10 20 30 40 50 60 70 80 1YWS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-05 1YWS
TITLE SOLUTION STRUCTURE OF YBL071W-A FROM SACCHAROMYCES TITLE 2 CEREVISIAE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YBL071W-A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YBL071W-A, KTI11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) GOLD MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11
KEYWDS ZINC FINGER, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.A.LUKIN,V.GUIDO,C.H.ARROWSMITH,NORTHEAST STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 1YWS 1 VERSN REVDAT 1 08-MAR-05 1YWS 0
JRNL AUTH J.A.LUKIN,V.GUIDO,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF YBL071W-A FROM SACCHAROMYCES JRNL TITL 2 CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 100 STRUCTURES WERE CALCULATED BY REMARK 3 CYANA 2.0 USING 1294 NOE-DERIVED DISTANCE CONSTRAINTS, 122 REMARK 3 DIHEDRAL ANGLE CONSTRAINTS, AND 54 DISTANCE CONSTRAINTS FROM REMARK 3 HYDROGEN BONDS. THE 20 STRUCTURES WITH LOWEST TARGET FUNCTIONS REMARK 3 WERE SUBJECTED TO REFINEMENT WITH CNS 1.1.
REMARK 4 REMARK 4 1YWS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032010.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 450MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM YBL071W-A, U-15N, U-13C; REMARK 210 450MM NACL, 1MM BENZAMIDINE, REMARK 210 0.01% NAN3, 10MM MOPS, 0.01MM REMARK 210 ZNSO4, 90% H2O, 10% D2O; 1MM REMARK 210 YBL071W-A, U-15N, U-13C; 450MM REMARK 210 NACL, 1MM BENZAMIDINE, 0.01% REMARK 210 NAN3, 10MM MOPS, 0.01MM ZNSO4, REMARK 210 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, CYANA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 19 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 27 -43.99 175.54 REMARK 500 1 SER A 49 -55.80 84.73 REMARK 500 1 SER A 51 64.07 67.42 REMARK 500 2 CYS A 27 -46.71 -177.09 REMARK 500 2 SER A 49 -59.36 89.93 REMARK 500 2 SER A 51 74.53 69.01 REMARK 500 3 SER A 2 -165.33 63.24 REMARK 500 3 PRO A 24 109.83 -56.97 REMARK 500 3 CYS A 27 -52.72 -179.40 REMARK 500 3 SER A 49 -55.75 85.50 REMARK 500 3 ALA A 80 29.78 -149.61 REMARK 500 4 CYS A 27 -40.29 -176.71 REMARK 500 4 SER A 49 -56.72 86.97 REMARK 500 4 SER A 51 72.78 69.05 REMARK 500 5 CYS A 27 -44.38 177.83 REMARK 500 5 SER A 49 -54.40 78.09 REMARK 500 5 SER A 51 42.91 70.49 REMARK 500 6 CYS A 27 -41.27 179.52 REMARK 500 6 SER A 49 -58.39 89.28 REMARK 500 7 CYS A 27 -41.50 175.15 REMARK 500 7 SER A 49 -53.89 83.22 REMARK 500 8 CYS A 27 -54.05 -178.55 REMARK 500 8 SER A 49 -53.53 85.78 REMARK 500 8 PRO A 74 107.13 -34.62 REMARK 500 9 CYS A 27 -47.07 -176.56 REMARK 500 9 SER A 49 -58.43 90.90 REMARK 500 9 SER A 51 73.25 69.65 REMARK 500 9 ALA A 81 106.72 -57.17 REMARK 500 10 PRO A 24 107.96 -56.82 REMARK 500 10 CYS A 27 -46.58 178.36 