10 20 30 40 50 60 70 80 1Z2E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 08-MAR-05 1Z2E
TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILIS ARSC IN OXIDIZED TITLE 2 STATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARSENATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARSENICAL PUMP MODIFIER; COMPND 5 EC: 1.20.4.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS BACILLUS SUBTILIS, ARSENATE REDUCTASE, SOLUTION STRUCTURE, KEYWDS 2 STRUCTURAL GENOMICS, OXIDOREDUCTASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.JIN,Y.LI
REVDAT 3 24-FEB-09 1Z2E 1 VERSN REVDAT 2 06-DEC-05 1Z2E 1 JRNL REVDAT 1 04-OCT-05 1Z2E 0
JRNL AUTH X.GUO,Y.LI,K.PENG,Y.HU,C.LI,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURES AND BACKBONE DYNAMICS OF JRNL TITL 2 ARSENATE REDUCTASE FROM BACILLUS SUBTILIS: JRNL TITL 3 REVERSIBLE CONFORMATIONAL SWITCH ASSOCIATED WITH JRNL TITL 4 ARSENATE REDUCTION JRNL REF J.BIOL.CHEM. V. 280 39601 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16192272 JRNL DOI 10.1074/JBC.M508132200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : DAVID CASE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1Z2E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032211.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.85 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4MM ARSC U-15N, 13C; 20MM REMARK 210 TRIS BUFFER; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2.1, REMARK 210 NMRVIEW 5, CYANA 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 TYR A 7 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 5 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 7 TYR A 7 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 8 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 9 TYR A 7 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 11 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 12 TYR A 7 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 12 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 13 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 17 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 19 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 15 -93.81 -134.33 REMARK 500 1 ASP A 30 8.45 58.69 REMARK 500 1 LYS A 33 97.30 -67.62 REMARK 500 1 ALA A 37 -166.31 -160.89 REMARK 500 1 CYS A 89 87.71 44.87 REMARK 500 2 CYS A 15 -87.12 -137.88 REMARK 500 2 ASP A 30 14.32 57.14 REMARK 500 2 LYS A 33 97.42 -67.54 REMARK 500 2 ALA A 37 -168.17 -161.34 REMARK 500 2 ASP A 87 44.23 37.53 REMARK 500 2 CYS A 89 86.07 42.86 REMARK 500 3 CYS A 15 -99.45 -126.49 REMARK 500 3 ASP A 30 5.80 57.56 REMARK 500 3 LYS A 33 97.86 -68.92 REMARK 500 3 CYS A 89 95.58 60.51 REMARK 500 4 CYS A 15 -105.81 -131.68 REMARK 500 4 ASP A 30 11.44 56.35 REMARK 500 4 LYS A 33 98.78 -67.67 REMARK 500 4 THR A 63 176.76 56.07 REMARK 500 4 CYS A 89 