10 20 30 40 50 60 70 80 1ZJQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TOXIN 30-APR-05 1ZJQ
TITLE SOLUTION STRUCTURE OF JINGZHAOTOXIN-VII
COMPND MOL_ID: 1; COMPND 2 MOLECULE: JINGZHAOTOXIN-VII; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHILOBRACHYS JINGZHAO; SOURCE 3 ORGANISM_TAXID: 278060
KEYWDS INHIBITOR CYSTINE KNOT MOTIF, TOXIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Z.LIAO
REVDAT 2 24-FEB-09 1ZJQ 1 VERSN REVDAT 1 24-MAY-05 1ZJQ 0
JRNL AUTH Z.LIAO JRNL TITL SOLUTION STRUCTURE OF JINGZHAOTOXIN-VII JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH2.9.6 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 405 NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS, 6 DIHEDRAL ANGLE RESTRAINTS, 9 REMARK 3 FAKE DISTANCE RESTRAINTS FROM DISULFIDE BONDS
REMARK 4 REMARK 4 1ZJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB032794.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 6MM/L JZTX-VII, 20MM REMARK 210 PHOSPHATE BUFFER, DEUTERIUM REMARK 210 ACETIC ACID REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 MATRIX RELAXATION, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 11 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 6 47.62 -143.00 REMARK 500 1 ALA A 7 -157.89 -76.10 REMARK 500 1 SER A 13 36.78 -159.42 REMARK 500 1 CYS A 16 -152.57 50.74 REMARK 500 1 CYS A 17 -72.92 -102.68 REMARK 500 2 MET A 6 42.05 -143.78 REMARK 500 2 CYS A 9 48.60 -108.27 REMARK 500 2 CYS A 16 -145.20 -112.75 REMARK 500 2 CYS A 17 -60.14 -91.02 REMARK 500 2 SER A 18 -126.64 -123.41 REMARK 500 2 TYR A 20 112.45 -38.81 REMARK 500 3 MET A 6 43.96 -150.56 REMARK 500 3 CYS A 9 40.18 -108.71 REMARK 500 3 LYS A 12 19.88 58.07 REMARK 500 3 SER A 13 37.15 -172.58 REMARK 500 3 CYS A 16 -144.46 -80.93 REMARK 500 3 CYS A 17 -71.45 -81.40 REMARK 500 3 SER A 18 112.15 -167.42 REMARK 500 4 MET A 6 29.79 -150.85 REMARK 500 4 ASP A 10 78.68 51.15 REMARK 500 4 CYS A 16 -150.42 -115.65 REMARK 500 4 CYS A 17 -70.97 -91.40 REMARK 500 4 SER A 18 92.56 -172.17 REMARK 500 4 ARG A 33 82.58 60.67 REMARK 500 5 MET A 6 40.97 -144.96 REMARK 500 5 ALA A 7 -157.62 -82.71 REMARK 500 5 CYS A 9 -76.68 -74.24 REMARK 500 5 SER A 13 49.36 -142.07 REMARK 500 5 CYS A 16 -149.07 -86.39 REMARK 500 5 SER A 18 -81.81 -157.91 REMARK 500 5 ARG A 33 80.40 47.58 REMARK 500 6 MET A 6 31.70 -146.73 REMARK 500 6 ASP A 10 70.08 54.35 REMARK 500 6 CYS A 16 -157.38 -80.39 REMARK 500 6 CYS A 17 -78.92 -70.40 REMARK 500 6 SER A 18 114.73 -165.48 REMARK 500 7 CYS A 2 -155.75 -86.63 REMARK 500 7 MET A 6 42.44 -144.09 REMARK 500 7 CYS A 16 -151.35 -126.88 REMARK 500 7 SER A 18 -76.37 -150.66 REMARK 500 8 MET A 6 32.44 -150.48 REMARK 500 8 ALA A 7 -163.71 -71.68 REMARK 500 8 CYS A 16 -165.51 -103.54 REMARK 500 8 CYS A 17 -70.26 -79.85 REMARK 500 8 VAL A 30 -167.60 -129.99 REMARK 500 9 MET A 6 34.75 -150.27 REMARK 500 9 ASP A 10 77.44 55.16 REMARK 500 9 SER A 13 49.57 -148.56 REMARK 500 9 THR A 14 -169.46 -74.62 REMARK 500 9 CYS A 16 -146.53 -98.67 REMARK 500 9 CYS A 17 -105.51 -94.49 REMARK 500 9 SER A 18 21.18 -142.25 REMARK 500 10 MET A 6 32.85 -149.93 REMARK 500 10 CYS A 9 -77.39 -95.33 REMARK 500 10 ASP A 10 73.94 51.55 REMARK 500 10 THR A 14 -178.20 -69.40 REMARK 500 10 CYS A 16 -157.77 -131.98 REMARK 500 10 SER A 18 -48.64 -168.51 REMARK 500 11 LEU A 5 -7.37 70.42 REMARK 500 11 MET A 6 25.81 -151.87 REMARK 500 11 CYS A 9 -73.53 -79.32 REMARK 500 11 CYS A 16 -154.28 -101.09 REMARK 500 11 CYS A 17 -73.04 -78.72 REMARK 500 11 SER A 18 -44.20 -166.30 REMARK 500 12 CYS A 2 75.84 54.24 REMARK 500 12 MET A 6 33.87 -149.59 REMARK 500 12 ALA A 7 -167.97 -74.05 REMARK 500 12 CYS A 9 53.31 -99.61 REMARK 500 12 CYS A 16 -144.29 -90.19 REMARK 500 12 SER A 18 -48.48 -164.92 REMARK 500 13 MET A 6 41.78 -149.94 REMARK 500 13 ALA A 7 -165.88 -72.53 REMARK 500 13 CYS A 9 -77.52 -80.32 REMARK 500 13 CYS A 16 -138.59 -95.31 REMARK 500 13 CYS A 17 -85.37 -91.30 REMARK 500 13 SER A 18 -47.63 -146.86 REMARK 500 14 MET A 6 31.94 -150.73 REMARK 500 14 CYS A 9 -74.44 -90.76 REMARK 500 14 ASP A 10 92.08 57.09 REMARK 500 14 SER A 13 48.02 -170.31 REMARK 500 14 CYS A 17 -85.24 -64.31 REMARK 500 14 SER A 18 88.77 -158.99 REMARK 500 15 MET A 6 32.45 -150.22 REMARK 500 15 CYS A 9 -71.33 -90.66 REMARK 500 15 ASP A 10 99.78 61.48 REMARK 500 15 LYS A 12 19.96 59.57 REMARK 500 15 SER A 13 45.59 -170.22 REMARK 500 15 CYS A 16 -141.78 -86.01 REMARK 500 15 CYS A 17 -101.20 -75.59 REMARK 500 15 VAL A 30 -167.21 -113.68 REMARK 500 15 ARG A 33 70.77 -118.78 REMARK 500 16 MET A 6 29.98 -150.31 REMARK 500 16 SER A 13 38.85 -176.30 REMARK 500 16 SER A 18 -45.00 -173.29 REMARK 500 17 MET A 6 29.41 -148.80 REMARK 500 17 ASP A 10 106.53 -49.79 REMARK 500 17 CYS A 16 -156.55 -103.19 REMARK 500 17 CYS A 17 -68.71 -92.54 REMARK 500 18 MET A 6 35.87 -148.58 REMARK 500 18 CYS A 9 -82.80 -93.57 REMARK 500 18 SER A 13 58.75 -159.35 REMARK 500 18 CYS A 16 -162.70 -126.02 REMARK 500 18 CYS A 17 -86.00 -80.91 REMARK 500 19 MET A 6 36.79 -145.61 REMARK 500 19 ALA A 7 -165.71 -73.29 REMARK 500 19 CYS A 9 -77.63 -70.92 REMARK 500 19 CYS A 16 -155.24 -87.31 REMARK 500 19 CYS A 17 -92.80 -78.66 REMARK 500 19 ARG A 33 66.95 -155.36 REMARK 500 20 LEU A 5 -3.96 68.26 REMARK 500 20 MET A 6 27.68 -151.42 REMARK 500 20 CYS A 16 -162.33 -129.50 REMARK 500 20 CYS A 17 -76.99 -76.60 REMARK 500 20 VAL A 30 -169.34 -124.38 REMARK 500 20 ARG A 33 -62.41 -162.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 33 0.30 SIDE_CHAIN REMARK 500 2 ARG A 33 0.29 SIDE_CHAIN REMARK 500 3 ARG A 33 0.30 SIDE_CHAIN REMARK 500 4 ARG A 33 0.32 SIDE_CHAIN REMARK 500 5 ARG A 33 0.30 SIDE_CHAIN REMARK 500 6 ARG A 33 0.21 SIDE_CHAIN REMARK 500 7 ARG A 33 0.31 SIDE_CHAIN REMARK 500 8 ARG A 33 0.30 SIDE_CHAIN REMARK 500 9 ARG A 33 0.32 SIDE_CHAIN REMARK 500 10 ARG A 33 0.28 SIDE_CHAIN REMARK 500 11 ARG A 33 0.31 SIDE_CHAIN REMARK 500 12 ARG A 33 0.30 SIDE_CHAIN REMARK 500 13 ARG A 33 0.31 SIDE_CHAIN REMARK 500 14 ARG A 33 0.32 SIDE_CHAIN REMARK 500 15 ARG A 33 0.28 SIDE_CHAIN REMARK 500 16 ARG A 33 0.30 SIDE_CHAIN REMARK 500 17 ARG A 33 0.32 SIDE_CHAIN REMARK 500 18 ARG A 33 0.32 SIDE_CHAIN REMARK 500 19 ARG A 33 0.29 SIDE_CHAIN REMARK 500 20 ARG A 33 0.30 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1ZJQ A 1 34 PDB 1ZJQ 1ZJQ 1 34
SEQRES 1 A 34 GLY CYS GLY GLY LEU MET ALA GLY CYS ASP GLY LYS SER SEQRES 2 A 34 THR PHE CYS CYS SER GLY TYR ASN CYS SER PRO THR TRP SEQRES 3 A 34 LYS TRP CYS VAL TYR ALA ARG PRO
SHEET 1 A 2 TYR A 20 SER A 23 0 SHEET 2 A 2 TRP A 28 TYR A 31 -1 O VAL A 30 N ASN A 21
SSBOND 1 CYS A 2 CYS A 17 1555 1555 2.02 SSBOND 2 CYS A 9 CYS A 22 1555 1555 2.02 SSBOND 3 CYS A 16 CYS A 29 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000