10 20 30 40 50 60 70 80 1YTR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIBIOTIC 11-FEB-05 1YTR
TITLE NMR STRUCTURE OF PLANTARICIN A IN DPC MICELLES, 20 TITLE 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN PLANTARICIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN SOURCE 5 LACTOBACILLUS PLANTARUM.
KEYWDS ANTIBIOTIC, PHEROMONE, AMPHIPATHIC HELIX, MICELLE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.E.KRISTIANSEN,G.FIMLAND,D.MANTZILAS,J.NISSEN-MEYER
REVDAT 3 24-FEB-09 1YTR 1 VERSN REVDAT 2 21-JUN-05 1YTR 1 JRNL REVDAT 1 17-MAY-05 1YTR 0
JRNL AUTH P.E.KRISTIANSEN,G.FIMLAND,D.MANTZILAS, JRNL AUTH 2 J.NISSEN-MEYER JRNL TITL STRUCTURE AND MODE OF ACTION OF THE JRNL TITL 2 MEMBRANE-PERMEABILIZING ANTIMICROBIAL PEPTIDE JRNL TITL 3 PHEROMONE PLANTARICIN A JRNL REF J.BIOL.CHEM. V. 280 22945 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15805109 JRNL DOI 10.1074/JBC.M501620200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.1 REMARK 3 AUTHORS : GUNTERT P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YTR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031915.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.9MM PLNA IN 100MM DPC, 10% REMARK 210 D2O, 90% H20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY, DQCOSY, 1H-15N REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TALOS SIMULATED REMARK 210 ANNEALING ANNEALING REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.51 -141.32 REMARK 500 1 ALA A 4 122.49 62.06 REMARK 500 1 GLN A 8 -164.34 72.19 REMARK 500 1 MET A 9 -40.26 -175.38 REMARK 500 1 ALA A 11 -99.11 -167.91 REMARK 500 2 ALA A 4 136.92 179.92 REMARK 500 2 TYR A 5 56.60 -159.32 REMARK 500 2 SER A 6 -40.77 87.65 REMARK 500 2 LEU A 7 105.05 -53.11 REMARK 500 2 GLN A 8 -40.48 -170.98 REMARK 500 2 ALA A 11 -62.93 -165.04 REMARK 500 3 SER A 2 104.43 -178.74 REMARK 500 3 ALA A 4 89.60 -174.49 REMARK 500 3 TYR A 5 57.09 -106.94 REMARK 500 3 SER A 6 173.34 58.10 REMARK 500 3 GLN A 8 116.42 63.40 REMARK 500 3 ALA A 11 -70.98 -174.81 REMARK 500 4 SER A 2 117.61 68.43 REMARK 500 4 ALA A 4 171.46 -51.84 REMARK 500 4 SER A 6 -28.47 161.50 REMARK 500 4 LEU A 7 -62.34 -162.93 REMARK 500 4 GLN A 8 136.61 85.76 REMARK 500 4 ALA A 11 -53.72 -173.38 REMARK 500 5 SER A 2 80.84 40.91 REMARK 500 5 ALA A 4 -63.80 -157.21 REMARK 500 5 TYR A 5 81.68 39.06 REMARK 500 5 SER A 6 162.44 59.75 REMARK 500 5 MET A 9 -50.94 -163.46 REMARK 500 5 ALA A 11 -72.52 -174.08 REMARK 500 5 TRP A 24 -71.51 -72.00 REMARK 500 6 SER A 3 -63.01 69.39 REMARK 500 6 LEU A 7 -106.03 -57.81 REMARK 500 6 MET A 9 -46.38 -145.05 REMARK 500 6 ALA A 11 -75.89 166.93 REMARK 500 7 SER A 3 92.02 -160.33 REMARK 500 7 LEU A 7 -47.53 -139.15 REMARK 500 7 ALA A 11 -60.09 -157.42 REMARK 500 8 SER A 2 89.48 -163.63 REMARK 500 8 SER A 3 -68.45 