10 20 30 40 50 60 70 80 1YWM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SURFACE ACTIVE PROTEIN 18-FEB-05 1YWM
TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF GROUP B STREPTOCOCCUS TITLE 2 ALPHA C PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: C PROTEIN ALPHA-ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 205921; SOURCE 4 STRAIN: A909; SOURCE 5 GENE: BCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A
KEYWDS BETA SANDWICH, FIBRONECTIN FOLD, ANTIPARALLEL THREE-HELIX BUNDLE, KEYWDS 2 SURFACE ACTIVE PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR T.C.AUPERIN,G.R.BOLDUC,M.J.BARON,A.HEROUX,D.J.FILMAN,L.C.MADOFF, AUTHOR 2 J.M.HOGLE
REVDAT 4 13-JUL-11 1YWM 1 VERSN REVDAT 3 24-FEB-09 1YWM 1 VERSN REVDAT 2 10-MAY-05 1YWM 1 JRNL REVDAT 1 08-MAR-05 1YWM 0
JRNL AUTH T.C.AUPERIN,G.R.BOLDUC,M.J.BARON,A.HEROUX,D.J.FILMAN, JRNL AUTH 2 L.C.MADOFF,J.M.HOGLE JRNL TITL CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE GROUP B JRNL TITL 2 STREPTOCOCCUS ALPHA C PROTEIN. JRNL REF J.BIOL.CHEM. V. 280 18245 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15753100 JRNL DOI 10.1074/JBC.M412391200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.MICHEL,L.C.MADOFF,K.OLSON,D.E.KLING,D.L.KASPER, REMARK 1 AUTH 2 F.M.AUSUBEL REMARK 1 TITL LARGE, IDENTICAL, TANDEM REPEATING UNITS IN THE C PROTEIN REMARK 1 TITL 2 ALPHA ANTIGEN GENE, BCA, OF GROUP B STREPTOCOCCI REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 10060 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 1438195 REMARK 1 DOI 10.1073/PNAS.89.21.10060 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.R.BOLDUC,M.J.BARON,C.GRAVEKAMP,C.S.LACHENAUER,L.C.MADOFF REMARK 1 TITL THE ALPHA C PROTEIN MEDIATES INTERNALIZATION OF GROUP B REMARK 1 TITL 2 STREPTOCOCCUS WITHIN HUMAN CERVICAL EPITHELIAL CELLS REMARK 1 REF CELL.MICROBIOL. V. 4 751 2002 REMARK 1 REFN ISSN 1462-5814 REMARK 1 PMID 12427097 REMARK 1 DOI 10.1046/J.1462-5822.2002.00227.X REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.BARON,G.R.BOLDUC,M.B.GOLDBERG,T.C.AUPERIN,L.C.MADOFF REMARK 1 TITL ALPHA C PROTEIN OF GROUP B STREPTOCOCCUS BINDS HOST CELL REMARK 1 TITL 2 SURFACE GLYCOSAMINOGLYCAN AND ENTERS CELLS BY AN REMARK 1 TITL 3 ACTIN-DEPENDENT MECHANISM REMARK 1 REF J.BIOL.CHEM. V. 279 24714 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15044471 REMARK 1 DOI 10.1074/JBC.M402164200
REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2193 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1448 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1964 ; 1.406 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 179 ; 5.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1054 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 647 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 894 ; 3.332 ; 1.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1458 ; 5.160 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 554 ; 7.814 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 506 ; 9.687 ; 4.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THERE IS NO SINGLE WELL ORDERED CONFORMATION FOR LEU227. REMARK 3 THE REFINEMENT STATISTICS FOR THE MUTANT SEMET SET ARE RESOLUTION REMARK 3 RANGE 2.6-12, 0.269 RWORK, 0.308 RFREE, 0.010 RMSD BOND LENGTH AND REMARK 3 1.552 RMSD BOND ANGLE.
