10 20 30 40 50 60 70 80 1ZAQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER BLOOD COAGULATION 09-SEP-95 1ZAQ
TITLE FOURTH EGF-LIKE DOMAIN OF THROMBOMODULIN, NMR, 12 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TM4; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PRIMARILY LUNG; SOURCE 6 TISSUE: BLOOD VESSEL; SOURCE 7 CELLULAR_LOCATION: CELL SURFACE
KEYWDS ANTICOAGULANT, FIBRINOGEN, NMR, PEPTIDE SYNTHESIS, PROTEIN KEYWDS 2 C, THROMBIN, BLOOD COAGULATION
EXPDTA SOLUTION NMR
NUMMDL 12
AUTHOR D.P.MEININGER,E.A.KOMIVES
REVDAT 2 24-FEB-09 1ZAQ 1 VERSN REVDAT 1 29-JAN-96 1ZAQ 0
JRNL AUTH D.P.MEININGER,M.J.HUNTER,E.A.KOMIVES JRNL TITL SYNTHESIS, ACTIVITY, AND PRELIMINARY STRUCTURE OF JRNL TITL 2 THE FOURTH EGF-LIKE DOMAIN OF THROMBOMODULIN JRNL REF PROTEIN SCI. V. 4 1683 1995 JRNL REFN ISSN 0961-8368 JRNL PMID 8528067
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DGII, X-PLOR REMARK 3 AUTHORS : HAVEL (DGII), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZAQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 84.01 -167.64 REMARK 500 1 ASP A 4 137.01 61.59 REMARK 500 1 PRO A 5 -76.91 -52.95 REMARK 500 1 PHE A 7 90.74 43.88 REMARK 500 1 ARG A 8 -63.69 164.42 REMARK 500 1 ASN A 10 102.83 54.88 REMARK 500 1 GLU A 12 18.08 -143.45 REMARK 500 1 TYR A 13 -91.01 -174.01 REMARK 500 1 PRO A 17 103.61 -39.10 REMARK 500 1 LEU A 18 76.04 66.73 REMARK 500 1 GLN A 20 -86.04 67.12 REMARK 500 1 SER A 22 -141.66 -142.06 REMARK 500 1 TYR A 23 68.57 -163.54 REMARK 500 1 LEU A 24 155.48 74.67 REMARK 500 1 CYS A 25 104.50 86.56 REMARK 500 1 VAL A 26 -163.65 -100.53 REMARK 500 1 CYS A 27 -86.27 -92.59 REMARK 500 1 ALA A 28 -143.93 173.75 REMARK 500 1 GLU A 29 -65.51 -99.00 REMARK 500 1 ILE A 34 151.57 -41.70 REMARK 500 1 GLU A 37 119.76 179.65 REMARK 500 1 MET A 43 122.93 61.53 REMARK 500 2 PRO A 2 -171.72 -67.48 REMARK 500 2 PHE A 7 -42.66 82.55 REMARK 500 2 ARG A 8 46.09 -109.14 REMARK 500 2 ALA A 9 164.89 162.55 REMARK 500 2 TYR A 13 -87.60 169.04 REMARK 500 2 CYS A 15 110.69 -166.42 REMARK 500 2 GLN A 16 73.84 -112.50 REMARK 500 2 PRO A 17 96.01 -54.64 REMARK 500 2 LEU A 18 89.37 161.44 REMARK 500 2 GLN A 20 -78.71 77.75 REMARK 500 2 THR A 21 31.73 -145.61 REMARK 500 2 SER A 22 -147.25 -156.90 REMARK 500 2 TYR A 23 -151.68 -103.61 