10 20 30 40 50 60 70 80 1ZDA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IGG BINDING DOMAIN 09-JUL-97 1ZDA
TITLE PHAGE-SELECTED MINI PROTEIN A DOMAIN, Z38, NMR, 24 TITLE 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINI PROTEIN A DOMAIN, Z38; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MINIMIZED, TWO-HELIX, IGG-BINDING VARIANT COMPND 6 OF PROTEIN A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630
KEYWDS IGG BINDING DOMAIN, PROTEIN A MIMIC
EXPDTA SOLUTION NMR
NUMMDL 24
AUTHOR M.A.STAROVASNIK
REVDAT 2 24-FEB-09 1ZDA 1 VERSN REVDAT 1 17-SEP-97 1ZDA 0
JRNL AUTH M.A.STAROVASNIK,A.C.BRAISTED,J.A.WELLS JRNL TITL STRUCTURAL MIMICRY OF A NATIVE PROTEIN BY A JRNL TITL 2 MINIMIZED BINDING DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 94 10080 1997 JRNL REFN ISSN 0027-8424 JRNL PMID 9294166 JRNL DOI 10.1073/PNAS.94.19.10080
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZDA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 281 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : IN H2O: NOESY, TOCSY, COSY; REMARK 210 IN D2O: NOESY, COSY-35, 2Q REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DGII, DISCOVER REMARK 210 METHOD USED : METRIX MATRIX DISTANCE REMARK 210 GEOMETRY FOLLOWED BY REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT VIOLATION REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 71.43 -155.40 REMARK 500 1 PHE A 6 32.44 -75.69 REMARK 500 1 ASN A 7 -51.74 -130.30 REMARK 500 1 GLN A 11 -49.03 -151.08 REMARK 500 1 GLU A 26 -51.22 -171.62 REMARK 500 1 SER A 34 -48.63 -165.98 REMARK 500 2 SER A 5 75.40 -152.10 REMARK 500 2 ASN A 7 -90.96 -0.80 REMARK 500 3 GLN A 4 -79.30 -131.72 REMARK 500 3 SER A 5 65.64 -152.49 REMARK 500 3 ASN A 7 -87.34 -102.71 REMARK 500 3 GLN A 9 -61.15 -173.17 REMARK 500 3 GLN A 11 -58.86 -154.45 REMARK 500 4 HIS A 19 55.08 -96.67 REMARK 500 4 SER A 34 -46.32 -168.86 REMARK 500 5 GLN A 4 -62.15 70.15 REMARK 500 5 GLU A 26 -60.92 -147.17 REMARK 500 6 VAL A 2 70.25 58.52 REMARK 500 6 GLN A 11 -56.91 -163.54 REMARK 500 6 ARG A 12 -77.98 -72.39 REMARK 500 6 GLU A 26 -47.27 -148.20 REMARK 500 7 VAL A 2 49.12 -82.33 REMARK 500 7 ASN A 7 -40.71 -179.19 REMARK 500 7 GLU A 16 -50.33 -175.57 REMARK 500 7 LEU A 23 -126.95 -140.50 REMARK 500 7 ASN A 24 23.58 -155.07 REMARK 500 7 GLU A 25 -54.28 74.17 REMARK 500 8 MET A 8 -60.64 -143.91 REMARK 500 8 ASN A 22 84.61 -162.96 REMARK 500 8 ASP A 37 43.59 -85.67 REMARK 500 9 SER A 5 -98.71 -151.93 REMARK 500 9 GLU A 25 -55.98 71.46 REMARK 500 10 ALA A 3 -67.57 -152.02 REMARK 500 10 MET A 8 -52.75 -149.21 REMARK 500 10 GLU A 25 164.94 69.88 REMARK 500 10 GLU A 26 -64.01 71.80 REMARK 500 11 GLN A 4 57.96 -153.52 REMARK 500 11 GLN A 9 -57.90 177.55 REMARK 500 11 ASP A 20 78.02 -156.51 REMARK 500 11 ASN A 22 -30.90 -154.47 REMARK 500 11 GLU A 26 -52.59 -152.07 REMARK 500 12 ALA A 3 -68.26 -165.33 REMARK 500 12 ASN A 7 66.11 -61.84 REMARK 500 12 MET A 8 -45.88 -179.39 REMARK 500 12 