10 20 30 40 50 60 70 80 1YZS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 28-FEB-05 1YZS
TITLE SOLUTION STRUCTURE OF HUMAN SULFIREDOXIN (SRX)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIREDOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 17-137; COMPND 5 SYNONYM: UPF0238 PROTEIN C20ORF139; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C20ORF139; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS PARB DOMAIN FOLD, OXIDOREDUCTASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.M.GRUSCHUS,D.Y.LEE,J.A.FERRETTI,S.G.RHEE
REVDAT 2 24-FEB-09 1YZS 1 VERSN REVDAT 1 22-MAR-05 1YZS 0
JRNL AUTH J.M.GRUSCHUS,D.Y.LEE,J.A.FERRETTI,S.G.RHEE JRNL TITL SOLUTION STRUCTURE OF HUMAN SULFIREDOXIN (SRX) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.7 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE, BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FIRST 20 RESIDUES (17-36) ARE REMARK 3 FLEXIBLE RANDOM COIL; NO RESTRAINTS WERE USED FOR THESE REMARK 3 RESIDUES
REMARK 4 REMARK 4 1YZS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032117.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE, 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM SULFIREDOXIN U-15N; REMARK 210 50MM PHOSPHATE, 100MM NACL, REMARK 210 2MM DTT; 0.7MM SULFIREDOXIN U- REMARK 210 15N,13C; 50MM PHOSPHATE, 100MM REMARK 210 NACL, 2MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_SHORTCT_ALIPHATIC_NOESY, 3D_13C-SEPARATED_ REMARK 210 AROMATIC_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, NMRPIPE 2.3 REV REMARK 210 2004.184.22.03, NMRDRAW 2.3 REMARK 210 REV 2004.184.22.03, XPLOR-NIH REMARK 210 2.9.7 REMARK 210 METHOD USED : DISTANCE GEOMETRY FOLLOWED BY REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 22 160.21 -46.09 REMARK 500 1 SER A 25 -152.28 -161.34 REMARK 500 1 SER A 35 58.75 -67.91 REMARK 500 1 ASP A 72 104.40 -161.44 REMARK 500 1 PHE A 96 72.31 -106.95 REMARK 500 1 LEU A 108 4.30 -63.97 REMARK 500 1 GLN A 109 26.67 45.20 REMARK 500 1 ALA A 131 -53.70 -155.78 REMARK 500 2 SER A 25 -174.38 -64.07 REMARK 500 2 HIS A 34 56.65 -67.90 REMARK 500 2 SER A 35 -162.42 -58.03 REMARK 500 2 ARG A 37 77.16 -161.77 REMARK 500 2 ASP A 72 105.18 -160.48 REMARK 500 2 PRO A 77 156.19 -49.80 REMARK 500 2 PHE A 96 72.36 -108.11 REMARK 500 2 LEU A 108 2.88 -64.89 REMARK 500 2 GLN A 109 26.37 49.58 REMARK 500 2 ALA A 131 -53.22 -156.04 REMARK 500 3 ALA A 18 60.41 -166.13 REMARK 500 3 GLU A 20 32.59 -170.04 REMARK 500 3 SER A 25 -38.89 -160.89 REMARK 500 3 GLN A 29 29.79 -153.22 REMARK 500 3 HIS A 34 107.66 -167.32 REMARK 500 3 PRO A 77 