10 20 30 40 50 60 70 80 1ZG5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/DNA 20-APR-05 1ZG5
TITLE NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL TITLE 2 DNA SITE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP COMPND 4 *G)-3'; COMPND 5 CHAIN: C, D, G, H; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL; COMPND 9 CHAIN: A, B, E, F; COMPND 10 FRAGMENT: DNA BINDING DOMAIN (RESIDUES 147-216); COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID PHASE SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 GENE: NARL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMJ05
KEYWDS PROTEIN-DNA COMPLEX, HELIX-TURN-HELIX, TWO-COMPONENT KEYWDS 2 RESPONSE REGULATOR, DNA BENDING, TRANSCRIPTION/DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.E.MARIS,M.KACZOR-GRZESKOWIAK,Z.MA,M.L.KOPKA,R.P.GUNSALUS, AUTHOR 2 R.E.DICKERSON
REVDAT 2 24-FEB-09 1ZG5 1 VERSN REVDAT 1 22-NOV-05 1ZG5 0
JRNL AUTH A.E.MARIS,M.KACZOR-GRZESKOWIAK,Z.MA,M.L.KOPKA, JRNL AUTH 2 R.P.GUNSALUS,R.E.DICKERSON JRNL TITL PRIMARY AND SECONDARY MODES OF DNA RECOGNITION BY JRNL TITL 2 THE NARL TWO-COMPONENT RESPONSE REGULATOR. JRNL REF BIOCHEMISTRY V. 44 14538 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16262254 JRNL DOI 10.1021/BI050734U
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.E.MARIS,M.R.SAWAYA,M.KACZOR-GRZESKOWIAK, REMARK 1 AUTH 2 M.R.JARVIS,S.M.D.BEARSON,M.L.KOPKA,I.SCHROEDER, REMARK 1 AUTH 3 R.P.GUNSALUS,R.E.DICKERSON REMARK 1 TITL DIMERIZATION ALLOWS DNA TARGET SITE RECOGNITION BY REMARK 1 TITL 2 THE NARL RESPONSE REGULATOR REMARK 1 REF NAT.STRUCT.BIOL. V. 9 771 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.BAIKALOV,I.SCHROEDER,M.KACZOR-GRZESKOWIAK, REMARK 1 AUTH 2 K.GRZESKOWIAK,R.P.GUNSALUS,R.E.DICKERSON REMARK 1 TITL STRUCTURE OF THE ESCHERICHIA COLI RESPONSE REMARK 1 TITL 2 REGULATOR NARL REMARK 1 REF BIOCHEMISTRY V. 35 11053 1996 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 1628 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83900 REMARK 3 B22 (A**2) : 7.06500 REMARK 3 B33 (A**2) : -8.90500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.187 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.036 ; 0.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.844 ; 0.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.910 ; 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 38.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZG5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032680.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.13100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : 0.95400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JE8 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER BOUND TO DNA. THERE ARE REMARK 300 TWO BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT (CHAINS A, B, C & D REMARK 300 AND CHAINS E, F, G & H)
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 ALA A 147 REMARK 465 THR A 148 REMARK 465 THR A 149 REMARK 465 GLU A 150 REMARK 465 MSE B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 SER B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 GLY B 145 REMARK 465 SER B 146 REMARK 465 ALA B 147 REMARK 465 THR B 148 REMARK 465 THR B 149 REMARK 465 GLU B 150 REMARK 465 MSE E 135 REMARK 465 ARG E 136 REMARK 465 GLY E 137 REMARK 465 SER E 138 REMARK 465 HIS E 139 REMARK 465 HIS E 140 REMARK 465 HIS E 141 REMARK 465 HIS E 142 REMARK 465 HIS E 143 REMARK 465 HIS E 144 REMARK 465 GLY E 145 REMARK 465 SER E 146 REMARK 465 ALA E 147 REMARK 465 THR E 148 REMARK 465 THR E 149 REMARK 465 MSE F 135 REMARK 465 ARG F 136 REMARK 465 GLY F 137 REMARK 465 SER F 138 REMARK 465 HIS F 139 REMARK 465 HIS F 140 REMARK 465 HIS F 141 REMARK 465 HIS F 142 REMARK 465 HIS F 143 REMARK 465 HIS F 144 REMARK 465 GLY F 145 REMARK 465 SER F 146 REMARK 465 ALA F 147 REMARK 465 THR F 148 REMARK 465 THR F 149 REMARK 465 GLU F 150
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 214 63.89 39.11 REMARK 500 ASP E 152 109.39 63.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 48 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 321 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH D 62 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A 336 DISTANCE = 6.40 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 304 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 306 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 307 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 308 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 309 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 310 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 311 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 312
