10 20 30 40 50 60 70 80 1YT6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DE NOVO PROTEIN 10-FEB-05 1YT6
TITLE NMR STRUCTURE OF PEPTIDE SD
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE SD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED
KEYWDS GIBBERELLIN, MIMIC, STD-NMR, DE NOVO PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 50
AUTHOR T.MURATA,H.HEMMI,S.NAKAMURA,K.SHIMIZU,Y.SUZUKI,I.YAMAGUCHI
REVDAT 2 24-FEB-09 1YT6 1 VERSN REVDAT 1 27-SEP-05 1YT6 0
JRNL AUTH T.MURATA,H.HEMMI,S.NAKAMURA,K.SHIMIZU,Y.SUZUKI, JRNL AUTH 2 I.YAMAGUCHI JRNL TITL STRUCTURE, EPITOPE MAPPING, AND DOCKING SIMULATION JRNL TITL 2 OF A GIBBERELLIN MIMIC PEPTIDE AS A PEPTIDYL JRNL TITL 3 MIMOTOPE FOR A HYDROPHOBIC LIGAND. JRNL REF FEBS J. V. 272 4938 2005 JRNL REFN ISSN 1742-464X JRNL PMID 16176267 JRNL DOI 10.1111/J.1742-4658.2005.04902.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YT6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031902.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5MM PEPTIDE SD; 50MM REMARK 210 PHOSPHATE BUFFER; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 2D ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, SPARKY 3 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 36 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 151.24 -35.76 REMARK 500 1 SER A 6 63.51 -165.98 REMARK 500 1 ASP A 7 -70.99 -44.94 REMARK 500 2 SER A 6 41.12 72.65 REMARK 500 2 PRO A 9 63.04 -69.06 REMARK 500 3 CYS A 2 -77.35 -86.11 REMARK 500 3 SER A 6 116.19 61.87 REMARK 500 3 ASP A 7 129.60 -177.67 REMARK 500 3 PRO A 9 88.96 -52.11 REMARK 500 4 CYS A 2 -168.68 -53.21 REMARK 500 4 SER A 6 108.34 62.11 REMARK 500 4 ASP A 7 125.10 -174.10 REMARK 500 5 CYS A 2 -78.26 -83.24 REMARK 500 5 SER A 6 -144.67 -164.45 REMARK 500 5 ASP A 7 -142.91 -127.35 REMARK 500 6 CYS A 2 101.66 -43.94 REMARK 500 6 SER A 6 76.35 -158.27 REMARK 500 6 ASP A 7 -122.50 -57.24 REMARK 500 7 SER A 6 -143.59 -146.73 REMARK 500 7 ASP A 7 -82.52 -111.51 REMARK 500 7 PRO A 9 -169.67 -77.13 REMARK 500 8 TRP A 5 31.38 -144.75 REMARK 500 8 SER A 6 -142.86 -173.86 REMARK 500 8 ASP A 7 -81.61 -118.71 REMARK 500 9 SER A 6 -145.20 -159.88 REMARK 500 9 ASP A 7 -85.77 -124.20 REMARK 500 10 SER A 6 101.02 60.63 REMARK 500 10 ASP A 7 118.63 -171.39 REMARK 500 11 SER A 6 50.83 -179.28 REMARK 500 11 ASP A 7 -82.76 -28.07 REMARK 500 12 CYS A 2 150.56 -36.04 REMARK 500 12 SER A 6 58.92 175.06 REMARK 500 13 SER A 6 99.99 -164.37 REMARK 500 14 CYS A 2 -36.69 -38.38 REMARK 500 14 TRP A 5 33.17 -144.11 REMARK 500 14 SER A 6 -144.57 -163.40 REMARK 500 14 ASP A 7 -69.34 -120.07 REMARK 500 15 SER A 6 -144.82 -162.63 REMARK 500 15 ASP A 7 -79.90 -145.96 REMARK 500 16 CYS A 2 152.28 -35.20 REMARK 500 16 SER A 6 21.52 -173.42 REMARK 500 16 ASP A 7 72.35 179.20 REMARK 500 17 SER A 6 -146.10 -130.31 REMARK 500 17 ASP A 7 -139.46 -133.56 REMARK 500 17 PRO A 9 91.58 -62.94 REMARK 500 18 CYS A 2 138.46 -36.28 REMARK 500 18 SER A 6 77.20 -159.40 REMARK 500 18 ASP A 7 -99.45 -52.31 REMARK 500 19 TRP A 5 34.66 -156.74 REMARK 500 19 SER A 6 -140.98 -168.05 REMARK 500 19 ASP A 7 88.26 -35.85 REMARK 500 20 CYS A 2 157.60 -38.95 REMARK 500 20 SER A 6 -143.63 -140.48 REMARK 