10 20 30 40 50 60 70 80 1ZA8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIVIRAL PROTEIN 05-APR-05 1ZA8
TITLE NMR SOLUTION STRUCTURE OF A LEAF-SPECIFIC-EXPRESSED TITLE 2 CYCLOTIDE VHL-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHL-1; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIOLA HEDERACEA; SOURCE 3 ORGANISM_TAXID: 180952
KEYWDS CIRCULAR PROTEIN, CYCLIC CYSTINE KNOT MOTIF, ANTIVIRAL KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.CHEN,M.L.COLGRAVE,N.L.DALY,K.J.ROSENGREN,K.R.GUSTAFSON, AUTHOR 2 D.J.CRAIK
REVDAT 3 24-FEB-09 1ZA8 1 VERSN REVDAT 2 21-JUN-05 1ZA8 1 JRNL REVDAT 1 12-APR-05 1ZA8 0
JRNL AUTH B.CHEN,M.L.COLGRAVE,N.L.DALY,K.J.ROSENGREN, JRNL AUTH 2 K.R.GUSTAFSON,D.J.CRAIK JRNL TITL ISOLATION AND CHARACTERIZATION OF NOVEL CYCLOTIDES JRNL TITL 2 FROM VIOLA HEDERACEAE: SOLUTION STRUCTURE AND JRNL TITL 3 ANTI-HIV ACTIVITY OF VHL-1, A LEAF-SPECIFIC JRNL TITL 4 EXPRESSED CYCLOTIDE. JRNL REF J.BIOL.CHEM. V. 280 22395 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15824119 JRNL DOI 10.1074/JBC.M501737200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ZA8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB032493.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM VHL-1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3.110, REMARK 210 DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 5 37.34 -94.59 REMARK 500 1 SER A 9 48.60 -75.79 REMARK 500 1 LYS A 23 -12.97 78.12 REMARK 500 2 CYS A 5 34.11 -92.44 REMARK 500 2 LYS A 23 -15.20 81.77 REMARK 500 3 CYS A 5 39.59 -92.78 REMARK 500 3 LYS A 23 -13.38 78.54 REMARK 500 3 SER A 29 -4.30 72.33 REMARK 500 4 CYS A 5 35.83 -91.26 REMARK 500 4 SER A 9 48.03 -75.41 REMARK 500 4 LYS A 23 -15.80 87.06 REMARK 500 4 SER A 29 -1.61 75.41 REMARK 500 5 CYS A 5 37.11 -96.19 REMARK 500 5 SER A 9 49.86 -76.45 REMARK 500 5 LYS A 23 -19.18 81.42 REMARK 500 5 SER A 29 -2.73 71.74 REMARK 500 6 CYS A 5 36.52 -98.05 REMARK 500 6 SER A 9 49.69 -77.43 REMARK 500 6 LYS A 23 -10.92 76.40 REMARK 500 6 SER A 29 -4.83 72.49 REMARK 500 7 SER A 9 49.04 -77.43 REMARK 500 7 LYS A 23 -11.70 79.85 REMARK 500 8 CYS A 5 37.56 -92.33 REMARK 500 8 SER A 9 48.69 -76.38 REMARK 500 8 LYS A 23 -19.35 84.95 REMARK 500 8 SER A 29 -6.59 72.92 REMARK 500 9 CYS A 5 36.90 -95.11 REMARK 500 9 LYS A 23 -16.79 79.51 REMARK 500 9 SER A 29 -8.52 73.63 REMARK 500 10 CYS A 5 37.97 -94.07 REMARK 500 10 SER A 9 47.99 -76.26 REMARK 500 10 LYS A 23 -15.83 80.30 REMARK 500 10 SER A 29 -0.07 72.92 REMARK 500 11 CYS A 5 35.50 -91.92 REMARK 500 11 LYS A 23 -12.10 77.50 REMARK 500 11 SER A 29 -1.98 74.70 REMARK 500 12 CYS A 5 37.02 -90.26 REMARK 500 12 SER A 9 47.55 -75.65 REMARK 500 12 LYS A 23 -16.32 81.42 REMARK 500 13 CYS A 5 37.26 -89.99 REMARK 500 13 LYS A 23 -10.93 76.89 REMARK 500 13 SER A 29 -6.14 73.79 REMARK 500 14 CYS A 5 36.10 -91.74 REMARK 500 14 LYS A 23 -11.67 77.75 REMARK 500 14 SER A 29 -7.95 72.00 REMARK 500 15 CYS A 5 37.58 -94.00 REMARK 500 15 SER A 9 49.94 -76.24 REMARK 500 15 LYS A 23 -12.26 79.14 REMARK 500 15 SER A 29 -5.70 73.20 REMARK 500 16 CYS A 5 38.46 -98.34 REMARK 500 16 LYS A 23 -17.84 82.58 REMARK 500 16 SER A 29 -4.62 72.96 REMARK 500 17 CYS A 5 36.04 -92.37 REMARK 500 17 SER A 9 46.79 -74.89 REMARK 500 17 LYS A 23 -14.08 78.89 REMARK 500 17 SER A 29 -5.59 73.96 REMARK 500 18 CYS A 5 38.29 -94.61 REMARK 500 18 LYS A 23 -18.01 80.28 REMARK 500 19 CYS A 5 41.57 -94.00 REMARK 500 19 LYS A 23 -14.87 80.67 REMARK 500 19 SER A 29 -4.21 73.67 REMARK 500 20 CYS A 5 38.08 -91.36 REMARK 500 20 SER A 9 48.71 -75.25 REMARK 500 20 LYS A 23 -11.28 79.13 REMARK 500 20 SER A 29 -6.73 73.31 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1ZA8 A 1 28 UNP P84522 VHL1_VIOHE 4 31
SEQRES 1 A 31 CYS GLY GLU SER CYS ALA MET ILE SER PHE CYS PHE THR SEQRES 2 A 31 GLU VAL ILE GLY CYS SER CYS LYS ASN LYS VAL CYS TYR SEQRES 3 A 31 LEU ASN SER ILE SER
HELIX 1 1 CYS A 11 VAL A 15 5 5
SHEET 1 A 3 GLU A 3 SER A 4 0 SHEET 2 A 3 VAL A 24 TYR A 26 -1 O CYS A 25 N GLU A 3 SHEET 3 A 3 SER A 19 LYS A 21 -1 N SER A 19 O TYR A 26
SSBOND 1 CYS A 1 CYS A 18 1555 1555 2.03 SSBOND 2 CYS A 5 CYS A 20 1555 1555 2.03 SSBOND 3 CYS A 11 CYS A 25 1555 1555 2.02
LINK N CYS A 1 C SER A 31 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000