10 20 30 40 50 60 70 80 1ZES - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION ACTIVATOR 19-APR-05 1ZES
TITLE BEF3- ACTIVATED PHOB RECEIVER DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY COMPND 3 PROTEIN PHOB; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-125); COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PHOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PJES307; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEF28; SOURCE 10 OTHER_DETAILS: RESTRICTION SITES NDE1, BAMH1
KEYWDS CHEY-LIKE FOLD, RESPONSE REGULATOR, TRANSCRIPTION FACTOR, KEYWDS 2 PHOB, ACTIVATED, TRANSCRIPTION ACTIVATOR
EXPDTA X-RAY DIFFRACTION
AUTHOR P.BACHHAWAT,G.T.MONTELIONE,A.M.STOCK
REVDAT 2 24-FEB-09 1ZES 1 VERSN REVDAT 1 20-SEP-05 1ZES 0
JRNL AUTH P.BACHHAWAT,G.V.SWAPNA,G.T.MONTELIONE,A.M.STOCK JRNL TITL MECHANISM OF ACTIVATION FOR TRANSCRIPTION FACTOR JRNL TITL 2 PHOB SUGGESTED BY DIFFERENT MODES OF DIMERIZATION JRNL TITL 3 IN THE INACTIVE AND ACTIVE STATES. JRNL REF STRUCTURE V. 13 1353 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16154092 JRNL DOI 10.1016/J.STR.2005.06.006
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 22248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2890 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3910 ; 1.567 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 5.966 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.946 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;14.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.430 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2175 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1334 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1998 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 217 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.037 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.223 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1872 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2904 ; 1.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 2.342 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1006 ; 3.860 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B C A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 3 B 38 6 REMARK 3 1 C 3 C 38 6 REMARK 3 1 A 3 A 38 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 C (A): 260 ; 0.43 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 260 ; 0.40 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 A (A): 260 ; 0.60 ; 5.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 260 ; 2.05 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 260 ; 1.90 ; 10.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 260 ; 1.77 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZES COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032635.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97176 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR WITH A REMARK 200 SAGITTALLY FOCUSED SECOND REMARK 200 CRYSTAL. CRYSTAL TYPE SI(111) REMARK 200 OPTICS : SPHERICAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 11.710 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.89 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.78000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM THIOCYANATE, PEG3350, PH REMARK 280 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.53550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.93450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.93450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.80325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.93450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.93450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.26775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.93450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.93450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.80325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.93450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.93450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.26775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.53550 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAINS B AND C FORM A DIMER WHICH IS THE BIOLOGICAL REMARK 300 UNIT, A FORMS A DIMER WITH A SYM METRY RELATED MOLECULE
