1
HETNAM CA CALCIUM ION
FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *519(H2 O)
HELIX 1 1 ALA A 55 TYR A 59 5 5 HELIX 2 2 SER A 164 TYR A 172 1 9 HELIX 3 3 TYR A 234 ASN A 245 1 12 HELIX 4 4 ASN B 1 LEU B 6 1 6 HELIX 5 5 THR B 47 CYS B 55 1 9 HELIX 6 6 ALA C 55 TYR C 59 5 5 HELIX 7 7 SER C 164 TYR C 172 1 9 HELIX 8 8 TYR C 234 ASN C 245 1 12 HELIX 9 9 ASN D 1 LEU D 6 1 6 HELIX 10 10 THR D 47 CYS D 55 1 9
SHEET 1 A 7 TYR A 20 THR A 21 0 SHEET 2 A 7 LYS A 156 PRO A 161 -1 O CYS A 157 N TYR A 20 SHEET 3 A 7 GLN A 135 GLY A 140 -1 N ILE A 138 O LEU A 158 SHEET 4 A 7 PRO A 198 CYS A 201 -1 O VAL A 200 N LEU A 137 SHEET 5 A 7 LYS A 204 TRP A 215 -1 O LYS A 204 N CYS A 201 SHEET 6 A 7 GLY A 226 LYS A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 A 7 MET A 180 ALA A 183 -1 N PHE A 181 O TYR A 228 SHEET 1 B 7 GLN A 30 ASN A 34 0 SHEET 2 B 7 HIS A 40 ASN A 48 -1 O CYS A 42 N LEU A 33 SHEET 3 B 7 TRP A 51 SER A 54 -1 O VAL A 53 N SER A 45 SHEET 4 B 7 MET A 104 LEU A 108 -1 O MET A 104 N SER A 54 SHEET 5 B 7 GLN A 81 VAL A 90 -1 N ILE A 89 O LEU A 105 SHEET 6 B 7 GLN A 64 LEU A 67 -1 N LEU A 67 O GLN A 81 SHEET 7 B 7 GLN A 30 ASN A 34 -1 N SER A 32 O ARG A 66 SHEET 1 C 2 LEU B 18 ASP B 24 0 SHEET 2 C 2 SER B 29 TYR B 35 -1 O TYR B 35 N LEU B 18 SHEET 1 D 7 TYR C 20 THR C 21 0 SHEET 2 D 7 LYS C 156 PRO C 161 -1 O CYS C 157 N TYR C 20 SHEET 3 D 7 GLN C 135 GLY C 140 -1 N ILE C 138 O LEU C 158 SHEET 4 D 7 PRO C 198 CYS C 201 -1 O VAL C 200 N LEU C 137 SHEET 5 D 7 LYS C 204 TRP C 215 -1 O LYS C 204 N CYS C 201 SHEET 6 D 7 GLY C 226 LYS C 230 -1 O VAL C 227 N TRP C 215 SHEET 7 D 7 MET C 180 ALA C 183 -1 N PHE C 181 O TYR C 228 SHEET 1 E 7 GLN C 30 ASN C 34 0 SHEET 2 E 7 HIS C 40 ASN C 48 -1 O CYS C 42 N LEU C 33 SHEET 3 E 7 TRP C 51 SER C 54 -1 O VAL C 53 N SER C 45 SHEET 4 E 7 MET C 104 LEU C 108 -1 O ILE C 106 N VAL C 52 SHEET 5 E 7 GLN C 81 VAL C 90 -1 N ILE C 89 O LEU C 105 SHEET 6 E 7 GLN C 64 LEU C 67 -1 N LEU C 67 O GLN C 81 SHEET 7 E 7 GLN C 30 ASN C 34 -1 N ASN C 34 O GLN C 64 SHEET 1 F 2 LEU D 18 ASP D 24 0 SHEET 2 F 2 SER D 29 TYR D 35 -1 O TYR D 35 N LEU D 18
SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.09 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.06 SSBOND 3 CYS A 128 CYS A 232 1555 1555 2.14 SSBOND 4 CYS A 136 CYS A 201 1555 1555 2.09 SSBOND 5 CYS A 168 CYS A 182 1555 1555 2.06 SSBOND 6 CYS A 191 CYS A 220 1555 1555 2.55 SSBOND 7 CYS B 5 CYS B 55 1555 1555 2.11 SSBOND 8 CYS B 14 CYS B 38 1555 1555 2.43 SSBOND 9 CYS B 30 CYS B 51 1555 1555 2.80 SSBOND 10 CYS C 22 CYS C 157 1555 1555 2.03 SSBOND 11 CYS C 42 CYS C 58 1555 1555 2.09 SSBOND 12 CYS C 128 CYS C 232 1555 1555 2.11 SSBOND 13 CYS C 136 CYS C 201 1555 1555 2.04 SSBOND 14 CYS C 168 CYS C 182 1555 1555 2.09 SSBOND 15 CYS D 5 CYS D 55 1555 1555 2.11 SSBOND 16 CYS D 14 CYS D 38 1555 1555 2.10 SSBOND 17 CYS D 30 CYS D 51 1555 1555 2.22
LINK CA CA A1001 OE1 GLU A 70 1555 1555 2.26 LINK CA CA A1001 O ASN A 72 1555 1555 2.33 LINK CA CA A1001 O VAL A 75 1555 1555 2.41 LINK CA CA A1001 O HOH A1047 1555 1555 2.52 LINK CA CA A1001 OE2 GLU A 80 1555 1555 2.39 LINK CA CA A1001 O HOH A1056 1555 1555 2.54 LINK CA CA C1002 OE1 GLU C 70 1555 1555 2.33 LINK CA CA C1002 O VAL C 75 1555 1555 2.41 LINK CA CA C1002 OE2 GLU C 80 1555 1555 2.28 LINK CA CA C1002 O HOH C1105 1555 1555 2.35 LINK CA CA C1002 O HOH C1032 1555 1555 2.49 LINK CA CA C1002 O ASN C 72 1555 1555 1.93
SITE 1 AC1 6 GLU A 70 ASN A 72 VAL A 75 GLU A 80 SITE 2 AC1 6 HOH A1047 HOH A1056 SITE 1 AC2 6 GLU C 70 ASN C 72 VAL C 75 GLU C 80 SITE 2 AC2 6 HOH C1032 HOH C1105
CRYST1 74.107 77.013 125.424 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013494 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012985 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007973 0.00000