REMARK 500 2 LEU A 24 155.14 161.97 REMARK 500 2 CYS A 27 -104.67 -75.09 REMARK 500 2 ALA A 28 -145.35 -155.05 REMARK 500 2 PHE A 31 140.73 60.81 REMARK 500 2 GLN A 42 -144.98 -86.98 REMARK 500 3 ASP A 4 76.30 -114.60 REMARK 500 3 PRO A 5 149.26 -39.37 REMARK 500 3 PHE A 7 -37.10 -140.38 REMARK 500 3 GLU A 12 -73.64 -105.05 REMARK 500 3 TYR A 13 -72.36 -95.13 REMARK 500 3 PRO A 17 93.62 -39.31 REMARK 500 3 LEU A 18 -2.03 -145.75 REMARK 500 3 ASN A 19 171.23 -45.29 REMARK 500 3 THR A 21 33.65 175.78 REMARK 500 3 SER A 22 15.81 -145.28 REMARK 500 3 TYR A 23 148.32 66.10 REMARK 500 3 VAL A 26 -146.59 -91.89 REMARK 500 3 CYS A 27 -74.60 -116.20 REMARK 500 3 ALA A 28 -143.82 176.39 REMARK 500 3 PHE A 31 -160.75 -109.47 REMARK 500 3 PRO A 33 126.10 -36.80 REMARK 500 3 ILE A 34 -169.78 -59.17 REMARK 500 3 HIS A 39 -30.73 160.30 REMARK 500 3 ARG A 40 -155.07 -117.25 REMARK 500 3 MET A 43 128.49 60.25 REMARK 500 4 VAL A 3 -55.15 -159.23 REMARK 500 4 PHE A 7 104.38 53.72 REMARK 500 4 ALA A 9 112.87 169.33 REMARK 500 4 GLU A 12 -88.66 -105.34 REMARK 500 4 CYS A 15 137.59 -179.66 REMARK 500 4 GLN A 16 72.49 -112.78 REMARK 500 4 PRO A 17 101.68 -55.41 REMARK 500 4 LEU A 18 89.59 164.08 REMARK 500 4 GLN A 20 -73.12 80.24 REMARK 500 4 THR A 21 35.13 -143.26 REMARK 500 4 SER A 22 -146.42 -156.99 REMARK 500 4 TYR A 23 -156.34 -120.04 REMARK 500 4 LEU A 24 107.00 166.08 REMARK 500 4 VAL A 26 -151.84 -112.97 REMARK 500 4 CYS A 27 -139.69 -93.66 REMARK 500 4 ALA A 28 -140.29 -124.31 REMARK 500 4 PHE A 31 136.46 60.51 REMARK 500 4 ILE A 34 -178.25 -51.09 REMARK 500 4 HIS A 39 -24.36 161.30 REMARK 500 4 MET A 43 100.80 37.14 REMARK 500 5 PRO A 2 93.45 -66.03 REMARK 500 5 VAL A 3 20.16 -143.26 REMARK 500 5 PRO A 5 -81.01 -49.50 REMARK 500 5 ALA A 9 32.40 -160.40 REMARK 500 5 ASN A 10 93.20 43.43 REMARK 500 5 CYS A 11 -169.54 -112.73 REMARK 500 5 GLU A 12 30.40 -157.37 REMARK 500 5 TYR A 13 -92.67 175.14 REMARK 500 5 PRO A 17 98.78 -56.00 REMARK 500 5 LEU A 18 88.07 164.04 REMARK 500 5 GLN A 20 -87.71 60.92 REMARK 500 5 THR A 21 44.29 -140.17 REMARK 500 5 SER A 22 -147.98 -164.41 REMARK 500 5 TYR A 23 -158.52 -109.66 REMARK 500 5 LEU A 24 124.69 161.94 REMARK 500 5 CYS A 27 -78.69 -65.67 REMARK 500 5 ALA A 28 -145.65 -167.65 REMARK 500 5 PHE A 31 131.46 59.46 REMARK 