10 20 30 40 50 60 70 80 1Z8S - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 31-MAR-05 1Z8S
TITLE DNAB BINDING DOMAIN OF DNAG (P16) FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS (RESIDUES 452-597)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P16, RESIDUES 451-597; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: DNAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D
KEYWDS TWO ALPHA HELICAL SUB-DOMAINS, TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR K.SYSON,J.THIRLWAY,A.M.HOUNSLOW,P.SOULTANAS,J.P.WALTHO
REVDAT 2 24-FEB-09 1Z8S 1 VERSN REVDAT 1 04-OCT-05 1Z8S 0
JRNL AUTH K.SYSON,J.THIRLWAY,A.M.HOUNSLOW,P.SOULTANAS, JRNL AUTH 2 J.P.WALTHO JRNL TITL SOLUTION STRUCTURE OF THE HELICASE-INTERACTION JRNL TITL 2 DOMAIN OF THE PRIMASE DNAG: A MODEL FOR HELICASE JRNL TITL 3 ACTIVATION JRNL REF STRUCTURE V. 13 609 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15837199 JRNL DOI 10.1016/J.STR.2005.01.0220.1016
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TOTAL OF 1707 EXPERIMENTALLY REMARK 3 DETERMINED RESTRAINTS, 1439 NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 200 DIHEDRAL ANGLE RESTRAINTS, 68 HYDROGEN BOND DISTANCE REMARK 3 RESTRAINTS
REMARK 4 REMARK 4 1Z8S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB032441.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE, REMARK 210 200MM SODIUM CHLORIDE; 20MM REMARK 210 POTASSIUM PHOSPHATE, 200MM REMARK 210 SODIUM CHLORIDE; 20MM REMARK 210 POTASSIUM PHOSPHATE, 200MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM U-15N P16; 1MM U-15N U13C REMARK 210 P16; 0.5MM U-15N P16 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SIMULTANEOUSLY ACQUIRED 15N- REMARK 210 AND 13C-EDITED 3D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, FELIX 2000, CNS REMARK 210 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 FOLLOWED BY CARTESIAN SLOW- REMARK 210 COOL ANNEALING ENERGY REMARK 210 MINIMISATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 454 46.14 -105.34 REMARK 500 1 LEU A 456 -75.95 -61.13 REMARK 500 1 LEU A 457 79.62 -163.68 REMARK 500 1 ALA A 459 146.87 -177.88 REMARK 500 1 PHE A 460 48.36 -92.70 REMARK 500 1 ARG A 473 -62.39 -91.15 REMARK 500 1 ILE A 485 -51.28 -143.71 REMARK 500 1 ARG A 488 102.16 -175.80 REMARK 500 1 ASN A 490 47.44 -89.58 REMARK 500 1 GLU A 507 -71.04 -66.53 REMARK 500 1 GLU A 510 118.55 -166.60 REMARK 500 1 ALA A 511 73.04 -65.98 REMARK 500 1 SER A 518 45.07 -101.65 REMARK 500 1 LEU A 533 44.21 -175.06 REMARK 500 1 LEU A 535 58.32 -141.98 REMARK 500 1 VAL A 540 -12.90 74.13 REMARK 500 1 SER A 541 90.32 64.92 REMARK 500 1 PRO A 556 62.09 -67.37 REMARK 500 1 LYS A 575 170.49 72.55 REMARK 500 1 PHE A 577 -79.42 -110.16 REMARK 500 2 LEU A 456 -176.72 62.19 REMARK 500 2 LEU A 457 -52.86 -172.37 REMARK 500 2 PRO A 458 -152.83 -76.61 REMARK 500 2 PHE A 460 -82.17 -124.14 