10 20 30 40 50 60 70 80 1Z31 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 10-MAR-05 1Z31
TITLE THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF HUMAN TITLE 2 TELOMERASE RNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN TELOMERASE PJ6 HAIRPIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN TELOMERASE RNA; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: T7 RNA POLYMERASE IN VITRO TRANSCRIPTION SOURCE 4 FROM DNA OLIGONUCLEOTIDE TEMPLATE
KEYWDS ASYMMETRIC INTERNAL BULGE, RESIDUAL DIPOLAR COUPLINGS, KEYWDS 2 TELOMERASE PROTEIN BINDING SITE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR T.C.LEEPER,G.VARANI
REVDAT 2 24-FEB-09 1Z31 1 VERSN REVDAT 1 22-MAR-05 1Z31 0
JRNL AUTH T.C.LEEPER,G.VARANI JRNL TITL THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF JRNL TITL 2 HUMAN TELOMERASE RNA. JRNL REF RNA V. 11 394 2005 JRNL REFN ISSN 1355-8382 JRNL PMID 15703438 JRNL DOI 10.1261/RNA.7222505
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.9.4 REMARK 3 AUTHORS : BRUNGER AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 726 TOTAL RESTRAINTS, 429 NOE- REMARK 3 DERIVED RESTRAINTS, 159 DIHEDRAL RESTRAINTS, 65 RESIDUAL REMARK 3 DIPOLAR COUPLING RESTRAINTS, 62 HYDROGEN BONDS, AND 11 WEAK REMARK 3 PLANARITY RESTRAINTS.
REMARK 4 REMARK 4 1Z31 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032234.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 277 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : 10 MM; 10 MM REMARK 210 PRESSURE : 1ATM; 1ATM REMARK 210 SAMPLE CONTENTS : PJ6 1 MM UNLABELED; 10 MM REMARK 210 SODIUM PHOSHATE, PH 6.0, 100% REMARK 210 D2O; PJ6 1 MM UNLABELED; 10 MM REMARK 210 SODIUM PHOSHATE, PH 6.0, 90% REMARK 210 H2O, 10% D2O; PJ6 0.6 MM U- REMARK 210 15N,13C; 10 MM SODIUM REMARK 210 PHOSHATE, PH 6.0, 100% D2O; REMARK 210 PJ6 0.6 MM U-15N,13C; 10 MM REMARK 210 SODIUM PHOSHATE, PH 6.0, 90% REMARK 210 H2O, 10% D2O; PJ6 0.6 MM U- REMARK 210 15N,13C; 10 MM SODIUM REMARK 210 SUCCINATE, PH 6.0, 18 MG/ML REMARK 210 PF1 BACTERIAPHAGE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY, 3D_13C- REMARK 210 SEPARATED_NOESY, IPAP-HSQC, REMARK 210 HCP TRIPLE RESONANCE, 3D 13C- REMARK 210 31P HETCOR, 3D 13C TOCSY-HSQC, REMARK 210 HNN-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.0, NMRPIPE 2.3, X- REMARK 210 PLOR 2.9.4, SPARKY 3.110 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1' C A 262 OP2 G A 263 2.03 REMARK 500 O2' C A 288 O4' A A 289 2.10 REMARK 500 O2' G A 257 O5' A A 258 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 C A 270 C4' C A 270 C3' -0.088 REMARK 500 2 C A 270 C4' C A 270 C3' -0.087 REMARK 500 3 C A 270 C4' C A 270 C3' -0.087 REMARK 500 4 C A 270 C4' C A 270 C3' -0.087 REMARK 500 5 C A 270 C4' C A 270 C3' -0.087 REMARK 500 7 C A 270 C4' C A 270 C3' -0.087 REMARK 500 8 C A 270 C4' C A 270 C3' -0.089 REMARK 500 9 C A 270 C4' C A 270 C3' -0.086 REMARK 500 10 C A 270 C4' C A 270 C3' -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 2 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 4 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.4 DEGREES REMARK 500 8 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.5 DEGREES REMARK 500 9 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.5 DEGREES REMARK 500 10 U A 272 C5' - C4' - C3' ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL
DBREF 1Z31 A 257 299 PDB 1Z31 1Z31 257 299
SEQRES 1 A 32 G A G G U C G G C C C G A SEQRES 2 A 32 C U U C G G U C A C U G C SEQRES 3 A 32 C A C C U C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000