10 20 30 40 50 60 70 80 1ZBN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN/RNA 08-APR-05 1ZBN
TITLE SOLUTION STRUCTURE OF BIV TAR HAIRPIN COMPLEXED TO JDV TAT TITLE 2 ARGININE-RICH MOTIF
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIV MRNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: A4G, U31C; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: JDV TAT PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: ARGININE-RICH DOMAIN; COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN BOVINE SOURCE 4 IMMUNODEFICIENCY VIRUS (BIV).; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN JEMBRANA SOURCE 8 DISEASE VIRUS (JDV).
KEYWDS RNA-PEPTIDE COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR V.CALABRO,M.D.DAUGHERTY,A.D.FRANKEL
REVDAT 3 24-FEB-09 1ZBN 1 VERSN REVDAT 2 10-MAY-05 1ZBN 1 JRNL REVDAT 1 19-APR-05 1ZBN 0
JRNL AUTH V.CALABRO,M.D.DAUGHERTY,A.D.FRANKEL JRNL TITL A SINGLE INTERMOLECULAR CONTACT MEDIATES JRNL TITL 2 INTRAMOLECULAR STABILIZATION OF BOTH RNA AND JRNL TITL 3 PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 6849 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15857951 JRNL DOI 10.1073/PNAS.0409282102
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.SMITH,V.CALABRO,A.D.FRANKEL REMARK 1 TITL AN RNA-BINDING CHAMELEON REMARK 1 REF MOL.CELL V. 6 1067 2000 REMARK 1 REFN ISSN 1097-2765 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.D.PUGLISI,L.CHEN,S.BLANCHARD,A.D.FRANKEL REMARK 1 TITL SOLUTION STRUCTURE OF A BOVINE IMMUNODEFICIENCY REMARK 1 TITL 2 VIRUS TAT-TAR PEPTIDE-RNA COMPLEX REMARK 1 REF SCIENCE V. 270 1200 1995 REMARK 1 REFN ISSN 0036-8075
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED BEGINNING REMARK 3 WITH 1,000 RANDOM STRUCTURES AND INCREMENTALLY ADDING DISTANCE REMARK 3 CONSTRAINTS IN FOUR ITERATIONS. THE FINAL 30 STRUCTURES WITH REMARK 3 THE LOWEST NUMBER OF VIOLATIONS WERE SUBJECTED TO RMD. THE REMARK 3 STRUCTURES ARE BASED ON A TOTAL OF 700 DISTANCE CONSTRAINTS, REMARK 3 61 DIHEDRAL ANGLE RESTRAINTS.
REMARK 4 REMARK 4 1ZBN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032536.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290; 285; 300 REMARK 210 PH : 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50MM NACL, 10MM SODIUM REMARK 210 PHOSPHATE; 50MM NACL, 10MM REMARK 210 SODIUM PHOSPHATE; 50MM NACL, REMARK 210 10MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM RNA, 1.5MM PEPTIDE, 90% REMARK 210 H2O, 10% D2O; 1.5MM RNA, 1.5MM REMARK 210 PEPTIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.X, NMRPIPE NA, SPARKY REMARK 210 3 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG B 2 84.19 -58.29 REMARK 500 1 ARG B 3 -178.47 -177.04 REMARK 500 1 LYS B 5 100.77 28.66 REMARK 500 1 ARG B 6 -58.01 -163.60 REMARK 500 1 LYS B 11 43.30 -163.60 REMARK 500 1 LYS B 14 171.91 