171.89 -54.47 REMARK 500 3 PHE A 96 72.99 -110.50 REMARK 500 3 LEU A 108 11.49 -68.62 REMARK 500 3 ALA A 131 -55.74 -154.08 REMARK 500 4 SER A 32 149.27 -175.78 REMARK 500 4 ARG A 37 -178.68 -51.81 REMARK 500 4 PRO A 54 158.34 -48.45 REMARK 500 4 ASP A 72 109.19 -171.76 REMARK 500 4 PHE A 96 72.58 -108.90 REMARK 500 4 LEU A 108 7.80 -65.50 REMARK 500 4 ALA A 131 -55.64 -154.63 REMARK 500 5 GLU A 20 3.89 -65.07 REMARK 500 5 PRO A 22 -89.13 -72.71 REMARK 500 5 PRO A 24 -161.12 -75.91 REMARK 500 5 SER A 32 149.82 -175.53 REMARK 500 5 ARG A 37 143.89 -170.12 REMARK 500 5 ASP A 72 87.54 -156.15 REMARK 500 5 PHE A 96 72.54 -109.26 REMARK 500 5 LEU A 108 11.69 -67.14 REMARK 500 5 ALA A 131 -53.78 -158.03 REMARK 500 5 SER A 132 33.07 -99.71 REMARK 500 6 GLU A 20 -90.26 -56.22 REMARK 500 6 SER A 25 10.82 -160.87 REMARK 500 6 SER A 32 115.72 -160.36 REMARK 500 6 HIS A 34 105.36 -160.37 REMARK 500 6 ARG A 37 -175.75 -52.23 REMARK 500 6 ASP A 72 109.36 -161.42 REMARK 500 6 PHE A 96 71.98 -106.62 REMARK 500 6 ALA A 131 -54.93 -154.95 REMARK 500 7 PRO A 24 -167.21 -75.48 REMARK 500 7 SER A 25 -163.51 -169.08 REMARK 500 7 HIS A 34 2.09 -160.32 REMARK 500 7 ASP A 72 102.53 -160.28 REMARK 500 7 PHE A 96 71.98 -105.24 REMARK 500 7 LEU A 108 5.71 -65.49 REMARK 500 7 GLN A 109 21.56 45.24 REMARK 500 7 ALA A 131 -60.61 -150.76 REMARK 500 8 ALA A 18 60.40 -167.00 REMARK 500 8 GLU A 20 -7.15 -164.84 REMARK 500 8 SER A 25 -77.72 -77.35 REMARK 500 8 GLN A 29 -30.26 -164.79 REMARK 500 8 ILE A 33 -40.89 -169.71 REMARK 500 8 HIS A 34 -140.36 -79.80 REMARK 500 8 SER A 35 71.90 -169.73 REMARK 500 8 ARG A 37 140.98 -170.04 REMARK 500 8 ASP A 72 107.89 -171.25 REMARK 500 8 PRO A 77 155.45 -49.76 REMARK 500 8 PHE A 96 72.13 -105.19 REMARK 500 8 GLN A 109 21.75 45.57 REMARK 500 8 ALA A 131 -55.21 -155.07 REMARK 500 9 ALA A 18 60.27 -168.33 REMARK 500 9 PRO A 22 -164.39 -75.25 REMARK 500 9 SER A 25 -26.40 -162.98 REMARK 500 9 HIS A 34 -162.66 -61.77 REMARK 500 9 ARG A 37 144.20 -170.15 REMARK 500 9 ASP A 72 104.63 -160.65 REMARK 500 9 PRO A 77 156.55 -49.81 REMARK 500 9 PHE A 96 72.65 -109.13 REMARK 500 9 LEU A 108 11.77 -66.82 REMARK 500 9 ALA A 131 -58.33 -153.72 REMARK 500 9 SER A 132 39.30 -99.22 REMARK 500 10 ALA A 18 70.99 -169.88 REMARK 500 10 PRO A 19 94.84 -46.29 REMARK 500 10 ASP A 72 91.80 -171.27 REMARK 500 10 PRO A 77 155.82 -48.82 REMARK 500 10 PHE A 96 73.41 -114.77 REMARK 500 10 LEU A 108 5.53 -64.39 REMARK 500 10 GLN A 109 20.02 47.83 REMARK 500 10 ALA A 131 -55.27 -155.60 REMARK 500 10 SER A 132 32.37 -98.15 REMARK 500 11 GLU A 20 40.27 -153.19 REMARK 500 11 PRO