68.30 REMARK 500 8 ALA A 4 -144.64 42.84 REMARK 500 8 SER A 6 153.01 64.61 REMARK 500 8 LEU A 7 -55.98 -126.45 REMARK 500 8 MET A 9 -37.09 179.96 REMARK 500 8 ALA A 11 -66.14 -172.85 REMARK 500 8 TRP A 24 -75.36 -70.63 REMARK 500 9 TYR A 5 54.60 -148.05 REMARK 500 9 GLN A 8 116.38 -166.44 REMARK 500 9 MET A 9 -55.94 -149.87 REMARK 500 9 ALA A 11 -78.68 -151.05 REMARK 500 10 SER A 2 -60.39 69.86 REMARK 500 10 SER A 3 -60.16 177.74 REMARK 500 10 ALA A 4 145.14 61.73 REMARK 500 10 TYR A 5 59.22 -174.29 REMARK 500 10 SER A 6 -46.12 -145.56 REMARK 500 10 LEU A 7 93.79 47.50 REMARK 500 10 MET A 9 -40.37 -168.90 REMARK 500 10 ALA A 11 -52.15 174.11 REMARK 500 11 SER A 3 76.58 -112.09 REMARK 500 11 ALA A 4 -62.47 -177.68 REMARK 500 11 TYR A 5 81.64 38.63 REMARK 500 11 SER A 6 166.91 55.74 REMARK 500 11 LEU A 7 -49.59 -142.22 REMARK 500 11 MET A 9 -44.70 -165.72 REMARK 500 11 ALA A 11 -41.25 163.53 REMARK 500 12 GLN A 8 -112.22 -124.67 REMARK 500 12 MET A 9 -34.21 178.33 REMARK 500 12 ALA A 11 -53.29 -171.06 REMARK 500 13 SER A 2 108.58 178.29 REMARK 500 13 SER A 6 167.55 177.75 REMARK 500 13 GLN A 8 -104.87 -142.45 REMARK 500 13 MET A 9 -37.72 169.47 REMARK 500 13 ALA A 11 -101.35 -149.11 REMARK 500 14 SER A 2 105.81 64.07 REMARK 500 14 SER A 3 100.09 53.60 REMARK 500 14 ALA A 4 -76.22 -139.02 REMARK 500 14 TYR A 5 34.07 -174.07 REMARK 500 14 SER A 6 137.08 -39.95 REMARK 500 14 GLN A 8 115.35 59.47 REMARK 500 14 MET A 9 -46.33 -161.05 REMARK 500 14 ALA A 11 -55.91 -175.60 REMARK 500 15 SER A 2 -58.84 -150.81 REMARK 500 15 ALA A 4 -145.69 -138.82 REMARK 500 15 LEU A 7 -58.36 -163.45 REMARK 500 15 MET A 9 -39.32 -178.18 REMARK 500 15 ALA A 11 -76.67 -156.11 REMARK 500 16 SER A 3 76.27 -111.35 REMARK 500 16 LEU A 7 -59.24 -136.69 REMARK 500 16 MET A 9 -49.43 -144.56 REMARK 500 16 ALA A 11 -55.55 -163.39 REMARK 500 17 ALA A 4 -59.80 -170.94 REMARK 500 17 TYR A 5 76.25 46.82 REMARK 500 17 SER A 6 -41.82 -167.31 REMARK 500 17 LEU A 7 105.03 -56.79 REMARK 500 17 MET A 9 -45.45 -150.33 REMARK 500 17 ALA A 11 -77.31 177.39 REMARK 500 17 ALA A 13 -38.37 -38.89 REMARK 500 18 MET A 9 -52.33 -157.71 REMARK 500 18 ALA A 11 -47.65 171.90 REMARK 500 19 SER A 2 91.20 49.00 REMARK 500 19 SER A 6 -27.16 159.69 REMARK 500 19 MET A 9 -50.12 -164.62 REMARK 500 19 ALA A 11 -56.61 -178.23 REMARK 500 20 SER A 3 -70.12 -160.81 REMARK 500 20 ALA A 4 122.56 172.08 REMARK 500 20 GLN A 8 121.36 65.32 REMARK 500 20 MET A 9 -54.20 -161.01 REMARK 500 20 ALA A 11 -41.72 163.60 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1YTR A 1 26 UNP P80214 PLNA_LACPL 23 48
SEQRES 1 A 26 LYS SER SER ALA TYR SER LEU GLN MET GLY ALA THR ALA SEQRES 2 A 26 ILE LYS GLN VAL LYS LYS LEU PHE LYS LYS TRP GLY TRP
HELIX 1 1 ALA A 11 LYS A 22 1 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000