10 20 30 40 50 60 70 80 1YSM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 08-FEB-05 1YSM
TITLE NMR STRUCTURE OF N-TERMINAL DOMAIN (RESIDUES 1-77) OF SIAH- TITLE 2 INTERACTING PROTEIN.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCYCLIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: CACYBP, SIAH-INTERACTING PROTEIN, SIP; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CACYBP, SIP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28
KEYWDS HELIX-TURN-HELIX, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.BHATTACHARYA,Y.T.LEE,W.MICHOWSKI,B.JASTRZEBSKA,A.FILIPEK, AUTHOR 2 J.KUZNICKI,W.J.CHAZIN
REVDAT 2 24-FEB-09 1YSM 1 VERSN REVDAT 1 26-JUL-05 1YSM 0
JRNL AUTH S.BHATTACHARYA,Y.T.LEE,W.MICHOWSKI,B.JASTRZEBSKA, JRNL AUTH 2 A.FILIPEK,J.KUZNICKI,W.J.CHAZIN JRNL TITL THE MODULAR STRUCTURE OF SIP FACILITATES ITS ROLE JRNL TITL 2 IN STABILIZING MULTIPROTEIN ASSEMBLIES. JRNL REF BIOCHEMISTRY V. 44 9462 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15996101 JRNL DOI 10.1021/BI0502689
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : PEARLMAN, D. A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YSM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031884.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 MM NAPI, 50 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM 15N/13C-ENRICHED SIP(1- REMARK 210 77), 20 MM NAPI, 50 MM NACL; 1 REMARK 210 MM 15N-ENRICHED SIP(1-77), 20 REMARK 210 MM NAPI, 50 MM NACL; 1 MM U- REMARK 210 SIP(1-77), 20 MM NAPI, 50 MM REMARK 210 NACL; 1 MM 13C-ENRICHED SIP(1- REMARK 210 77), 20 MM NAPI, 50 MM NACL; 1 REMARK 210 MM 10% 13C-ENRICHED SIP(1-77), REMARK 210 20 MM NAPI, 50 MM NACL; 1 MM U REMARK 210 -SIP(1-77), 20 MM NAPI, 50 MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 4D_13C/ REMARK 210 15N-SEPARATED_NOESY, 4D_13C- REMARK 210 SEPARATED_NOESY, HNHA, HNHB, REMARK 210 3D-HACAHB-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.0, FELIX 2000, SANE REMARK 210 1.0, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 SIMULATED ANNEALING RESTRAINED REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY, LEAST RESTRAINT REMARK 210 VIOLATIONS AND LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: STEREOSPECIFIC METHYL GROUP ASSIGNMENTS WERE MADE WITH REMARK 210 10% 13C-ENRICHED SIP(1-77) SAMPLE.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 56 REMARK 465 ASP A 57 REMARK 465 ASN A 58 REMARK 465 GLU A 59 REMARK 465 LYS A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 ALA A 63 REMARK 465 VAL A 64 REMARK 465 VAL A 65 REMARK 465 ALA A 66 REMARK 465 PRO A 67 REMARK 465 LEU A 68 REMARK 465 THR A 69 REMARK 465 THR A 70 REMARK 465 GLY A 71 REMARK 465 TYR A 72 REMARK 465 THR A 73 REMARK 465 VAL A 74 REMARK 465 LYS A 75 REMARK 465 ILE A 76 REMARK 465 SER A 77