500 20 ASP A 7 -79.68 -143.57 REMARK 500 21 CYS A 2 122.09 -33.25 REMARK 500 21 SER A 6 91.12 -164.35 REMARK 500 21 ASP A 7 -81.23 -55.15 REMARK 500 22 TRP A 5 38.95 -95.76 REMARK 500 22 SER A 6 55.70 168.08 REMARK 500 22 ASP A 7 -70.35 -28.45 REMARK 500 23 SER A 6 -144.81 -157.98 REMARK 500 23 ASP A 7 -83.27 -149.50 REMARK 500 24 TRP A 5 18.77 -152.16 REMARK 500 24 SER A 6 23.90 -160.08 REMARK 500 24 ASP A 7 90.92 -169.04 REMARK 500 25 CYS A 2 157.22 -38.56 REMARK 500 25 SER A 6 -144.39 -164.88 REMARK 500 25 ASP A 7 -83.22 -158.21 REMARK 500 26 CYS A 2 107.60 -33.25 REMARK 500 26 ASP A 7 -94.25 -44.24 REMARK 500 27 CYS A 2 145.04 -36.76 REMARK 500 27 SER A 6 -143.69 -121.13 REMARK 500 27 ASP A 7 85.08 -42.87 REMARK 500 27 PRO A 9 94.83 -47.76 REMARK 500 28 CYS A 2 117.99 -38.80 REMARK 500 28 SER A 6 -145.58 -126.53 REMARK 500 28 ASP A 7 -143.73 -130.91 REMARK 500 29 SER A 6 81.50 -152.66 REMARK 500 29 ASP A 7 -85.38 -48.68 REMARK 500 30 SER A 6 105.21 63.08 REMARK 500 30 ASP A 7 134.08 179.76 REMARK 500 31 SER A 6 100.73 58.74 REMARK 500 31 ASP A 7 134.03 179.87 REMARK 500 31 PRO A 9 -169.85 -72.61 REMARK 500 32 SER A 6 -139.93 -123.73 REMARK 500 32 ASP A 7 85.01 -47.05 REMARK 500 33 CYS A 2 -79.57 -84.49 REMARK 500 33 SER A 6 50.32 175.89 REMARK 500 33 ASP A 7 -71.66 -29.82 REMARK 500 34 CYS A 2 146.03 -35.42 REMARK 500 34 LEU A 3 109.42 -57.74 REMARK 500 34 TRP A 5 26.61 -142.93 REMARK 500 34 SER A 6 -139.57 -164.55 REMARK 500 34 ASP A 7 79.37 -51.91 REMARK 500 34 PRO A 9 77.72 -69.53 REMARK 500 35 CYS A 2 -177.03 -50.76 REMARK 500 35 LEU A 3 174.50 -57.98 REMARK 500 35 SER A 6 94.71 61.99 REMARK 500 35 ASP A 7 119.39 -162.41 REMARK 500 36 SER A 6 103.72 57.15 REMARK 500 36 ASP A 7 122.92 -177.78 REMARK 500 37 SER A 6 -146.18 -157.48 REMARK 500 37 ASP A 7 -85.52 -117.78 REMARK 500 38 SER A 6 -144.83 -162.04 REMARK 500 38 ASP A 7 -86.53 -135.95 REMARK 500 39 CYS A 2 -76.07 -33.27 REMARK 500 39 LEU A 3 108.18 -48.51 REMARK 500 39 SER A 6 -143.89 -163.62 REMARK 500 39 ASP A 7 -82.18 -129.38 REMARK 500 40 SER A 6 57.41 176.39 REMARK 500 40 ASP A 7 -73.04 -27.89 REMARK 500 40 PRO A 9 89.42 -62.67 REMARK 500 41 SER A 6 74.45 170.05 REMARK 500 42 CYS A 2 161.27 -40.52 REMARK 500 42 SER A 6 111.37 62.29 REMARK 500 42 ASP A 7 94.17 -179.87 REMARK 500 43 SER A 6 78.31 -164.11 REMARK 500 43 ASP A 7 -69.39 -19.44 REMARK 500 44 SER A 6 -143.28 -162.96 REMARK 500 44 ASP A 7 -76.48 -113.89 REMARK 500 45 TRP A 5 34.66 -161.16 REMARK 500 45 SER A 6 18.42 -164.18 REMARK 500 45 ASP A 7 81.17 179.55 REMARK 500 46 CYS A 2 133.50 -35.68 REMARK 500 46 LEU A 3 107.80 -52.38 REMARK 500 46 TRP A 5 28.02 -141.13 REMARK 500 46 SER A 6 -143.57 -157.75 REMARK 500 46 ASP A 7 83.28 -59.28 REMARK 500 47 ASP A 7 -82.18 -40.62 REMARK 500 48 SER A 6 -145.23 -152.83 REMARK 500 48 ASP A 7 -80.17 -130.88 REMARK 500 49 SER A 6 73.29 59.32 REMARK 500 49 ASP A 7 -151.32 -162.86 REMARK 500 50 SER A 6 -146.26 -154.49 REMARK 500 50 ASP A 7 -77.17 -140.94 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1YT6 A 1 10 PDB 1YT6 1YT6 1 10
SEQRES 1 A 10 ALA CYS LEU PRO TRP SER ASP GLY PRO CYS
SSBOND 1 CYS A 2 CYS A 10 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000