1YXR - Header Asymmetric Unit

HEADER PROTEIN TRAFFICKING 22-FEB-05 1YXR

TITLE NMR STRUCTURE OF VPS4A MIT DOMAIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING FACTOR 4A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIT DOMAIN; COMPND 5 SYNONYM: VPS4A ; SKD1 PROTEIN; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: 27183; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 OTHER_DETAILS: PET16B REENGINEERED TO CONTAIN A TEV SOURCE 12 CLEAVAGE SITE IN PLACE OF THE NORMAL FACTOR XA SITE

KEYWDS VPS4; MIT DOMAIN, PROTEIN TRAFFICKING

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR J.A.SCOTT,J.GASPAR,M.STUCHELL,S.ALAM,J.SKALICKY, AUTHOR 2 W.I.SUNDQUIST

REVDAT 2 24-FEB-09 1YXR 1 VERSN REVDAT 1 06-SEP-05 1YXR 0

JRNL AUTH J.A.SCOTT,J.GASPAR,M.STUCHELL,S.ALAM,J.SKALICKY, JRNL AUTH 2 W.I.SUNDQUIST JRNL TITL NMR STRUCTURE OF VPS4A MIT DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : AT BRUNGER, ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1432 NOE REMARK 3 DERIVED DISTANCE CONSTRAINTS, 150 DIHEDRAL ANGLE CONSTRAINTS REMARK 3 (GENERATED BY TALOS) AND 114 DISTANCE CONSTRAINTS FROM REMARK 3 HYDROGEN BONDS

REMARK 4 REMARK 4 1YXR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032045.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNIFORM LABELING WITH 15N AND REMARK 210 13C. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97, SPARKY 3.110, CYANA REMARK 210 2.0 REMARK 210 METHOD USED : AUTOMATED NOE ASSIGNMENT REMARK 210 USING CYANA AND TORSION ANGLE REMARK 210 DYNAMICS FOR STRUCTURE REMARK 210 CALCULATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 24 46.12 -109.04 REMARK 500 1 HIS A 48 -165.72 -108.10 REMARK 500 2 ASN A 24 46.14 -107.97 REMARK 500 2 HIS A 48 -169.15 -106.41 REMARK 500 3 ASN A 24 46.11 -106.54 REMARK 500 4 TYR A 45 -63.95 -91.02 REMARK 500 5 ASN A 24 46.18 -109.44 REMARK 500 5 HIS A 48 -165.36 -106.30 REMARK 500 7 HIS A 48 -167.16 -114.82 REMARK 500 8 HIS A 48 -168.13 -127.96 REMARK 500 9 HIS A 48 -166.92 -105.23 REMARK 500 10 HIS A 48 -167.79 -100.08 REMARK 500 11 TYR A 45 -64.39 -90.53 REMARK 500 11 HIS A 48 -168.40 -120.56 REMARK 500 14 HIS A 48 -168.04 -107.01 REMARK 500 15 HIS A 48 -166.27 -107.16 REMARK 500 18 HIS A 48 -168.33 -77.41 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XWI RELATED DB: PDB REMARK 900 VPS4B CRYSTAL STUCTURE

DBREF 1YXR A 1 77 UNP Q9UN37 VPS4A_HUMAN 1 77

SEQRES 1 A 77 MET THR THR SER THR LEU GLN LYS ALA ILE ASP LEU VAL SEQRES 2 A 77 THR LYS ALA THR GLU GLU ASP LYS ALA LYS ASN TYR GLU SEQRES 3 A 77 GLU ALA LEU ARG LEU TYR GLN HIS ALA VAL GLU TYR PHE SEQRES 4 A 77 LEU HIS ALA ILE LYS TYR GLU ALA HIS SER ASP LYS ALA SEQRES 5 A 77 LYS GLU SER ILE ARG ALA LYS CYS VAL GLN TYR LEU ASP SEQRES 6 A 77 ARG ALA GLU LYS LEU LYS ASP TYR LEU ARG SER LYS

HELIX 1 1 SER A 4 ALA A 22 1 19 HELIX 2 2 ASN A 24 GLU A 46 1 23 HELIX 3 3 SER A 49 LYS A 77 1 29

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000