A 22 -179.47 -46.28 REMARK 500 11 PRO A 24 34.16 -75.20 REMARK 500 11 SER A 25 32.62 -164.26 REMARK 500 11 GLN A 29 -168.78 -160.82 REMARK 500 11 ALA A 39 57.15 -108.02 REMARK 500 11 ASP A 72 86.68 -158.58 REMARK 500 11 PRO A 77 155.67 -49.20 REMARK 500 11 PHE A 96 72.85 -110.16 REMARK 500 11 LEU A 108 13.09 -68.64 REMARK 500 11 GLN A 109 22.56 41.83 REMARK 500 11 LEU A 129 40.11 -109.27 REMARK 500 11 ALA A 131 -57.24 -151.66 REMARK 500 12 GLU A 20 -13.61 -168.06 REMARK 500 12 SER A 25 50.76 -165.77 REMARK 500 12 HIS A 34 -78.62 -169.50 REMARK 500 12 ARG A 37 88.93 -56.56 REMARK 500 12 PRO A 77 156.08 -49.34 REMARK 500 12 PHE A 96 72.11 -106.01 REMARK 500 12 LEU A 108 7.65 -64.01 REMARK 500 12 ALA A 131 -59.72 -151.89 REMARK 500 13 GLU A 20 -80.30 -50.67 REMARK 500 13 PRO A 22 103.93 -45.69 REMARK 500 13 PRO A 24 -161.66 -75.26 REMARK 500 13 SER A 25 25.95 -74.80 REMARK 500 13 ILE A 33 -163.31 -65.48 REMARK 500 13 HIS A 34 36.76 -167.11 REMARK 500 13 SER A 35 -144.93 -80.37 REMARK 500 13 ARG A 37 85.72 -153.62 REMARK 500 13 ASP A 72 93.25 -162.16 REMARK 500 13 SER A 75 9.17 -66.06 REMARK 500 13 PRO A 78 170.21 -47.04 REMARK 500 13 PHE A 96 71.97 -105.02 REMARK 500 13 LEU A 108 0.25 -68.96 REMARK 500 13 ALA A 131 -55.41 -158.00 REMARK 500 13 SER A 132 36.01 -99.88 REMARK 500 14 SER A 25 -34.27 -169.92 REMARK 500 14 ILE A 33 17.06 -145.76 REMARK 500 14 SER A 35 1.25 -168.64 REMARK 500 14 ASP A 72 109.76 -164.81 REMARK 500 14 PHE A 96 72.99 -111.52 REMARK 500 14 LEU A 108 5.93 -64.03 REMARK 500 14 ALA A 131 -58.65 -153.16 REMARK 500 14 SER A 132 37.49 -99.67 REMARK 500 15 ALA A 18 67.75 -165.18 REMARK 500 15 PRO A 19 153.31 -46.04 REMARK 500 15 GLU A 20 -6.41 -161.17 REMARK 500 15 SER A 25 -64.46 -161.69 REMARK 500 15 GLN A 29 45.21 -68.67 REMARK 500 15 HIS A 34 -171.47 -57.28 REMARK 500 15 SER A 35 -160.12 -58.74 REMARK 500 15 ARG A 37 -173.84 -63.40 REMARK 500 15 ASP A 72 88.09 -158.54 REMARK 500 15 PRO A 77 155.79 -49.70 REMARK 500 15 PHE A 96 72.68 -111.35 REMARK 500 15 ALA A 131 -59.59 -150.30 REMARK 500 16 GLU A 20 -104.16 -77.22 REMARK 500 16 PRO A 24 -9.53 -46.09 REMARK 500 16 GLN A 29 -88.32 -71.68 REMARK 500 16 HIS A 34 -26.45 -169.66 REMARK 500 16 PRO A 54 158.87 -47.23 REMARK 500 16 ASP A 72 89.05 -162.99 REMARK 500 16 PHE A 96 72.02 -106.83 REMARK 500 16 ALA A 131 -55.26 -157.73 REMARK 500 16 SER A 132 35.48 -98.47 REMARK 500 17 GLU A 20 -161.83 -61.70 REMARK 500 17 PRO A 22 -91.17 -74.15 REMARK 500 17 PRO A 24 106.10 -43.50 REMARK 500 17 GLN A 29 -71.39 -73.08 REMARK 500 17 HIS A 34 -86.79 -50.91 REMARK 500 17 SER A 35 97.08 -49.93 