122.62 53.56 REMARK 500 4 TRP A 101 58.10 -119.90 REMARK 500 5 CYS A 15 -90.57 -136.30 REMARK 500 5 ASP A 30 6.24 59.21 REMARK 500 5 LYS A 33 97.62 -69.46 REMARK 500 5 ALA A 37 -166.85 -161.51 REMARK 500 5 THR A 63 -173.24 52.04 REMARK 500 5 CYS A 89 90.27 43.37 REMARK 500 5 ALA A 109 95.67 -58.71 REMARK 500 6 ASN A 13 45.72 -82.80 REMARK 500 6 CYS A 15 -106.22 -145.91 REMARK 500 6 ALA A 37 -168.04 -161.09 REMARK 500 6 ASP A 87 56.77 33.17 REMARK 500 6 CYS A 89 94.63 44.05 REMARK 500 6 TRP A 101 55.54 -116.40 REMARK 500 7 CYS A 15 -106.08 -128.86 REMARK 500 7 THR A 63 -175.68 51.20 REMARK 500 7 CYS A 89 112.19 37.32 REMARK 500 7 PHE A 103 -100.37 -136.69 REMARK 500 8 THR A 11 32.69 -77.97 REMARK 500 8 CYS A 15 -90.40 -138.81 REMARK 500 8 ASP A 87 28.83 46.44 REMARK 500 8 CYS A 89 109.88 54.69 REMARK 500 9 CYS A 15 -98.56 -137.98 REMARK 500 9 ASP A 30 16.06 56.12 REMARK 500 9 LYS A 33 94.25 -67.64 REMARK 500 9 CYS A 82 72.89 -68.65 REMARK 500 9 ASP A 87 55.39 34.64 REMARK 500 9 CYS A 89 84.80 42.51 REMARK 500 9 TRP A 101 59.67 -119.11 REMARK 500 10 CYS A 15 -90.93 -139.03 REMARK 500 10 LYS A 33 99.70 -67.64 REMARK 500 10 ALA A 37 -166.37 -160.05 REMARK 500 10 ASP A 87 48.45 37.65 REMARK 500 10 CYS A 89 85.39 34.49 REMARK 500 11 CYS A 15 -94.67 -133.02 REMARK 500 11 ASP A 30 11.60 58.88 REMARK 500 11 ALA A 37 -169.38 -162.96 REMARK 500 11 ASN A 61 7.26 -64.49 REMARK 500 11 CYS A 89 95.79 46.54 REMARK 500 11 ALA A 109 99.25 -59.35 REMARK 500 12 CYS A 15 -87.59 -128.72 REMARK 500 12 ASP A 30 9.61 57.78 REMARK 500 12 LYS A 33 97.54 -67.79 REMARK 500 12 ALA A 37 -167.45 -161.57 REMARK 500 12 CYS A 89 106.48 61.23 REMARK 500 12 ALA A 109 45.66 -75.62 REMARK 500 13 THR A 11 35.23 -76.08 REMARK 500 13 CYS A 15 -87.78 -137.10 REMARK 500 13 ASP A 30 13.73 55.47 REMARK 500 13 LYS A 33 89.35 -67.44 REMARK 500 13 CYS A 89 92.59 45.41 REMARK 500 14 CYS A 15 -96.99 -133.01 REMARK 500 14 ALA A 37 -166.55 -160.05 REMARK 500 14 ASP A 87 47.66 36.76 REMARK 500 14 CYS A 89 88.56 44.63 REMARK 500 15 CYS A 15 -101.98 -140.23 REMARK 500 15 ASP A 30 9.44 55.80 REMARK 500 15 LYS A 33 88.55 -68.70 REMARK 500 15 THR A 63 -164.71 49.01 REMARK 500 15 CYS A 89 88.51 35.96 REMARK 500 15 ALA A 109 93.24 -61.21 REMARK 500 16 CYS A 15 -88.39 -137.85 REMARK 500 16 ASP A 30 9.93 57.87 REMARK 500 16 ALA A 37 -167.31 -161.68 REMARK 500 16 CYS A 89 110.65 41.53 REMARK 500 17 THR A 11 35.81 -76.03 REMARK 500 17 CYS A 15 -89.61 -136.32 REMARK 500 17 ALA A 37 -166.64 -162.53 REMARK 500 17 CYS A 89 96.70 44.18 REMARK 500 18 GLU A 2 10.17 -141.89 REMARK 500 18 CYS A 15 -106.33 -131.84 REMARK 500 18 ALA A 37 -168.03 -163.16 REMARK 500 18 CYS A 89 123.29 76.50 REMARK 500 19 THR A 11 34.21 -76.82 REMARK 500 19 CYS A 15 -92.85 -136.32 REMARK 500 19 ALA A 37 -166.62 -163.41 REMARK 500 19 CYS A 89 94.36 47.32 REMARK 500 20 CYS A 15 -95.60 -138.38 REMARK 500 20 LYS A 33 97.29 -69.20 REMARK 500 20 ALA A 37 -166.97 -160.50 REMARK 500 20 CYS A 89 88.05 34.