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZG1 RELATED DB: PDB REMARK 900 NARL COMPLEX WITH NIRB PROMOTER NONPALINDROMIC DNA REMARK 900 RELATED ID: 1JE8 RELATED DB: PDB REMARK 900 NARL COMPLEX WITH NIRB PROMOTER PALINDROMIC DNA REMARK 900 RELATED ID: 1RNL RELATED DB: PDB REMARK 900 FULL-LENGTH UNACTIVATED NARL REMARK 900 RELATED ID: 1A04 RELATED DB: PDB REMARK 900 FULL-LENGTH UNACTIVATED NARL
DBREF 1ZG5 A 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 B 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 E 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 F 147 216 UNP P0AF28 NARL_ECOLI 147 216 DBREF 1ZG5 C 1 20 PDB 1ZG5 1ZG5 1 20 DBREF 1ZG5 D 21 40 PDB 1ZG5 1ZG5 21 40 DBREF 1ZG5 G 1 20 PDB 1ZG5 1ZG5 1 20 DBREF 1ZG5 H 21 40 PDB 1ZG5 1ZG5 21 40
SEQADV 1ZG5 MSE A 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG A 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY A 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER A 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS A 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY A 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER A 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE A 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE A 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE A 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQADV 1ZG5 MSE B 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG B 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY B 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER B 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS B 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY B 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER B 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE B 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE B 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE B 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQADV 1ZG5 MSE E 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG E 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY E 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER E 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS E 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY E 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER E 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE E 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE E 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE E 198 UNP P0AF28 MET 198 MODIFIED RESIDUE SEQADV 1ZG5 MSE F 135 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 ARG F 136 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY F 137 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER F 138 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 139 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 140 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 141 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 142 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 143 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 HIS F 144 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 GLY F 145 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 SER F 146 UNP P0AF28 EXPRESSION TAG SEQADV 1ZG5 MSE F 175 UNP P0AF28 MET 175 MODIFIED RESIDUE SEQADV 1ZG5 MSE F 194 UNP P0AF28 MET 194 MODIFIED RESIDUE SEQADV 1ZG5 MSE F 198 UNP P0AF28 MET 198 MODIFIED RESIDUE
SEQRES 1 C 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 C 20 DG DG DG DT DA DC DG SEQRES 1 D 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 D 20 DG DG DG DT DA DC DG SEQRES 1 G 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 G 20 DG DG DG DT DA DC DG SEQRES 1 H 20 DC DG DT DA DC DC DC DC DT DA DT DA DG SEQRES 2 H 20 DG DG DG DT DA DC DG SEQRES 1 A 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 A 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 A 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 A 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 A 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 A 82 GLU ARG ILE PHE SEQRES 1 B 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 B 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 B 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 B 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 B 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 B 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 