10 20 30 40 50 60 70 80 1Z6H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER BIOSYNTHETIC PROTEIN 22-MAR-05 1Z6H
TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILIS BLAP BIOTINYLATED- TITLE 2 FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN/LIPOYL ATTACHMENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21A(+)
KEYWDS BACILLUS SUBTILIS, SINGLE-DOMAIN BIOTIN/LIPOYL ATTACHMENT KEYWDS 2 PROTEIN, SOLUTION STRUCTURE, BIOSYNTHETIC PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.CUI,B.XIA
REVDAT 3 24-FEB-09 1Z6H 1 VERSN REVDAT 2 10-JUL-07 1Z6H 1 JRNL REVDAT 1 22-MAR-06 1Z6H 0
JRNL AUTH G.CUI,B.NAN,J.HU,Y.WANG,C.JIN,B.XIA JRNL TITL IDENTIFICATION AND SOLUTION STRUCTURES OF A SINGLE JRNL TITL 2 DOMAIN BIOTIN/LIPOYL ATTACHMENT PROTEIN FROM JRNL TITL 3 BACILLUS SUBTILIS JRNL REF J.BIOL.CHEM. V. 281 20598 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16699181 JRNL DOI 10.1074/JBC.M602660200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : DAVID CASE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 4560 RESTRAINTS, 4160 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 117 DIHEDRAL ANGLE RESTRAINTS, 30 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS, 253 CHARITY RESTRAINTS.
REMARK 4 REMARK 4 1Z6H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032358.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM S-BCCP U-15N,13C; 50MM REMARK 210 PHOSPHATE BUFFER NA; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2.1, REMARK 210 NMRVIEW 5, CYANA 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 35 7.20 90.66 REMARK 500 2 TRP A 12 -54.30 -24.86 REMARK 500 2 LYS A 35 8.48 84.36 REMARK 500 3 LYS A 35 7.19 88.62 REMARK 500 3 LEU A 65 -43.54 -137.31 REMARK 500 4 TRP A 12 -53.34 -29.30 REMARK 500 4 LYS A 35 6.36 86.66 REMARK 500 4 LEU A 65 -44.79 -130.06 REMARK 500 5 TRP A 12 -52.04 -29.57 REMARK 500 5 LYS A 35 7.28 85.11 REMARK 500 5 SER A 71 -38.27 -149.10 REMARK 500 6 LYS A 35 9.83 84.90 REMARK 500 6 LEU A 65 -42.86 -131.26 REMARK 500 7 LYS A 35 7.67 85.35 REMARK 500 7 LEU A 65 -43.17 -135.00 REMARK 500 8 LYS A 35 9.63 86.89 REMARK 500 8 LEU A 65 -42.57 -134.88 REMARK 500 9 LYS A 35 18.88 89.73 REMARK 500 9 LEU A 65 -38.52 -135.28 REMARK 500 10 LYS A 35 21.78 80.02 REMARK 500 10 LEU A 65 -42.70 -132.19 REMARK 500 11 LYS A 35 9.22 85.21 REMARK 500 11 LEU A 65 -40.17 -135.10 REMARK 500 12 TRP A 12 -52.93 -29.33 REMARK 500 12 LYS A 35 9.28 87.26 REMARK 500 12 LEU A 65 -42.41 -130.05 REMARK 500 12 ASN A 70 73.20 31.25 REMARK 500 13 TRP A 12 -51.49 -29.93 REMARK 500 13 LYS A 35 5.75 88.94 REMARK 500 13 LEU A 65 -42.18 -135.01 REMARK 500 14 LYS A 35 7.78 86.04 REMARK 500 14 LEU A 65 -44.60 -134.90 REMARK 500 15 LYS A 35 10.87 84.10 REMARK 500 15 LEU A 65 -41.80 -133.26 REMARK 500 15 ASN A 70 41.64 -147.38 REMARK 500 16 LYS A 35 7.11 91.27 REMARK 500 16 THR A 72 11.99 -142.11 REMARK 500 17 LYS A 35 12.36 87.69 REMARK 500 17 LEU A 65 -42.59 -135.07 REMARK 500 18 LYS A 35 6.57 85.42 REMARK 500 18 LEU A 65 -43.80 -135.77 REMARK 500 19 LEU A 65 -43.25 -134.76 REMARK 500 20 LYS A 35 15.18 86.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 31 GLU A 32 1 140.47 REMARK 500 LEU A 31 GLU A 32 2 135.16 REMARK 500 LEU A 31 GLU A 32 3 138.52 REMARK 500 LEU A 31 GLU A 32 4 136.94 REMARK 500 LEU A 31 GLU A 32 5 137.24 REMARK 500 LEU A 31 GLU A 32 6 138.72 REMARK 500 LEU A 31 GLU A 32 7 139.34 REMARK 500 LEU A 31 GLU A 32 8 138.23 REMARK 500 LEU A 31 GLU A 32 9 137.74 REMARK 500 LEU A 31 GLU A 32 10 140.97 REMARK 500 LEU A 31 GLU A 32 11 138.00 REMARK 500 LEU A 31 GLU A 32 12 137.46 REMARK 500 LEU A 31 GLU A 32 13 138.61 REMARK 500 LEU A 31 GLU A 32 14 136.67 REMARK 500 LEU A 31 GLU A 32 15 139.33 REMARK 500 LEU A 31 GLU A 32 16 136.01 REMARK 500 LEU A 31 GLU A 32 17 137.80 REMARK 500 LEU A 31 GLU A 32 18 138.37 REMARK 500 LEU A 31 GLU A 32 19 137.62 REMARK 500 LEU A 31 GLU A 32 20 139.05 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTI A 135
DBREF 1Z6H A 2 73 UNP Q9R9I3 Q9R9I3_BACSU 2 73
SEQRES 1 A 72 THR VAL SER ILE GLN MET ALA GLY ASN LEU TRP LYS VAL SEQRES 2 A 72 HIS VAL LYS ALA GLY ASP GLN ILE GLU LYS GLY GLN GLU SEQRES 3 A 72 VAL ALA ILE LEU GLU SER MET LYS MET GLU ILE PRO ILE SEQRES 4 A 72 VAL ALA ASP ARG SER GLY ILE VAL LYS GLU VAL LYS LYS SEQRES 5 A 72 LYS GLU GLY ASP PHE VAL ASN GLU GLY ASP VAL LEU LEU SEQRES 6 A 72 GLU LEU SER ASN SER THR GLN
HET BTI A 135 30
HETNAM BTI 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL) HETNAM 2 BTI PENTANAL
FORMUL 2 BTI C10 H16 N2 O2 S
HELIX 1 1 ASN A 70 THR A 72 5 3
SHEET 1 A 4 VAL A 3 SER A 4 0 SHEET 2 A 4 VAL A 64 LEU A 68 -1 O LEU A 65 N VAL A 3 SHEET 3 A 4 GLY A 46 VAL A 51 -1 N GLU A 50 O GLU A 67 SHEET 4 A 4 GLN A 21 ILE A 22 -1 N ILE A 22 O GLY A 46 SHEET 1 B 4 MET A 36 VAL A 41 0 SHEET 2 B 4 GLU A 27 SER A 33 -1 N LEU A 31 O ILE A 38 SHEET 3 B 4 GLY A 9 VAL A 14 -1 N ASN A 10 O GLU A 32 SHEET 4 B 4 PHE A 58 VAL A 59 -1 O VAL A 59 N GLY A 9
LINK C11 BTI A 135 NZ LYS A 35 1555 1555 1.34
SITE 1 AC1 2 TRP A 12 LYS A 35
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000