500 5 HIS A 39 -18.97 159.40 REMARK 500 5 GLN A 42 -145.57 -101.73 REMARK 500 5 MET A 43 69.32 -109.33 REMARK 500 6 PRO A 2 100.93 -49.13 REMARK 500 6 PHE A 7 69.99 65.88 REMARK 500 6 ARG A 8 -34.11 169.52 REMARK 500 6 ASN A 10 85.39 -69.50 REMARK 500 6 TYR A 13 -134.86 -165.57 REMARK 500 6 GLN A 16 61.07 -115.60 REMARK 500 6 LEU A 18 87.13 162.91 REMARK 500 6 ASN A 19 -144.37 -152.10 REMARK 500 6 THR A 21 28.56 -170.79 REMARK 500 6 SER A 22 21.55 -143.28 REMARK 500 6 TYR A 23 148.96 65.25 REMARK 500 6 VAL A 26 -165.37 -107.59 REMARK 500 6 CYS A 27 -65.27 -104.52 REMARK 500 6 ALA A 28 -145.67 177.67 REMARK 500 6 PHE A 31 -142.93 -126.69 REMARK 500 6 ALA A 32 89.73 -170.45 REMARK 500 6 HIS A 39 -32.92 -177.61 REMARK 500 6 GLN A 42 33.51 -141.66 REMARK 500 6 MET A 43 72.66 39.02 REMARK 500 7 ARG A 8 103.71 -53.83 REMARK 500 7 ALA A 9 83.02 79.97 REMARK 500 7 ASN A 10 92.58 -35.83 REMARK 500 7 TYR A 13 -88.10 172.75 REMARK 500 7 GLN A 16 57.17 -115.63 REMARK 500 7 PRO A 17 159.77 -40.96 REMARK 500 7 LEU A 18 73.89 61.63 REMARK 500 7 GLN A 20 -88.90 156.96 REMARK 500 7 SER A 22 -142.14 -167.32 REMARK 500 7 VAL A 26 -153.08 -104.42 REMARK 500 7 CYS A 27 -141.26 -112.20 REMARK 500 7 ALA A 28 -139.98 -112.16 REMARK 500 7 PHE A 31 131.12 61.24 REMARK 500 7 ILE A 34 158.90 -40.38 REMARK 500 7 HIS A 36 -34.05 -166.78 REMARK 500 7 HIS A 39 32.41 176.25 REMARK 500 7 ARG A 40 -40.33 -165.48 REMARK 500 7 CYS A 41 174.20 64.01 REMARK 500 7 MET A 43 99.63 49.22 REMARK 500 8 PRO A 2 49.82 -90.28 REMARK 500 8 VAL A 3 88.49 -155.32 REMARK 500 8 ARG A 8 -41.97 -142.12 REMARK 500 8 ASN A 10 76.83 -104.30 REMARK 500 8 TYR A 13 -82.11 178.14 REMARK 500 8 CYS A 15 91.64 -161.35 REMARK 500 8 GLN A 16 77.92 -111.06 REMARK 500 8 PRO A 17 171.87 -43.22 REMARK 500 8 LEU A 18 87.58 92.44 REMARK 500 8 GLN A 20 -29.21 -38.19 REMARK 500 8 THR A 21 33.09 170.16 REMARK 500 8 SER A 22 27.53 -163.92 REMARK 500 8 TYR A 23 142.75 60.85 REMARK 500 8 VAL A 26 -134.48 -73.70 REMARK 500 8 CYS A 27 -69.86 -135.67 REMARK 500 8 ALA A 28 -138.28 178.73 REMARK 500 8 PHE A 31 -144.81 -133.89 REMARK 500 8 ALA A 32 88.07 -150.08 REMARK 500 8 ILE A 34 168.99 -44.65 REMARK 500 8 GLU A 37 130.20 163.38 REMARK 500 8 PRO A 38 172.27 -57.01 REMARK 500 8 HIS A 39 -2.10 104.03 REMARK 500 8 ARG