REMARK 4 REMARK 4 1YWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB032004.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-00; 15-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 77.0; NULL REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 19-ID; X26C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.01; 0.9763 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 14.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: ALPHA C SELENOMETHIONYL MUTANT (2 SELENIUM ATOMS) REMARK 200 REMARK 200 REMARK: THE STATISTICS FOR THE MUTANT SEMET USED FOR EXPERIMENTAL REMARK 200 PHASING ARE: RESOLUTION RANGE 2.6-30, 97.4% COMPLETENESS, 8581 REMARK 200 REFLECTIONS, 12.8 REDUNDANCY, 6.8 RSYM, 30.7 <I>/
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG4000, DTT, PH 4.60, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.53900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.07800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.80850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 226.34750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.26950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.53900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 181.07800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 226.34750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 135.80850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.26950 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 MET A 42 REMARK 465 THR A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 GLN A 46 REMARK 465 GLN A 47 REMARK 465 MET A 48 REMARK 465 GLY A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 ILE A 53 REMARK 465 VAL A 54 REMARK 465 ALA A 55 REMARK 465 ALA A 56 REMARK 465 HIS A 237 REMARK 465 HIS A 238
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 438 O HOH A 519 2.13 REMARK 500 O HOH A 503 O HOH A 515 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 352 DISTANCE = 5.32 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2002
DBREF 1YWM A 52 225 UNP Q02192 BCA_STRA1 52 225
SEQADV 1YWM MET A 39 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM ALA A 40 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM SER A 41 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM MET A 42 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM THR A 43 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLY A 44 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLY A 45 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLN A 46 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLN A 47 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM MET A 48 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLY A 49 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM ARG A 50 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLY A 51 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM LYS A 226 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM LEU A 227 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM ALA A 228 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM ALA A 229 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM ALA A 230 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM LEU A 231 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM GLU A 232 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM HIS A 233 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM HIS A 234 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM HIS A 235 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM HIS A 236 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM HIS A 237 UNP Q02192 CLONING ARTIFACT SEQADV 1YWM HIS A 238 UNP Q02192 CLONING ARTIFACT
SEQRES 1 A 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 200 SER ILE VAL ALA ALA SER THR ILE PRO GLY SER ALA ALA SEQRES 3 A 200 THR LEU ASN THR SER ILE THR LYS ASN ILE GLN ASN GLY SEQRES 4 A 200 ASN ALA TYR ILE ASP LEU TYR ASP VAL LYS LEU GLY LYS SEQRES 5 A 200 ILE ASP PRO LEU GLN LEU ILE VAL LEU GLU GLN GLY PHE SEQRES 6 A 200 THR ALA LYS TYR VAL PHE ARG GLN GLY THR LYS TYR TYR SEQRES 7 A 200 GLY ASP VAL SER GLN LEU GLN SER THR GLY ARG ALA SER SEQRES 8 A 200 LEU THR TYR ASN ILE PHE GLY GLU ASP GLY LEU PRO HIS SEQRES 9 A 200 VAL LYS THR ASP GLY GLN ILE ASP ILE VAL SER VAL ALA SEQRES 10 A 200 LEU THR ILE TYR ASP SER THR THR LEU ARG ASP LYS ILE SEQRES 11 A 200 GLU GLU VAL ARG THR ASN ALA ASN ASP PRO LYS TRP THR SEQRES 12 A 200 GLU GLU SER ARG THR GLU VAL LEU THR GLY LEU ASP THR SEQRES 13 A 200 ILE LYS THR ASP ILE ASP ASN ASN PRO LYS THR GLN THR SEQRES 14 A 200 ASP ILE ASP SER LYS ILE VAL GLU VAL ASN GLU LEU GLU SEQRES 15 A 200 LYS LEU LEU VAL LEU LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 16 A 200 HIS HIS HIS HIS HIS
HET DTU A1001 8 HET GOL A2001 6 HET GOL A2002 6
HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 DTU C4 H10 O2 S2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *222(H2 O)
HELIX 1 1 LEU A 83 LEU A 88 1 6 HELIX 2 2 ASP A 92 GLN A 95 5 4 HELIX 3 3 ASP A 118 LEU A 122 5 5 HELIX 4 4 SER A 161 ASN A 176 1 16 HELIX 5 5 THR A 181 ASN A 202 1 22 HELIX 6 6 THR A 205 LYS A 221 1 17 HELIX 7 7 LEU A 225 HIS A 233 1 9
SHEET 1 A 2 ALA A 64 LEU A 66 0 SHEET 2 A 2 ILE A 97 LEU A 99 -1 O VAL A 98 N THR A 65 SHEET 1 B 6 ILE A 74 GLN A 75 0 SHEET 2 B 6 ASN A 78 ASP A 82 -1 O ASN A 78 N GLN A 75 SHEET 3 B 6 ILE A 151 TYR A 159 1 O ALA A 155 N ALA A 79 SHEET 4 B 6 GLY A 126 PHE A 135 -1 N LEU A 130 O VAL A 154 SHEET 5 B 6 THR A 104 GLN A 111 -1 N LYS A 106 O ASN A 133 SHEET 6 B 6 LYS A 114 TYR A 116 -1 O TYR A 116 N PHE A 109
SITE 1 AC1 8 THR A 104 GLY A 117 GLY A 136 GLU A 137 SITE 2 AC1 8 GLY A 139 HOH A 393 HOH A 451 HOH A 512 SITE 1 AC2 5 LYS A 144 GLN A 148 ILE A 149 HOH A 426 SITE 2 AC2 5 HOH A 428 SITE 1 AC3 5 SER A 153 LYS A 167 GLU A 220 HOH A 328 SITE 2 AC3 5 HOH A 414
CRYST1 56.464 56.464 271.617 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017710 0.010225 0.000000 0.00000
SCALE2 0.000000 0.020450 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003682 0.00000