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 18 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 -37.37 63.10 REMARK 500 1 ARG A 26 -38.11 -33.66 REMARK 500 1 LYS A 49 -83.78 -84.13 REMARK 500 1 SER A 50 28.80 43.16 REMARK 500 2 THR A 23 12.06 -65.72 REMARK 500 2 LYS A 25 -43.54 70.70 REMARK 500 2 GLN A 47 64.91 -160.11 REMARK 500 3 THR A 23 37.89 -65.57 REMARK 500 3 LYS A 49 -130.47 86.44 REMARK 500 3 GLN A 51 -71.89 63.02 REMARK 500 3 LYS A 52 -69.67 60.23 REMARK 500 4 LYS A 21 -70.71 -73.63 REMARK 500 4 THR A 23 42.77 -73.01 REMARK 500 5 THR A 23 45.16 -72.43 REMARK 500 5 GLN A 48 -69.81 59.14 REMARK 500 5 SER A 50 47.86 -76.18 REMARK 500 6 SER A 22 48.44 -82.89 REMARK 500 6 THR A 23 26.87 -71.66 REMARK 500 6 LYS A 25 -40.12 -172.02 REMARK 500 6 MET A 46 -72.69 -69.94 REMARK 500 6 SER A 50 -37.99 66.56 REMARK 500 7 THR A 23 42.80 -68.55 REMARK 500 7 MET A 46 -70.46 -63.01 REMARK 500 7 GLN A 48 -34.10 67.76 REMARK 500 8 THR A 23 38.44 -67.39 REMARK 500 8 MET A 46 -70.96 -91.03 REMARK 500 8 SER A 50 -80.88 60.03 REMARK 500 8 LYS A 53 83.43 62.70 REMARK 500 9 THR A 23 38.93 -72.61 REMARK 500 9 SER A 50 45.80 -76.60 REMARK 500 10 SER A 22 47.51 -74.90 REMARK 500 10 LYS A 25 -48.39 73.15 REMARK 500 10 ARG A 26 -7.84 -57.90 REMARK 500 10 GLN A 48 -80.26 55.96 REMARK 500 10 LYS A 49 -57.92 64.19 REMARK 500 10 LYS A 52 45.67 -76.82 REMARK 500 10 LYS A 53 146.45 177.12 REMARK 500 11 THR A 23 -55.03 71.66 REMARK 500 11 LYS A 25 -35.08 73.50 REMARK 500 11 GLN A 48 41.10 -75.07 REMARK 500 11 GLN A 51 -51.37 -145.09 REMARK 500 12 LYS A 21 -72.59 -79.64 REMARK 500 12 THR A 23 38.21 -76.59 REMARK 500 12 GLN A 51 -45.33 72.77 REMARK 500 12 LYS A 52 -68.10 -122.60 REMARK 500 13 THR A 23 -32.22 70.18 REMARK 500 13 ARG A 24 150.17 -44.11 REMARK 500 13 LYS A 25 4.54 -60.78 REMARK 500 13 GLN A 48 105.20 -57.03 REMARK 500 13 LYS A 52 79.34 -67.67 REMARK 500 13 PRO A 54 92.53 -65.99 REMARK 500 14 LYS A 25 -34.96 64.54 REMARK 500 14 ARG A 26 -39.10 -36.44 REMARK 500 14 MET A 46 -68.10 -90.73 REMARK 500 14 SER A 50 -173.00 157.08 REMARK 500 15 THR A 23 -28.03 66.05 REMARK 500 15 ARG A 24 -175.76 -65.94 REMARK 500 15 GLN A 47 48.09 -163.69 REMARK 500 15 LYS A 49 77.86 -64.37 REMARK 500 15 GLN A 51 -52.96 68.91 REMARK 500 16 THR A 23 -19.50 -47.51 REMARK 500 16 LYS A 25 -44.21 71.09 REMARK 500 16 LYS A 49 -65.14 68.01 REMARK 500 16 PRO A 54 66.44 -62.63 REMARK 500 17 LYS A 49 -54.47 -147.93 REMARK 500 18 THR A 23 40.58 -74.85 REMARK 500 18 GLN A 48 -71.29 69.61 REMARK 500 19 THR A 23 -52.17 68.42 REMARK 500 19 LYS A 25 15.04 -60.91 REMARK 500 19 GLN A 47 10.40 -142.38 REMARK 500 19 GLN A 48 -87.04 54.88 REMARK 500 19 GLN A 51 -68.47 34.19 REMARK 500 20 THR A 23 28.76 -73.43 REMARK 500 20 ARG A 26 -38.68 -37.73 REMARK 500 20 GLN A 48 -136.67 48.74 REMARK 500 20 GLN A 51 39.10 37.09 REMARK 500 20 LYS A 52 -68.92 70.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 26 0.08 SIDE_CHAIN REMARK 500 2 ARG A 24 0.10 SIDE_CHAIN REMARK 500 5 ARG A 26 0.11 SIDE_CHAIN REMARK 500 6 ARG A 24 0.13 SIDE_CHAIN REMARK 500 8 ARG A 28 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1YSM A 1 77 UNP Q9CXW3 CYBP_MOUSE 1 77
SEQRES 1 A 77 MET ALA SER VAL LEU GLU GLU LEU GLN LYS ASP LEU GLU SEQRES 2 A 77 GLU VAL LYS VAL LEU LEU GLU LYS SER THR ARG LYS ARG SEQRES 3 A 77 LEU ARG ASP THR LEU THR SER GLU LYS SER LYS ILE GLU SEQRES 4 A 77 THR GLU LEU LYS ASN LYS MET GLN GLN LYS SER GLN LYS SEQRES 5 A 77 LYS PRO GLU LEU ASP ASN GLU LYS PRO ALA ALA VAL VAL SEQRES 6 A 77 ALA PRO LEU THR THR GLY TYR THR VAL LYS ILE SER
HELIX 1 1 MET A 1 SER A 22 1 22 HELIX 2 2 ARG A 26 GLN A 48 1 23
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000