64.11 REMARK 500 1 HIS B 16 90.56 35.02 REMARK 500 2 ARG B 3 139.63 62.56 REMARK 500 2 LYS B 4 38.24 34.62 REMARK 500 2 ARG B 6 -51.55 -151.20 REMARK 500 2 LYS B 11 36.32 113.68 REMARK 500 2 LYS B 14 158.50 -36.27 REMARK 500 2 HIS B 16 80.61 -152.31 REMARK 500 3 ARG B 3 -174.33 179.96 REMARK 500 3 LYS B 5 -156.11 44.84 REMARK 500 3 ARG B 6 -62.54 76.17 REMARK 500 3 LYS B 11 38.24 105.95 REMARK 500 3 LYS B 14 168.63 47.31 REMARK 500 4 ARG B 2 153.49 72.56 REMARK 500 4 ARG B 3 179.01 94.65 REMARK 500 4 LYS B 5 114.75 24.50 REMARK 500 4 ARG B 6 -50.12 -178.43 REMARK 500 4 LYS B 11 45.68 -163.39 REMARK 500 4 LYS B 14 170.36 44.64 REMARK 500 4 HIS B 16 86.52 9.86 REMARK 500 5 ARG B 2 113.74 33.07 REMARK 500 5 ARG B 3 147.27 72.19 REMARK 500 5 ARG B 6 -49.79 -132.05 REMARK 500 5 LYS B 11 45.76 -166.25 REMARK 500 5 LYS B 14 169.63 45.42 REMARK 500 5 HIS B 16 86.11 11.64 REMARK 500 6 ARG B 2 126.54 50.95 REMARK 500 6 ARG B 3 132.35 70.59 REMARK 500 6 ARG B 6 -51.18 -176.64 REMARK 500 6 ARG B 9 30.13 -96.72 REMARK 500 6 LYS B 11 38.66 104.09 REMARK 500 6 LYS B 14 158.72 64.28 REMARK 500 6 HIS B 16 89.36 21.07 REMARK 500 7 ARG B 2 78.55 -9.16 REMARK 500 7 ARG B 3 106.74 173.19 REMARK 500 7 LYS B 4 40.47 38.22 REMARK 500 7 ARG B 6 -48.05 179.09 REMARK 500 7 LYS B 11 38.14 104.11 REMARK 500 7 LYS B 14 163.97 53.91 REMARK 500 7 HIS B 16 83.75 -158.46 REMARK 500 8 ARG B 3 -145.11 81.09 REMARK 500 8 LYS B 4 -44.45 -23.55 REMARK 500 8 LYS B 5 76.38 10.66 REMARK 500 8 ARG B 6 -54.64 -135.66 REMARK 500 8 LYS B 11 38.47 102.89 REMARK 500 8 LYS B 14 164.85 45.37 REMARK 500 8 ILE B 15 -59.68 -130.69 REMARK 500 8 HIS B 16 96.42 29.58 REMARK 500 9 ARG B 3 -175.31 83.25 REMARK 500 9 LYS B 5 -141.23 41.82 REMARK 500 9 ARG B 6 -68.36 67.13 REMARK 500 9 ARG B 9 30.10 -95.52 REMARK 500 9 LYS B 11 37.61 108.32 REMARK 500 9 LYS B 14 171.05 54.06 REMARK 500 9 ILE B 15 -59.12 -130.05 REMARK 500 9 HIS B 16 94.88 39.56 REMARK 500 10 ARG B 2 160.50 60.47 REMARK 500 10 ARG B 3 -174.35 82.90 REMARK 500 10 LYS B 5 -149.76 36.39 REMARK 500 10 ARG B 6 -43.61 75.07 REMARK 500 10 LYS B 11 43.49 -163.88 REMARK 500 10 LYS B 14 163.03 56.04 REMARK 500 10 ILE B 15 -70.48 -108.61 REMARK 500 10 HIS B 16 94.44 52.30 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BIV RELATED DB: PDB REMARK 900 THE SAME RNA COMPLEXED WITH BIV TAT (65-81) ARGININE-RICH REMARK 900 DOMAIN REMARK 900 RELATED ID: 1MNB RELATED DB: PDB REMARK 900 THE SAME RNA COMPLEXED WITH BIV TAT (68-81) ARGININE-RICH REMARK 900 DOMAIN
DBREF 1ZBN A 1 28 PDB 1ZBN 1ZBN 1 28 DBREF 1ZBN B 1 17 PDB 1ZBN 1ZBN 1 17
SEQRES 1 A 28 G G C U C G U G U A G C U SEQRES 2 A 28 C A U U A G C U C C G A G SEQRES 3 A 28 C C SEQRES 1 B 17 GLY ARG ARG LYS LYS ARG GLY THR ARG GLY LYS GLY ARG SEQRES 2 B 17 LYS ILE HIS TYR
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000