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 7 0.10 SIDE_CHAIN REMARK 500 1 ARG A 98 0.09 SIDE_CHAIN REMARK 500 1 ARG A 130 0.09 SIDE_CHAIN REMARK 500 2 TYR A 7 0.09 SIDE_CHAIN REMARK 500 3 TYR A 7 0.09 SIDE_CHAIN REMARK 500 3 ARG A 98 0.08 SIDE_CHAIN REMARK 500 4 TYR A 7 0.10 SIDE_CHAIN REMARK 500 5 TYR A 7 0.09 SIDE_CHAIN REMARK 500 5 ARG A 98 0.09 SIDE_CHAIN REMARK 500 6 TYR A 7 0.09 SIDE_CHAIN REMARK 500 7 TYR A 7 0.09 SIDE_CHAIN REMARK 500 8 TYR A 7 0.09 SIDE_CHAIN REMARK 500 8 ARG A 98 0.08 SIDE_CHAIN REMARK 500 9 TYR A 7 0.07 SIDE_CHAIN REMARK 500 10 TYR A 7 0.10 SIDE_CHAIN REMARK 500 11 TYR A 7 0.08 SIDE_CHAIN REMARK 500 11 ARG A 98 0.09 SIDE_CHAIN REMARK 500 12 TYR A 7 0.10 SIDE_CHAIN REMARK 500 12 ARG A 98 0.08 SIDE_CHAIN REMARK 500 12 ARG A 108 0.08 SIDE_CHAIN REMARK 500 13 TYR A 7 0.07 SIDE_CHAIN REMARK 500 13 ARG A 98 0.09 SIDE_CHAIN REMARK 500 14 TYR A 7 0.10 SIDE_CHAIN REMARK 500 14 ARG A 98 0.09 SIDE_CHAIN REMARK 500 15 TYR A 7 0.10 SIDE_CHAIN REMARK 500 15 ARG A 98 0.09 SIDE_CHAIN REMARK 500 15 ARG A 130 0.09 SIDE_CHAIN REMARK 500 16 TYR A 7 0.08 SIDE_CHAIN REMARK 500 16 ARG A 98 0.08 SIDE_CHAIN REMARK 500 17 TYR A 7 0.09 SIDE_CHAIN REMARK 500 17 ARG A 98 0.08 SIDE_CHAIN REMARK 500 18 TYR A 7 0.09 SIDE_CHAIN REMARK 500 19 TYR A 7 0.09 SIDE_CHAIN REMARK 500 19 ARG A 98 0.09 SIDE_CHAIN REMARK 500 20 TYR A 7 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JL3 RELATED DB: PDB REMARK 900 OXIDOREDUCTASE REMARK 900 RELATED ID: 1Z2D RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN REDUCED STATE
DBREF 1Z2E A 1 139 UNP P45947 ARSC_BACSU 1 139
SEQRES 1 A 139 MET GLU ASN LYS ILE ILE TYR PHE LEU CYS THR GLY ASN SEQRES 2 A 139 SER CYS ARG SER GLN MET ALA GLU GLY TRP ALA LYS GLN SEQRES 3 A 139 TYR LEU GLY ASP GLU TRP LYS VAL TYR SER ALA GLY ILE SEQRES 4 A 139 GLU ALA HIS GLY LEU ASN PRO ASN ALA VAL LYS ALA MET SEQRES 5 A 139 LYS GLU VAL GLY ILE ASP ILE SER ASN GLN THR SER ASP SEQRES 6 A 139 ILE ILE ASP SER ASP ILE LEU ASN ASN ALA ASP LEU VAL SEQRES 7 A 139 VAL THR LEU CYS GLY ASP ALA ALA ASP LYS CYS PRO MET SEQRES 8 A 139 THR PRO PRO HIS VAL LYS ARG GLU HIS TRP GLY PHE ASP SEQRES 9 A 139 ASP PRO ALA ARG ALA GLN GLY THR GLU GLU GLU LYS TRP SEQRES 10 A 139 ALA PHE PHE GLN ARG VAL ARG ASP GLU ILE GLY ASN ARG SEQRES 11 A 139 LEU LYS GLU PHE ALA GLU THR GLY LYS
HELIX 1 1 CYS A 15 LEU A 28 1 14 HELIX 2 2 ASN A 45 GLU A 54 1 10 HELIX 3 3 ASP A 68 ASN A 73 1 6 HELIX 4 4 ASP A 105 ALA A 109 5 5 HELIX 5 5 THR A 112 THR A 137 1 26
SHEET 1 A 4 TRP A 32 GLY A 38 0 SHEET 2 A 4 LYS A 4 CYS A 10 1 N LYS A 4 O LYS A 33 SHEET 3 A 4 LEU A 77 CYS A 82 1 O VAL A 79 N LEU A 9 SHEET 4 A 4 ARG A 98 PHE A 103 1 O TRP A 101 N THR A 80
SSBOND 1 CYS A 82 CYS A 89 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000