10 20 30 40 50 60 70 80 1Z1V - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE 06-MAR-05 1Z1V
TITLE NMR STRUCTURE OF THE SACCHAROMYCES CEREVISIAE STE50 SAM TITLE 2 DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: STE50 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: STE50 SAM DOMAIN (RESIDUES 32-107); COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STE50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 OTHER_DETAILS: THIS PROTEIN FRAGMENT WAS CLONED INTO THE SOURCE 12 NDEI AND BAMHI SITES OF PET15B CREATING AN AMINOTERMINAL SOURCE 13 HEXAHISTIDINE TAGGED PROTEIN WITH AN INTERVENING THROMBIN SOURCE 14 PROTEASE CLEAVAGE SITE. AFTER THROMBIN TREATMENT, THE NON- SOURCE 15 NATIVE RESIDUES GSH REMAINED AMINO TERMINAL TO THE NATIVE SOURCE 16 STE50 SEQUENCE
KEYWDS ALL HELIX PROTEIN, SAM DOMAIN, CELL CYCLE
EXPDTA SOLUTION NMR
AUTHOR J.J.KWAN,N.WARNER,J.MAINI,T.PAWSON,L.W.DONALDSON
REVDAT 2 24-FEB-09 1Z1V 1 VERSN REVDAT 1 14-FEB-06 1Z1V 0
JRNL AUTH J.J.KWAN,N.WARNER,J.MAINI,K.W.CHAN TUNG,H.ZAKARIA, JRNL AUTH 2 T.PAWSON,L.W.DONALDSON JRNL TITL SACCHAROMYCES CEREVISIAE STE50 BINDS THE MAPKKK JRNL TITL 2 STE11 THROUGH A HEAD-TO-TAIL SAM DOMAIN JRNL TITL 3 INTERACTION. JRNL REF J.MOL.BIOL. V. 356 142 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16337230 JRNL DOI 10.1016/J.JMB.2005.11.012
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.9 REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPERIMENTAL OBSERVATIONS: 615 REMARK 3 INTERMOLECULAR NOE DISTANCE RESTRAINTS, 328 SHORT RANGE NOE REMARK 3 DISTANCE RESTRAINTS, 163 MEDIUM RANGE NOE DISTANCE RESTRAINTS, REMARK 3 149 LONG RANGE NOE RESTRAINTS, 42 PAIRS OF HYDROGEN BOND REMARK 3 DISTANCE RESTRAINTS AND 69 PAIRS OF PHI/PSI DIHEDRAL ANGLE REMARK 3 RESTRAINTS. AN INITIAL ENSEMBLE OF 500 STRUCTURES WERE REMARK 3 CALCULATED WITH CYANA 2.0. THE TOP 25 STRUCTURES WITH MINIMUM REMARK 3 RESTRAINT VIOLATIONS WERE REFINED IN WATER USING XPLOR-NIH AND REMARK 3 A PROTOCOL BY C. SPRONK. ALL 25 WATER REFINED STRUCTURES HAD REMARK 3 NO NOE VIOLATIONS > 0.5 A AND NO DIHEDRAL VIOLATIONS > 5 REMARK 3 DEGREES. FOR RESIDUES 35-100, THE BACKBONE RMSD OF THE REMARK 3 ENSEMBLE IS 0.75 +/- 0.14 A. RESIDUES 28-32 AND 101-107 ARE REMARK 3 DISORDERED.
REMARK 4 REMARK 4 1Z1V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032192.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.8 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM STE50 SAM U-15N,13C, REMARK 210 20 MM SODIUM PHOSPHATE BUFFER, REMARK 210 PH 7.8, 150 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE N/A, NMRVIEW 5.2, REMARK 210 CYANA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 MET A 31 REMARK 465 PHE A 32 REMARK 465 LYS A 103 REMARK 465 LEU A 104 REMARK 465 GLU A 105 REMARK 465 TRP A 106 REMARK 465 LYS A 107
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 34 70.84 35.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UQV RELATED DB: PDB REMARK 900 SIMILAR TO GRIMSHAW SJ ET AL. (2004). J.BIOL.CHEM. 279(3) : REMARK 900 2192-2201
DBREF 1Z1V A 32 107 UNP P25344 ST50_YEAST 32 107
SEQADV 1Z1V GLY A 28 UNP P25344 CLONING ARTIFACT SEQADV 1Z1V SER A 29 UNP P25344 CLONING ARTIFACT SEQADV 1Z1V HIS A 30 UNP P25344 CLONING ARTIFACT SEQADV 1Z1V MET A 31 UNP P25344 CLONING ARTIFACT
SEQRES 1 A 80 GLY SER HIS MET PHE SER GLN TRP SER VAL ASP ASP VAL SEQRES 2 A 80 ILE THR TRP CYS ILE SER THR LEU GLU VAL GLU GLU THR SEQRES 3 A 80 ASP PRO LEU CYS GLN ARG LEU ARG GLU ASN ASP ILE VAL SEQRES 4 A 80 GLY ASP LEU LEU PRO GLU LEU CYS LEU GLN ASP CYS GLN SEQRES 5 A 80 ASP LEU CYS ASP GLY ASP LEU ASN LYS ALA ILE LYS PHE SEQRES 6 A 80 LYS ILE LEU ILE ASN LYS MET ARG ASP SER LYS LEU GLU SEQRES 7 A 80 TRP LYS
HELIX 1 1 SER A 36 GLU A 49 1 14 HELIX 2 2 ASP A 54 ASN A 63 1 10 HELIX 3 3 LEU A 69 LEU A 73 5 5 HELIX 4 4 CYS A 74 CYS A 82 1 9 HELIX 5 5 ASP A 85 SER A 102 1 18
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000