GLU A 16 -55.93 -178.56 REMARK 500 12 ASN A 22 25.91 -157.53 REMARK 500 12 ASP A 37 72.39 -65.48 REMARK 500 13 VAL A 2 -158.27 -85.63 REMARK 500 13 GLN A 4 -65.82 -95.81 REMARK 500 13 SER A 5 -123.27 -100.31 REMARK 500 13 ASN A 7 -62.96 -18.99 REMARK 500 13 ASN A 24 48.08 -83.59 REMARK 500 13 GLU A 25 -64.02 70.81 REMARK 500 14 MET A 8 -55.08 -177.76 REMARK 500 14 HIS A 19 49.52 -93.84 REMARK 500 14 ASN A 22 70.32 -167.73 REMARK 500 14 GLU A 25 -44.92 71.58 REMARK 500 14 ILE A 35 -61.50 -107.85 REMARK 500 15 SER A 5 55.92 -162.03 REMARK 500 15 PHE A 6 -58.15 -158.42 REMARK 500 15 MET A 8 -56.69 -169.83 REMARK 500 15 ARG A 12 -72.86 -56.34 REMARK 500 15 ASP A 37 76.30 -61.68 REMARK 500 16 SER A 5 53.19 -158.49 REMARK 500 16 ASN A 24 12.53 -153.79 REMARK 500 16 GLU A 25 -47.50 67.02 REMARK 500 17 SER A 5 -118.18 -147.00 REMARK 500 17 ASN A 7 -65.26 -153.05 REMARK 500 17 ASN A 24 33.67 -157.58 REMARK 500 17 GLU A 25 -57.39 72.33 REMARK 500 17 ARG A 28 -73.82 -51.44 REMARK 500 18 VAL A 2 -116.70 40.83 REMARK 500 18 GLN A 4 -69.06 70.38 REMARK 500 18 PHE A 6 30.96 -146.19 REMARK 500 18 ASN A 7 -68.48 -132.92 REMARK 500 18 GLU A 16 -55.03 178.94 REMARK 500 18 ASN A 22 -58.62 -155.72 REMARK 500 19 ALA A 3 -88.02 -79.44 REMARK 500 19 SER A 5 -147.95 -91.16 REMARK 500 19 PHE A 6 96.54 -68.84 REMARK 500 19 GLN A 9 -48.21 176.42 REMARK 500 19 GLU A 25 -58.37 76.34 REMARK 500 20 ASN A 7 -49.39 -136.14 REMARK 500 20 GLU A 25 157.59 70.76 REMARK 500 20 GLU A 26 -56.13 73.80 REMARK 500 21 GLN A 4 97.56 -68.89 REMARK 500 21 SER A 5 57.41 -102.03 REMARK 500 21 GLN A 11 -52.78 -165.17 REMARK 500 22 ALA A 3 79.48 -158.68 REMARK 500 22 GLN A 4 52.23 -147.79 REMARK 500 22 SER A 5 -96.63 -82.71 REMARK 500 22 PRO A 21 42.20 -67.50 REMARK 500 22 ASN A 22 92.89 61.16 REMARK 500 23 VAL A 2 76.27 59.13 REMARK 500 23 GLN A 4 40.80 -81.81 REMARK 500 23 PHE A 6 28.68 -74.60 REMARK 500 23 ASN A 7 -53.89 -144.43 REMARK 500 23 GLN A 11 -51.21 -149.51 REMARK 500 23 ARG A 12 -79.59 -70.11 REMARK 500 23 HIS A 19 48.82 -84.97 REMARK 500 23 ASN A 24 26.35 -75.90 REMARK 500 23 GLU A 25 -55.61 73.01 REMARK 500 24 SER A 5 -70.00 -76.82 REMARK 500 24 PHE A 6 20.67 -163.16 REMARK 500 24 GLN A 9 44.89 -89.98 REMARK 500 24 GLN A 10 -46.23 -158.43 REMARK 500 24 ASN A 22 107.09 66.26 REMARK 500 24 ASN A 24 21.39 -159.09 REMARK 500 24 GLU A 25 -52.66 73.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 PHE A 14 0.11 SIDE_CHAIN REMARK 500 13 PHE A 14 0.10 SIDE_CHAIN REMARK 500 15 PHE A 14 0.14 SIDE_CHAIN REMARK 500 22 PHE A 14 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZDB RELATED DB: PDB
DBREF 1ZDA A 1 38 PDB 1ZDA 1ZDA 1 38
SEQRES 1 A 38 ALA VAL ALA GLN SER PHE ASN MET GLN GLN GLN ARG ARG SEQRES 2 A 38 PHE TYR GLU ALA LEU HIS ASP PRO ASN LEU ASN GLU GLU SEQRES 3 A 38 GLN ARG ASN ALA LYS ILE LYS SER ILE ARG ASP ASP
HELIX 1 H1 MET A 8 LEU A 18 1 11 HELIX 2 H2 GLU A 25 ASP A 38 1 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000