B 82 GLU ARG ILE PHE SEQRES 1 E 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 E 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 E 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 E 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 E 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 E 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 E 82 GLU ARG ILE PHE SEQRES 1 F 82 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 F 82 THR THR GLU ARG ASP VAL ASN GLN LEU THR PRO ARG GLU SEQRES 3 F 82 ARG ASP ILE LEU LYS LEU ILE ALA GLN GLY LEU PRO ASN SEQRES 4 F 82 LYS MSE ILE ALA ARG ARG LEU ASP ILE THR GLU SER THR SEQRES 5 F 82 VAL LYS VAL HIS VAL LYS HIS MSE LEU LYS LYS MSE LYS SEQRES 6 F 82 LEU LYS SER ARG VAL GLU ALA ALA VAL TRP VAL HIS GLN SEQRES 7 F 82 GLU ARG ILE PHE
MODRES 1ZG5 MSE A 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE A 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE A 198 MET SELENOMETHIONINE MODRES 1ZG5 MSE B 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE B 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE B 198 MET SELENOMETHIONINE MODRES 1ZG5 MSE E 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE E 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE E 198 MET SELENOMETHIONINE MODRES 1ZG5 MSE F 175 MET SELENOMETHIONINE MODRES 1ZG5 MSE F 194 MET SELENOMETHIONINE MODRES 1ZG5 MSE F 198 MET SELENOMETHIONINE
HET MSE A 175 8 HET MSE A 194 8 HET MSE A 198 8 HET MSE B 175 8 HET MSE B 194 8 HET MSE B 198 8 HET MSE E 175 8 HET MSE E 194 8 HET MSE E 198 8 HET MSE F 175 8 HET MSE F 194 8 HET MSE F 198 8 HET SO4 F 301 5 HET SO4 A 302 5 HET SO4 B 303 5 HET SO4 F 304 5 HET SO4 A 305 5 HET SO4 B 306 5 HET SO4 E 307 5 HET SO4 E 308 5 HET SO4 A 309 5 HET SO4 B 310 5 HET SO4 E 311 5 HET SO4 F 312 5
HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION
FORMUL 5 MSE 12(C5 H11 N O2 SE) FORMUL 9 SO4 12(O4 S 2-) FORMUL 21 HOH *260(H2 O)
HELIX 1 1 ASP A 152 LEU A 156 5 5 HELIX 2 2 THR A 157 GLN A 169 1 13 HELIX 3 3 PRO A 172 LEU A 180 1 9 HELIX 4 4 THR A 183 LYS A 199 1 17 HELIX 5 5 SER A 202 GLU A 213 1 12 HELIX 6 6 ASP B 152 LEU B 156 5 5 HELIX 7 7 THR B 157 GLN B 169 1 13 HELIX 8 8 PRO B 172 ASP B 181 1 10 HELIX 9 9 THR B 183 MSE B 198 1 16 HELIX 10 10 SER B 202 GLU B 213 1 12 HELIX 11 11 ASP E 152 LEU E 156 5 5 HELIX 12 12 THR E 157 GLN E 169 1 13 HELIX 13 13 PRO E 172 ASP E 181 1 10 HELIX 14 14 THR E 183 LYS E 199 1 17 HELIX 15 15 SER E 202 GLU E 213 1 12 HELIX 16 16 ASP F 152 LEU F 156 5 5 HELIX 17 17 THR F 157 ALA F 168 1 12 HELIX 18 18 PRO F 172 ASP F 181 1 10 HELIX 19 19 THR F 183 LYS F 199 1 17 HELIX 20 20 SER F 202 GLU F 213 1 12
LINK C LYS A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N ILE A 176 1555 1555 1.33 LINK C HIS A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N LEU A 195 1555 1555 1.33 LINK C LYS A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N LYS A 199 1555 1555 1.32 LINK C LYS B 174 N MSE B 175 1555 1555 1.33 LINK C MSE B 175 N ILE B 176 1555 1555 1.33 LINK C HIS B 193 N MSE B 194 1555 1555 1.33 LINK C MSE B 194 N LEU B 195 1555 1555 1.34 LINK C LYS B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N LYS B 199 1555 1555 1.32 LINK C LYS E 174 N MSE E 175 1555 1555 1.33 LINK C MSE E 175 N ILE E 176 1555 1555 1.33 LINK C HIS E 193 N MSE E 194 1555 1555 1.33 LINK C MSE E 194 N LEU E 195 1555 1555 1.33 LINK C LYS E 197 N MSE E 198 1555 1555 1.33 LINK C MSE E 198 N LYS E 199 1555 1555 1.33 LINK C LYS F 174 N MSE F 175 1555 1555 1.33 LINK C MSE F 175 N ILE F 176 1555 1555 1.33 LINK C HIS F 193 N MSE F 194 1555 1555 1.33 LINK C MSE F 194 N LEU F 195 1555 1555 1.33 LINK C LYS F 197 N MSE F 198 1555 1555 1.33 LINK C MSE F 198 N LYS F 199 1555 1555 1.32
SITE 1 AC1 2 ARG F 161 HOH F 342 SITE 1 AC2 1 ARG A 161 SITE 1 AC3 3 PRO B 158 ARG B 161 HOH B 329 SITE 1 AC4 8 SER F 185 LYS F 188 HOH F 325 HOH F 326 SITE 2 AC4 8 DC G 5 DC G 6 HOH H 50 HOH H 52 SITE 1 AC5 7 SER A 185 LYS A 188 HOH A 312 HOH C 27 SITE 2 AC5 7 HOH C 52 DC D 25 DC D 26 SITE 1 AC6 8 SER B 185 LYS B 188 HOH B 325 HOH B 334 SITE 2 AC6 8 HOH B 341 DC C 6 HOH D 53 HOH D 63 SITE 1 AC7 8 SER E 185 LYS E 188 HOH E 323 HOH E 324 SITE 2 AC7 8 HOH G 30 HOH G 51 DC H 25 DC H 26 SITE 1 AC8 2 PRO E 158 ARG E 161 SITE 1 AC9 1 ARG A 178 SITE 1 BC1 1 ARG B 178 SITE 1 BC2 1 ARG E 178 SITE 1 BC3 1 ARG F 178
CRYST1 76.890 52.570 84.610 90.00 90.00 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013006 0.000000 0.000000 0.00000
SCALE2 0.000000 0.019022 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011819 0.00000