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.53550 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 343 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 124 REMARK 465 GLN A 125 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 44 REMARK 465 PRO B 45 REMARK 465 ILE B 123 REMARK 465 SER B 124 REMARK 465 GLN B 125 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ILE C 123 REMARK 465 SER C 124 REMARK 465 GLN C 125
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 46 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 46 CZ3 CH2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 ARG C 70 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 110 CG CD CE NZ
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 333 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A 335 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 365 DISTANCE = 8.65 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 53 OD2 REMARK 620 2 ASP A 10 OD1 91.2 REMARK 620 3 HOH A 303 O 86.1 86.6 REMARK 620 4 MET A 55 O 96.7 93.4 177.2 REMARK 620 5 HOH A 304 O 173.1 91.3 87.6 89.6 REMARK 620 6 BEF A 201 F1 87.0 175.4 89.0 91.1 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 53 OD2 REMARK 620 2 BEF B 202 F1 86.8 REMARK 620 3 HOH B 304 O 91.5 90.1 REMARK 620 4 MET B 55 O 84.4 91.2 175.6 REMARK 620 5 HOH B 307 O 170.0 97.6 97.4 86.6 REMARK 620 6 ASP B 10 OD1 85.0 171.2 86.9 91.2 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BEF C 203 F1 REMARK 620 2 ASP C 10 OD1 166.6 REMARK 620 3 HOH C 309 O 88.1 94.8 REMARK 620 4 MET C 55 O 90.6 85.9 177.0 REMARK 620 5 HOH C 315 O 102.9 89.9 94.8 88.0 REMARK 620 6 ASP C 53 OD2 83.5 83.3 91.7 85.6 171.0 REMARK 620 N 1 2 3 4 5
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 201 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF B 202 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF C 203
DBREF 1ZES A 1 125 UNP P08402 PHOB_ECOLI 1 125 DBREF 1ZES B 1 125 UNP P08402 PHOB_ECOLI 1 125 DBREF 1ZES C 1 125 UNP P08402 PHOB_ECOLI 1 125
SEQADV 1ZES GLN A 125 UNP P08402 PRO 125 ENGINEERED SEQADV 1ZES GLN B 125 UNP P08402 PRO 125 ENGINEERED SEQADV 1ZES GLN C 125 UNP P08402 PRO 125 ENGINEERED
SEQRES 1 A 125 MET ALA ARG ARG ILE LEU VAL VAL GLU ASP GLU ALA PRO SEQRES 2 A 125 ILE ARG GLU MET VAL CYS PHE VAL LEU GLU GLN ASN GLY SEQRES 3 A 125 PHE GLN PRO VAL GLU ALA GLU ASP TYR ASP SER ALA VAL SEQRES 4 A 125 ASN GLN LEU ASN GLU PRO TRP PRO ASP LEU ILE LEU LEU SEQRES 5 A 125 ASP TRP MET LEU PRO GLY GLY SER GLY ILE GLN PHE ILE SEQRES 6 A 125 LYS HIS LEU LYS ARG GLU SER MET THR ARG ASP ILE PRO SEQRES 7 A 125 VAL VAL MET LEU THR ALA ARG GLY GLU GLU GLU ASP ARG SEQRES 8 A 125 VAL ARG GLY LEU GLU THR GLY ALA ASP ASP TYR ILE THR SEQRES 9 A 125 LYS PRO PHE SER PRO LYS GLU LEU VAL ALA ARG ILE LYS SEQRES 10 A 125 ALA VAL MET ARG ARG ILE SER GLN SEQRES 1 B 125 MET ALA ARG ARG ILE LEU VAL VAL GLU ASP GLU ALA PRO SEQRES 2 B 125 ILE ARG GLU MET VAL CYS PHE VAL LEU GLU GLN ASN GLY SEQRES 3 B 125 PHE GLN PRO VAL GLU ALA GLU ASP TYR ASP SER ALA VAL SEQRES 4 B 125 ASN GLN LEU ASN GLU PRO TRP PRO ASP LEU ILE LEU LEU SEQRES 5 B 125 ASP TRP MET LEU PRO GLY GLY SER GLY ILE GLN PHE ILE SEQRES 6 B 125 LYS HIS LEU LYS ARG GLU SER MET THR ARG ASP ILE PRO SEQRES 7 B 125 VAL VAL MET LEU THR ALA ARG GLY GLU GLU GLU ASP ARG SEQRES 8 B 125 VAL ARG GLY LEU GLU THR GLY ALA ASP ASP TYR ILE THR SEQRES 9 B 125 LYS PRO PHE SER PRO LYS GLU LEU VAL ALA ARG ILE LYS SEQRES 10 B 125 ALA VAL MET ARG ARG ILE SER GLN SEQRES 1 C 125 MET ALA ARG ARG ILE LEU VAL VAL GLU ASP GLU ALA PRO SEQRES 2 C 125 ILE ARG GLU MET VAL CYS PHE VAL LEU GLU GLN ASN GLY SEQRES 3 C 125 PHE GLN PRO VAL GLU ALA GLU ASP TYR ASP SER ALA VAL SEQRES 4 C 125 ASN GLN LEU ASN GLU PRO TRP PRO ASP LEU ILE LEU LEU SEQRES 5 C 125 ASP TRP MET LEU PRO GLY GLY SER GLY ILE GLN PHE ILE SEQRES 6 C 125 LYS HIS LEU LYS ARG GLU SER MET THR ARG ASP ILE PRO SEQRES 7 C 125 VAL VAL MET LEU THR ALA ARG GLY GLU GLU GLU ASP ARG SEQRES 8 C 125 VAL ARG GLY LEU GLU THR GLY ALA ASP ASP TYR ILE THR SEQRES 9 C 125 LYS PRO PHE SER PRO LYS GLU LEU VAL ALA ARG ILE LYS SEQRES 10 C 125 ALA VAL MET ARG ARG ILE SER GLN