REMARK 500 17 PRO A 54 157.52 -49.36 REMARK 500 17 ASP A 72 85.12 -152.08 REMARK 500 17 PRO A 78 173.35 -45.96 REMARK 500 17 PHE A 96 72.67 -108.49 REMARK 500 17 ALA A 131 -58.55 -151.92 REMARK 500 18 ALA A 18 60.32 -168.59 REMARK 500 18 SER A 25 66.12 -168.28 REMARK 500 18 GLN A 29 2.85 -162.66 REMARK 500 18 HIS A 34 95.70 -56.59 REMARK 500 18 SER A 35 83.42 -165.17 REMARK 500 18 ASP A 72 87.12 -158.87 REMARK 500 18 SER A 75 13.41 -68.70 REMARK 500 18 PRO A 77 156.21 -49.64 REMARK 500 18 PHE A 96 72.36 -111.66 REMARK 500 18 ALA A 131 -58.16 -152.89 REMARK 500 18 SER A 132 35.49 -99.06 REMARK 500 19 GLU A 20 90.98 -165.81 REMARK 500 19 SER A 25 -39.60 -169.17 REMARK 500 19 SER A 32 145.14 -175.53 REMARK 500 19 ASP A 72 93.06 -161.89 REMARK 500 19 SER A 75 9.37 -66.75 REMARK 500 19 PRO A 78 173.28 -42.70 REMARK 500 19 PHE A 96 73.32 -114.91 REMARK 500 19 LEU A 108 3.02 -64.12 REMARK 500 19 LEU A 129 42.09 -109.58 REMARK 500 19 ALA A 131 -54.62 -157.52 REMARK 500 19 SER A 132 33.87 -99.51 REMARK 500 20 PRO A 19 97.63 -56.01 REMARK 500 20 PRO A 22 94.99 -46.22 REMARK 500 20 SER A 25 -77.29 -169.99 REMARK 500 20 GLN A 29 -66.23 -161.45 REMARK 500 20 SER A 35 -25.15 -163.56 REMARK 500 20 PHE A 96 72.65 -111.46 REMARK 500 20 LEU A 108 4.98 -64.57 REMARK 500 20 GLN A 109 19.92 49.97 REMARK 500 20 ALA A 131 -55.96 -153.81 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XW3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SULFIREDOXIN (SRX)
DBREF 1YZS A 17 137 UNP Q9BYN0 SRX_HUMAN 17 137
SEQRES 1 A 121 GLY ALA PRO GLU GLY PRO GLY PRO SER GLY GLY ALA GLN SEQRES 2 A 121 GLY GLY SER ILE HIS SER GLY ARG ILE ALA ALA VAL HIS SEQRES 3 A 121 ASN VAL PRO LEU SER VAL LEU ILE ARG PRO LEU PRO SER SEQRES 4 A 121 VAL LEU ASP PRO ALA LYS VAL GLN SER LEU VAL ASP THR SEQRES 5 A 121 ILE ARG GLU ASP PRO ASP SER VAL PRO PRO ILE ASP VAL SEQRES 6 A 121 LEU TRP ILE LYS GLY ALA GLN GLY GLY ASP TYR PHE TYR SEQRES 7 A 121 SER PHE GLY GLY CYS HIS ARG TYR ALA ALA TYR GLN GLN SEQRES 8 A 121 LEU GLN ARG GLU THR ILE PRO ALA LYS LEU VAL GLN SER SEQRES 9 A 121 THR LEU SER ASP LEU ARG VAL TYR LEU GLY ALA SER THR SEQRES 10 A 121 PRO ASP LEU GLN
HELIX 1 1 ASP A 58 ASP A 72 1 15 HELIX 2 2 PRO A 73 VAL A 76 5 4 HELIX 3 3 GLY A 98 LEU A 108 1 11 HELIX 4 4 THR A 121 GLY A 130 1 10
SHEET 1 A 5 VAL A 41 PRO A 45 0 SHEET 2 A 5 THR A 112 GLN A 119 -1 O ALA A 115 N HIS A 42 SHEET 3 A 5 ILE A 79 LYS A 85 1 N ILE A 79 O LYS A 116 SHEET 4 A 5 ASP A 91 TYR A 94 -1 O TYR A 92 N ILE A 84 SHEET 5 A 5 LEU A 49 ILE A 50 1 N ILE A 50 O PHE A 93
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000