A 40 -45.30 -132.70 REMARK 500 8 CYS A 41 176.21 57.76 REMARK 500 8 GLN A 42 27.60 -159.39 REMARK 500 8 MET A 43 117.98 61.74 REMARK 500 9 VAL A 3 -83.61 -142.66 REMARK 500 9 ASP A 4 132.92 61.24 REMARK 500 9 PRO A 5 -75.08 -40.14 REMARK 500 9 PHE A 7 76.33 44.71 REMARK 500 9 ARG A 8 -47.92 173.60 REMARK 500 9 TYR A 13 -82.53 -98.23 REMARK 500 9 GLN A 16 46.50 -151.59 REMARK 500 9 PRO A 17 161.64 -38.14 REMARK 500 9 LEU A 18 76.26 64.82 REMARK 500 9 GLN A 20 -74.09 79.30 REMARK 500 9 THR A 21 36.45 -149.74 REMARK 500 9 SER A 22 -141.95 -167.96 REMARK 500 9 VAL A 26 -143.86 -98.05 REMARK 500 9 CYS A 27 -47.49 -144.88 REMARK 500 9 ALA A 28 -158.38 167.15 REMARK 500 9 PHE A 31 -159.57 -107.94 REMARK 500 9 PRO A 33 97.69 -40.79 REMARK 500 9 ILE A 34 166.26 -46.34 REMARK 500 9 GLU A 37 126.19 177.84 REMARK 500 9 HIS A 39 1.71 105.21 REMARK 500 9 MET A 43 103.50 49.48 REMARK 500 10 VAL A 3 69.31 -170.48 REMARK 500 10 PHE A 7 128.04 63.92 REMARK 500 10 TYR A 13 -134.68 -172.44 REMARK 500 10 CYS A 15 140.91 173.73 REMARK 500 10 PRO A 17 85.80 -59.84 REMARK 500 10 LEU A 18 -59.73 -174.42 REMARK 500 10 ASN A 19 -144.89 33.99 REMARK 500 10 GLN A 20 -82.55 -54.13 REMARK 500 10 SER A 22 -132.65 -173.11 REMARK 500 10 VAL A 26 -161.07 -100.14 REMARK 500 10 CYS A 27 -94.57 -116.02 REMARK 500 10 ALA A 28 -141.40 -168.87 REMARK 500 10 PHE A 31 -141.97 -110.12 REMARK 500 10 ILE A 34 -177.44 -50.69 REMARK 500 10 GLU A 37 133.97 157.61 REMARK 500 10 PRO A 38 177.86 -50.28 REMARK 500 10 HIS A 39 30.02 93.77 REMARK 500 10 ARG A 40 -64.37 -167.80 REMARK 500 10 CYS A 41 163.82 64.54 REMARK 500 10 GLN A 42 -139.50 -123.27 REMARK 500 11 VAL A 3 71.70 55.16 REMARK 500 11 PHE A 7 -47.82 83.77 REMARK 500 11 ALA A 9 140.67 176.11 REMARK 500 11 GLU A 12 -73.54 -95.15 REMARK 500 11 TYR A 13 -50.62 -120.96 REMARK 500 11 GLN A 14 -157.27 -75.06 REMARK 500 11 CYS A 15 100.49 168.08 REMARK 500 11 PRO A 17 167.02 -41.54 REMARK 500 11 LEU A 18 87.71 88.04 REMARK 500 11 ASN A 19 -146.34 -113.68 REMARK 500 11 THR A 21 52.11 -140.12 REMARK 500 11 SER A 22 -157.42 -171.42 REMARK 500 11 TYR A 23 -144.57 -94.21 REMARK 500 11 LEU A 24 -159.88 174.18 REMARK 500 11 CYS A 25 161.20 153.46 REMARK 500 11 VAL A 26 -163.15 -114.82 REMARK 500 11 CYS A 27 -88.77 -100.93 REMARK 500 11 ALA A 28 -143.19 -172.60 REMARK 500 11 PHE A 31 -141.54 -113.59 REMARK 500 11 ALA A 32 77.62 -119.03 REMARK 500 11 PRO A 33 105.72 -42.59 REMARK 500 11 HIS A 39 -24.65 158.47 REMARK 500 11 MET A 43 91.16 -40.70 REMARK 500 12 VAL A 3 62.65 -161.56 REMARK 500 12 CYS A 6 45.63 -92.71 REMARK 500 12 ALA A 9 31.34 -153.16 REMARK 500 12 ASN A 10 94.34 53.96 REMARK 500 12 GLU A 12 24.97 -159.98 REMARK 500 12 TYR A 13 -124.51 179.07 REMARK 500 12 PRO A 17 96.93 -57.15 REMARK 500 12 LEU A 18 88.31 165.40 REMARK 500 12 GLN A 20 -42.14 82.83 REMARK 500 12 THR A 21 28.92 -159.70 REMARK 500 12 SER A 22 -147.71 -165.08 REMARK 500 12 TYR A 23 -164.97 -114.43 REMARK 500 12 LEU A 24 83.59 173.87 REMARK 500 12 VAL A 26 -148.76 -113.93 REMARK 500 12 CYS A 27 -59.95 -133.07 REMARK 500 12 ALA A 28 -141.08 -174.80 REMARK 500 12 PHE A 31 -147.14 -98.87 REMARK 500 12 HIS A 36 13.58 -149.09 REMARK 500 12 MET A 43 88.06 -51.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.30 SIDE_CHAIN REMARK 500 1 ARG A 40 0.30 SIDE_CHAIN REMARK 500 2 ARG A 8 0.26 SIDE_CHAIN REMARK 500 2 ARG A 40 0.27 SIDE_CHAIN REMARK 500 3 ARG A 8 0.23 SIDE_CHAIN REMARK 500 3 ARG A 40 0.28 SIDE_CHAIN REMARK 500 4 ARG A 40 0.29 SIDE_CHAIN REMARK 500 5 ARG A 8 0.31 SIDE_CHAIN REMARK 500 5 ARG A 40 0.21 SIDE_CHAIN REMARK 500 6 ARG A 8 0.11 SIDE_CHAIN REMARK 500 6 ARG A 40 0.23 SIDE_CHAIN REMARK 500 7 ARG A 8 0.30 SIDE_CHAIN REMARK 500 7 ARG A 40 0.14 SIDE_CHAIN REMARK 500 8 ARG A 8 0.31 SIDE_CHAIN REMARK 500 8 ARG A 40 0.31 SIDE_CHAIN REMARK 500 9 ARG A 8 0.21 SIDE_CHAIN REMARK 500 9 ARG A 40 0.31 SIDE_CHAIN REMARK 500 10 ARG A 8 0.22 SIDE_CHAIN REMARK 500 10 ARG A 40 0.27 SIDE_CHAIN REMARK 500 11 ARG A 8 0.28 SIDE_CHAIN REMARK 500 11 ARG A 40 0.32 SIDE_CHAIN REMARK 500 12 ARG A 8 0.14 SIDE_CHAIN REMARK 500 12 ARG A 40 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1ZAQ A 1 44 UNP P07204 TRBM_HUMAN 364 407
SEQRES 1 A 44 GLU PRO VAL ASP PRO CYS PHE ARG ALA ASN CYS GLU TYR SEQRES 2 A 44 GLN CYS GLN PRO LEU ASN GLN THR SER TYR LEU CYS VAL SEQRES 3 A 44 CYS ALA GLU GLY PHE ALA PRO ILE PRO HIS GLU PRO HIS SEQRES 4 A 44 ARG CYS GLN MET PHE
SSBOND 1 CYS A 6 CYS A 15 1555 1555 2.02 SSBOND 2 CYS A 11 CYS A 25 1555 1555 2.02 SSBOND 3 CYS A 27 CYS A 41 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000