HET MG C 301 1 HET MG A 302 1 HET MG B 303 1 HET BEF A 201 4 HET BEF B 202 4 HET BEF C 203 4
HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION
FORMUL 4 MG 3(MG 2+) FORMUL 7 BEF 3(BE F3 1-) FORMUL 10 HOH *179(H2 O)
HELIX 1 1 GLU A 11 ASN A 25 1 15 HELIX 2 2 ASP A 34 LEU A 42 1 9 HELIX 3 3 SER A 60 GLU A 71 1 12 HELIX 4 4 GLU A 87 GLY A 98 1 12 HELIX 5 5 SER A 108 ARG A 122 1 15 HELIX 6 6 GLU B 11 ASN B 25 1 15 HELIX 7 7 ASP B 34 LEU B 42 1 9 HELIX 8 8 SER B 60 GLU B 71 1 12 HELIX 9 9 GLU B 87 GLY B 98 1 12 HELIX 10 10 SER B 108 ARG B 121 1 14 HELIX 11 11 GLU C 11 ASN C 25 1 15 HELIX 12 12 ASP C 34 ASN C 40 1 7 HELIX 13 13 SER C 60 GLU C 71 1 12 HELIX 14 14 GLU C 87 GLY C 98 1 12 HELIX 15 15 SER C 108 ARG C 122 1 15
SHEET 1 A 5 GLN A 28 ALA A 32 0 SHEET 2 A 5 ARG A 4 VAL A 8 1 N VAL A 7 O VAL A 30 SHEET 3 A 5 LEU A 49 LEU A 52 1 O LEU A 51 N VAL A 8 SHEET 4 A 5 VAL A 79 THR A 83 1 O VAL A 80 N LEU A 52 SHEET 5 A 5 ASP A 101 THR A 104 1 O ILE A 103 N MET A 81 SHEET 1 B 5 GLN B 28 ALA B 32 0 SHEET 2 B 5 ARG B 4 VAL B 8 1 N VAL B 7 O VAL B 30 SHEET 3 B 5 LEU B 49 LEU B 52 1 O LEU B 51 N VAL B 8 SHEET 4 B 5 VAL B 79 THR B 83 1 O VAL B 80 N ILE B 50 SHEET 5 B 5 ASP B 101 THR B 104 1 O ILE B 103 N MET B 81 SHEET 1 C 5 GLN C 28 ALA C 32 0 SHEET 2 C 5 ARG C 4 VAL C 8 1 N VAL C 7 O VAL C 30 SHEET 3 C 5 LEU C 49 LEU C 52 1 O LEU C 51 N VAL C 8 SHEET 4 C 5 VAL C 79 THR C 83 1 O VAL C 80 N ILE C 50 SHEET 5 C 5 ASP C 101 THR C 104 1 O ILE C 103 N MET C 81
LINK OD1 ASP A 53 BE BEF A 201 1555 1555 1.70 LINK MG MG A 302 OD2 ASP A 53 1555 1555 1.98 LINK MG MG A 302 OD1 ASP A 10 1555 1555 2.07 LINK MG MG A 302 O HOH A 303 1555 1555 2.18 LINK MG MG A 302 O MET A 55 1555 1555 2.04 LINK MG MG A 302 O HOH A 304 1555 1555 2.16 LINK MG MG A 302 F1 BEF A 201 1555 1555 2.17 LINK OD1 ASP B 53 BE BEF B 202 1555 1555 1.63 LINK MG MG B 303 OD2 ASP B 53 1555 1555 2.09 LINK MG MG B 303 F1 BEF B 202 1555 1555 2.05 LINK MG MG B 303 O HOH B 304 1555 1555 2.07 LINK MG MG B 303 O MET B 55 1555 1555 2.15 LINK MG MG B 303 O HOH B 307 1555 1555 2.02 LINK MG MG B 303 OD1 ASP B 10 1555 1555 2.04 LINK OD1 ASP C 53 BE BEF C 203 1555 1555 1.75 LINK F1 BEF C 203 MG MG C 301 1555 1555 2.02 LINK MG MG C 301 OD1 ASP C 10 1555 1555 2.12 LINK MG MG C 301 O HOH C 309 1555 1555 2.04 LINK MG MG C 301 O MET C 55 1555 1555 2.23 LINK MG MG C 301 O HOH C 315 1555 1555 1.98 LINK MG MG C 301 OD2 ASP C 53 1555 1555 2.19
CISPEP 1 GLU A 44 PRO A 45 0 -3.22 CISPEP 2 LYS A 105 PRO A 106 0 -5.22 CISPEP 3 LYS B 105 PRO B 106 0 -1.96 CISPEP 4 GLU C 44 PRO C 45 0 -7.25 CISPEP 5 LYS C 105 PRO C 106 0 5.23
SITE 1 AC1 6 ASP C 10 ASP C 53 MET C 55 BEF C 203 SITE 2 AC1 6 HOH C 309 HOH C 315 SITE 1 AC2 6 ASP A 10 ASP A 53 MET A 55 BEF A 201 SITE 2 AC2 6 HOH A 303 HOH A 304 SITE 1 AC3 6 ASP B 10 ASP B 53 MET B 55 BEF B 202 SITE 2 AC3 6 HOH B 304 HOH B 307 SITE 1 AC4 10 ASP A 53 TRP A 54 MET A 55 THR A 83 SITE 2 AC4 10 ALA A 84 LYS A 105 MG A 302 HOH A 303 SITE 3 AC4 10 HOH A 304 HOH A 332 SITE 1 AC5 9 ASP B 53 TRP B 54 MET B 55 THR B 83 SITE 2 AC5 9 ALA B 84 LYS B 105 MG B 303 HOH B 304 SITE 3 AC5 9 HOH B 307 SITE 1 AC6 8 ASP C 53 TRP C 54 MET C 55 THR C 83 SITE 2 AC6 8 ALA C 84 LYS C 105 MG C 301 HOH C 309
CRYST1 77.869 77.869 109.071 90.00 90.00 90.00 P 43 21 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012842 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012842 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009168 0.00000