REMARK 500 2 MET A 472 -7.59 -49.46 REMARK 500 2 PHE A 489 -165.81 -62.55 REMARK 500 2 ASN A 490 -68.66 69.41 REMARK 500 2 HIS A 509 34.36 -169.61 REMARK 500 2 GLU A 510 156.52 60.75 REMARK 500 2 ARG A 519 -38.62 -140.98 REMARK 500 2 LEU A 533 49.24 -158.37 REMARK 500 2 LEU A 535 64.83 -153.48 REMARK 500 2 VAL A 540 159.71 68.07 REMARK 500 2 ASN A 554 -166.90 167.60 REMARK 500 2 PRO A 556 159.35 -39.74 REMARK 500 2 LYS A 575 169.72 75.94 REMARK 500 2 PHE A 577 -46.47 178.74 REMARK 500 2 THR A 579 145.20 -178.11 REMARK 500 2 SER A 595 -168.87 51.36 REMARK 500 3 PRO A 458 -170.24 -57.67 REMARK 500 3 ALA A 459 -75.80 -88.05 REMARK 500 3 PHE A 460 44.65 -97.80 REMARK 500 3 MET A 472 -6.26 -58.14 REMARK 500 3 ARG A 473 -69.33 -134.12 REMARK 500 3 ARG A 488 -66.93 -136.53 REMARK 500 3 PHE A 489 -89.41 -162.93 REMARK 500 3 ASN A 490 -163.09 43.45 REMARK 500 3 HIS A 509 12.58 -143.11 REMARK 500 3 ALA A 511 -58.24 69.44 REMARK 500 3 ASP A 512 90.28 65.38 REMARK 500 3 SER A 518 39.20 -89.29 REMARK 500 3 LEU A 533 53.20 -156.94 REMARK 500 3 LEU A 535 82.25 -176.49 REMARK 500 3 ASP A 538 33.06 -79.26 REMARK 500 3 ASP A 539 34.17 175.02 REMARK 500 3 VAL A 540 147.26 55.37 REMARK 500 3 ASN A 554 -68.45 179.73 REMARK 500 3 ARG A 555 -60.58 -166.28 REMARK 500 3 PRO A 556 158.09 -44.23 REMARK 500 3 LYS A 557 55.38 -92.68 REMARK 500 3 LYS A 575 151.78 78.66 REMARK 500 3 ASP A 576 -85.05 -123.43 REMARK 500 3 THR A 579 -178.56 64.39 REMARK 500 4 LEU A 456 81.68 -151.23 REMARK 500 4 LEU A 457 -65.42 -155.26 REMARK 500 4 PRO A 458 156.32 -46.33 REMARK 500 4 ALA A 459 -83.27 -107.46 REMARK 500 4 ARG A 473 -72.72 -117.65 REMARK 500 4 ARG A 488 -165.82 -122.04 REMARK 500 4 ASN A 490 -79.94 -121.93 REMARK 500 4 HIS A 509 33.06 -165.99 REMARK 500 4 GLU A 510 150.60 61.58 REMARK 500 4 ALA A 511 65.33 -69.82 REMARK 500 4 SER A 518 36.41 -87.30 REMARK 500 4 LEU A 533 45.92 -153.23 REMARK 500 4 LEU A 535 48.73 -178.65 REMARK 500 4 ILE A 536 -166.76 -115.04 REMARK 500 4 ASP A 539 20.14 -146.32 REMARK 500 4 VAL A 540 144.80 68.24 REMARK 500 4 ASN A 554 -166.17 -179.75 REMARK 500 4 ARG A 555 157.22 -46.74 REMARK 500 4 PRO A 556 -165.72 -62.84 REMARK 500 4 LYS A 557 -48.70 75.42 REMARK 500 4 LYS A 575 135.20 75.96 REMARK 500 4 PHE A 577 -81.47 62.06 REMARK 500 4 LEU A 578 -75.18 -97.51 REMARK 500 4 SER A 595 -58.76 -161.45 REMARK 500 4 SER A 596 99.17 70.02 REMARK 500 5 PHE A 460 42.18 -96.52 REMARK 500 5 MET A 472 -12.21 -41.26 REMARK 500 5 ARG A 473 25.41 -161.15 REMARK 500 5 HIS A 509 -45.03 169.88 REMARK 500 5 GLU A 510 -160.58 41.02 REMARK 500 5 ALA A 511 -166.70 63.10 REMARK 500 5 ASP A 512 92.41 67.85 REMARK 500 5 SER A 518 44.99 -84.41 REMARK 500 5 ARG A 519 15.48 -145.47 REMARK 500 5 LEU A 533 50.03 -154.27 REMARK 500 5 LEU A 535 60.50 -159.39 REMARK 500 5 VAL A 540 140.53 66.22 REMARK 500 5 ASN A 554 86.10 45.02 REMARK 500 