REMARK 500 10 SER A 49 -57.37 89.58 REMARK 500 10 SER A 51 73.23 70.38 REMARK 500 11 SER A 2 -158.04 -102.29 REMARK 500 11 CYS A 27 -39.72 177.61 REMARK 500 11 SER A 49 -60.42 86.51 REMARK 500 11 ALA A 80 112.13 -165.83 REMARK 500 12 CYS A 27 -40.52 174.93 REMARK 500 12 SER A 49 -51.29 79.78 REMARK 500 12 PRO A 74 108.13 -35.17 REMARK 500 13 CYS A 27 -43.71 -175.63 REMARK 500 13 SER A 49 -55.88 88.85 REMARK 500 13 SER A 51 74.02 68.49 REMARK 500 13 ALA A 80 -162.53 55.53 REMARK 500 14 CYS A 27 -43.65 178.83 REMARK 500 14 SER A 49 -57.46 88.66 REMARK 500 14 SER A 51 70.13 66.92 REMARK 500 15 CYS A 27 -46.17 177.14 REMARK 500 15 SER A 49 -60.38 86.79 REMARK 500 15 SER A 51 79.61 64.48 REMARK 500 15 ALA A 81 -48.79 -132.55 REMARK 500 16 CYS A 27 -52.17 -178.54 REMARK 500 16 SER A 49 -56.19 85.36 REMARK 500 17 CYS A 27 -44.95 -179.75 REMARK 500 17 SER A 49 -57.33 88.51 REMARK 500 17 ALA A 81 -46.77 -158.25 REMARK 500 18 CYS A 27 -49.88 172.48 REMARK 500 18 SER A 49 -61.37 86.21 REMARK 500 19 CYS A 27 -45.43 174.62 REMARK 500 19 SER A 49 -55.39 85.95 REMARK 500 19 SER A 51 76.26 68.96 REMARK 500 19 ALA A 79 11.99 56.66 REMARK 500 20 GLU A 6 108.54 -162.19 REMARK 500 20 CYS A 27 -47.77 -179.15 REMARK 500 20 SER A 49 -56.91 87.13 REMARK 500 20 SER A 51 44.07 70.27 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 83 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 CYS A 27 SG 110.2 REMARK 620 3 CYS A 47 SG 109.3 109.8 REMARK 620 4 CYS A 50 SG 109.8 110.0 107.7 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 83
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YT655 RELATED DB: TARGETDB
DBREF 1YWS A 1 82 GB 21648335 NP_660100 1 82
SEQRES 1 A 82 MET SER THR TYR ASP GLU ILE GLU ILE GLU ASP MET THR SEQRES 2 A 82 PHE GLU PRO GLU ASN GLN MET PHE THR TYR PRO CYS PRO SEQRES 3 A 82 CYS GLY ASP ARG PHE GLN ILE TYR LEU ASP ASP MET PHE SEQRES 4 A 82 GLU GLY GLU LYS VAL ALA VAL CYS PRO SER CYS SER LEU SEQRES 5 A 82 MET ILE ASP VAL VAL PHE ASP LYS GLU ASP LEU ALA GLU SEQRES 6 A 82 TYR TYR GLU GLU ALA GLY ILE HIS PRO PRO GLU PRO ILE SEQRES 7 A 82 ALA ALA ALA ALA
HET ZN A 83 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 LEU A 35 GLU A 40 1 6 HELIX 2 2 ASP A 59 GLY A 71 1 13
SHEET 1 A 3 GLU A 6 GLU A 8 0 SHEET 2 A 3 LEU A 52 VAL A 57 1 O ASP A 55 N ILE A 7 SHEET 3 A 3 VAL A 44 CYS A 47 -1 N ALA A 45 O ILE A 54 SHEET 1 B 3 THR A 13 GLU A 15 0 SHEET 2 B 3 MET A 20 TYR A 23 -1 O THR A 22 N THR A 13 SHEET 3 B 3 PHE A 31 TYR A 34 -1 O ILE A 33 N PHE A 21
LINK ZN ZN A 83 SG CYS A 25 1555 1555 2.32 LINK ZN ZN A 83 SG CYS A 27 1555 1555 2.32 LINK ZN ZN A 83 SG CYS A 47 1555 1555 2.31 LINK ZN ZN A 83 SG CYS A 50 1555 1555 2.32
SITE 1 AC1 5 CYS A 25 CYS A 27 ASP A 29 CYS A 47 SITE 2 AC1 5 CYS A 50
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000