5 PRO A 556 63.89 -65.65 REMARK 500 5 LYS A 575 113.60 64.86 REMARK 500 5 PHE A 577 -87.00 50.24 REMARK 500 5 LEU A 578 -70.91 -79.19 REMARK 500 5 THR A 579 -161.80 -174.21 REMARK 500 5 ALA A 580 -9.46 -57.50 REMARK 500 5 SER A 595 110.10 65.67 REMARK 500 5 SER A 596 -50.01 -160.12 REMARK 500 6 ALA A 459 158.53 59.11 REMARK 500 6 ARG A 473 -62.69 -104.31 REMARK 500 6 ILE A 485 -40.21 -144.90 REMARK 500 6 ASN A 490 -78.28 -169.24 REMARK 500 6 HIS A 509 -7.60 -141.12 REMARK 500 6 ALA A 511 99.10 52.51 REMARK 500 6 SER A 518 52.96 -96.81 REMARK 500 6 ARG A 519 -47.64 -135.15 REMARK 500 6 PRO A 521 -86.68 -31.09 REMARK 500 6 LEU A 533 55.04 -143.89 REMARK 500 6 LEU A 535 14.14 -170.77 REMARK 500 6 ASP A 538 -61.93 63.71 REMARK 500 6 VAL A 540 159.65 57.64 REMARK 500 6 ASN A 554 80.56 38.29 REMARK 500 6 ARG A 555 -65.05 170.47 REMARK 500 6 LYS A 575 -98.08 -117.51 REMARK 500 6 ASP A 576 164.64 53.72 REMARK 500 6 PHE A 577 -84.20 57.00 REMARK 500 6 SER A 596 -61.71 -132.40 REMARK 500 7 LEU A 456 104.12 61.94 REMARK 500 7 LEU A 457 -64.14 -161.66 REMARK 500 7 PRO A 458 178.10 -44.39 REMARK 500 7 ALA A 459 -80.28 -85.37 REMARK 500 7 ASN A 490 -167.20 -128.92 REMARK 500 7 ILE A 491 158.98 -47.63 REMARK 500 7 HIS A 509 -48.39 165.52 REMARK 500 7 GLU A 510 -166.40 41.64 REMARK 500 7 ALA A 511 -154.40 64.52 REMARK 500 7 ASP A 512 93.44 73.23 REMARK 500 7 SER A 518 47.67 -99.42 REMARK 500 7 ARG A 519 -42.43 -134.60 REMARK 500 7 PRO A 521 -82.54 -30.94 REMARK 500 7 LEU A 535 50.72 179.78 REMARK 500 7 ASP A 538 -60.65 64.22 REMARK 500 7 VAL A 540 157.87 58.24 REMARK 500 7 ASN A 554 88.59 20.65 REMARK 500 7 ARG A 555 -65.24 174.49 REMARK 500 7 ASP A 576 -94.47 159.22 REMARK 500 7 THR A 579 -42.84 -143.16 REMARK 500 7 SER A 595 -166.00 -107.06 REMARK 500 7 SER A 596 -60.04 -179.55 REMARK 500 8 LYS A 454 -75.81 64.59 REMARK 500 8 PHE A 460 48.06 -102.73 REMARK 500 8 ARG A 473 -64.05 -101.97 REMARK 500 8 ARG A 488 53.40 -178.43 REMARK 500 8 GLU A 507 -84.48 -129.34 REMARK 500 8 HIS A 509 79.46 -48.92 REMARK 500 8 GLU A 510 -135.93 7.69 REMARK 500 8 ALA A 511 -25.22 87.09 REMARK 500 8 SER A 518 40.67 -91.77 REMARK 500 8 LEU A 533 54.15 -151.87 REMARK 500 8 LEU A 535 49.39 -178.86 REMARK 500 8 ASP A 538 -58.13 66.77 REMARK 500 8 VAL A 540 27.42 44.18 REMARK 500 8 SER A 541 88.07 53.19 REMARK 500 8 ASN A 554 173.34 175.97 REMARK 500 8 PRO A 556 -86.00 -93.95 REMARK 500 8 LYS A 557 173.46 52.07 REMARK 500 8 LYS A 575 130.37 64.20 REMARK 500 8 ASP A 576 -166.17 -60.93 REMARK 500 8 LEU A 578 -75.54 -83.19 REMARK 500 8 SER A 595 -83.49 -147.32 REMARK 500 9 PRO A 458 -168.31 -75.09 REMARK 500 9 ALA A 459 -85.30 -135.43 REMARK 500 9 MET A 472 -15.99 -49.70 REMARK 500 9 ARG A 473 -72.20 -128.95 REMARK 500 9 ILE A 485 -41.98 -137.70 REMARK 500 9 ARG A 488 37.52 -178.40 REMARK 500 9 ASN A 490 62.37 64.13 REMARK 500 9 GLU A 507 -78.76 -92.80 REMARK 500 9 GLU A 510 167.28 51.95 REMARK 500 9 ALA A 511 -83.49 160.62 REMARK 500 9 ASP A 512 101.01 -44.46 REMARK 500 9 ILE A 520 99.50 -46.32 REMARK 500 9 LEU A 533 54.96 -156.05 REMARK 500 9 LEU A 535 46.41 -174.42 REMARK 500 9 ILE A 536 -168.78 -109.36 REMARK 500 9 VAL A 540 -169.59 77.94 REMARK 500 9 ARG A 555 72.90 -177.75 REMARK 500 9 LYS A 557 -87.92 170.00 REMARK 500 9 LYS A 575 97.47 54.05 REMARK 500 9 LEU A 578 -69.57 69.60 REMARK 500 9 THR A 579 -92.14 173.08 REMARK 500 10 LEU A 456 115.34 61.67 REMARK 500 10 PHE A 460 -69.57 -124.20 REMARK 500 10 ILE A 485 -46.96 -137.01 REMARK 500 10 ARG A 488 -52.89 -166.06 REMARK 500 10 HIS A 509 98.13 108.00 REMARK 500 10 GLU A 510 -39.55 86.04 REMARK 500 10 ALA A 511 179.94 157.41 REMARK 500 10 ASP A 512 117.64 -160.69 REMARK 500 10 ILE A 520 96.00 -38.52 REMARK 500 10 LEU A 533 43.96 -154.15 REMARK 500 10 LEU A 535 38.93 -165.65 REMARK 500 10 ILE A 536 -160.29 -108.89 REMARK 500 10 VAL A 540 -101.76 42.11 REMARK 500 10 SER A 541 100.49 153.87 REMARK 500 10 ASN A 554 77.10 65.93 REMARK 500 10 ARG A 555 91.14 -178.67 REMARK 500 10 PRO A 556 65.91 -67.05 REMARK 500 10 LYS A 557 -71.78 -159.26 REMARK 500 10 LYS A 575 98.14 25.53 REMARK 500 10 LEU A 578 -46.34 179.52 REMARK 500 10 SER A 595 93.35 68.07 REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO AUTHORS, RESIDUE 530 IN THE ACTUAL SEQUENCE REMARK 999 IS A GLU AND 531 IS A LEU. THE INITIAL SEQUENCE REMARK 999 SUBMITTED IN THE DATABASE FOR THESE RESIDUES IS INCORRECT.
DBREF 1Z8S A 452 597 UNP Q9X4D0 PRIM_BACST 451 597
SEQADV 1Z8S MET A 452 UNP Q9X4D0 LEU 452 ENGINEERED SEQADV 1Z8S GLU A 530 UNP Q9X4D0 ASP 530 SEE REMARK 999 SEQADV 1Z8S LEU A 531 UNP Q9X4D0 VAL 531 SEE REMARK 999
SEQRES 1 A 146 MET ALA LYS LYS LEU LEU PRO ALA PHE GLN ASN ALA GLU SEQRES 2 A 146 ARG LEU LEU LEU ALA HIS MET MET ARG SER ARG ASP VAL SEQRES 3 A 146 ALA LEU VAL VAL GLN GLU ARG ILE GLY GLY ARG PHE ASN SEQRES 4 A 146 ILE GLU GLU HIS ARG ALA LEU ALA ALA TYR ILE TYR ALA SEQRES 5 A 146 PHE TYR GLU GLU GLY HIS GLU ALA ASP PRO GLY ALA LEU SEQRES 6 A 146 ILE SER ARG ILE PRO GLY GLU LEU GLN PRO LEU ALA SER SEQRES 7 A 146 GLU LEU SER LEU LEU LEU ILE ALA ASP ASP VAL SER GLU SEQRES 8 A 146 GLN GLU LEU GLU ASP TYR ILE ARG HIS VAL LEU ASN ARG SEQRES 9 A 146 PRO LYS TRP LEU MET LEU LYS VAL LYS GLU GLN GLU LYS SEQRES 10 A 146 THR GLU ALA GLU ARG ARG LYS ASP PHE LEU THR ALA ALA SEQRES 11 A 146 ARG ILE ALA LYS GLU MET ILE GLU MET LYS LYS MET LEU SEQRES 12 A 146 SER SER SER
HELIX 1 1 PHE A 460 MET A 472 1 13 HELIX 2 2 SER A 474 ILE A 485 1 12 HELIX 3 3 ILE A 491 GLY A 508 1 18 HELIX 4 4 ASP A 512 ILE A 517 1 6 HELIX 5 5 SER A 518 ILE A 520 5 3 HELIX 6 6 GLU A 523 SER A 532 1 10 HELIX 7 7 SER A 541 ASN A 554 1 14 HELIX 8 8 LYS A 557 ARG A 574 1 18 HELIX 9 9 ALA A 580 SER A 595 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000