10 20 30 40 50 60 70 80 1YRN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN/DNA 02-NOV-95 1YRN
TITLE CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN TITLE 2 HETERODIMER BOUND TO DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*TP*AP*TP*TP*AP*C COMPND 4 P*AP*TP*CP*A)-3'); COMPND 5 CHAIN: C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*TP*AP*AP*AP*TP*TP*A COMPND 10 P*CP*AP*TP*G)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (MAT A1 HOMEODOMAIN); COMPND 15 CHAIN: A; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: PROTEIN (MAT ALPHA2 HOMEODOMAIN); COMPND 19 CHAIN: B; COMPND 20 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: MAT A1 RESIDUE 66-126; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMS/K66; SOURCE 13 EXPRESSION_SYSTEM_GENE: MAT A1 RESIDUE 66-126; SOURCE 14 OTHER_DETAILS: T7 PROMOTER; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 18 ORGANISM_TAXID: 4932; SOURCE 19 GENE: MAT ALPHA2 RESIDUE 128-210; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PAV105; SOURCE 23 EXPRESSION_SYSTEM_GENE: MAT ALPHA2 RESIDUE 128-210; SOURCE 24 OTHER_DETAILS: TAC PROMOTER
KEYWDS COMPLEX, DNA-BINDING PROTEIN, DNA, DNA BINDING PROTEIN/DNA KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR T.LI,M.R.STARK,A.D.JOHNSON,C.WOLBERGER
REVDAT 2 24-FEB-09 1YRN 1 VERSN REVDAT 1 29-JAN-96 1YRN 0
JRNL AUTH T.LI,M.R.STARK,A.D.JOHNSON,C.WOLBERGER JRNL TITL CRYSTAL STRUCTURE OF THE MATA1/MAT ALPHA 2 JRNL TITL 2 HOMEODOMAIN HETERODIMER BOUND TO DNA. JRNL REF SCIENCE V. 270 262 1995 JRNL REFN ISSN 0036-8075 JRNL PMID 7569974
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.LI,M.STARK,A.D.JOHNSON,C.WOLBERGER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 STUDIES OF AN A1/ALPHA2/DNA TERNARY COMPLEX REMARK 1 REF PROTEINS V. 21 161 1995 REMARK 1 REFN ISSN 0887-3585
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 14624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 996 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.93 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YRN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-94 REMARK 200 TEMPERATURE (KELVIN) : 94.00 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.28667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.57333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.93000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.21667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.64333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 LYS A 69 REMARK 465 SER A 70 REMARK 465 PRO A 71 REMARK 465 LYS A 72 REMARK 465 GLY A 73 REMARK 465 LYS A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 LYS A 126 REMARK 465 ALA B 206 REMARK 465 LYS B 207 REMARK 465 LYS B 208 REMARK 465 LYS B 209 REMARK 465 GLU B 210
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 SER A 94 OG REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 SER A 125 OG REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 ASN B 164 CG OD1 ND2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 THR B 189 OG1 CG2 REMARK 470 ILE B 190 CG1 CG2 CD1 REMARK 470 ASP B 198 CG OD1 OD2 REMARK 470 SER B 201 OG REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 LEU B 205 CG CD1 CD2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 3 O3' DC C 3 C3' -0.046 REMARK 500 DT C 11 C6 DT C 11 N1 -0.050 REMARK 500 DT C 12 C4' DT C 12 C3' -0.067 REMARK 500 DT D 22 C4' DT D 22 C3' -0.060 REMARK 500 DT D 22 C5 DT D 22 C7 0.043 REMARK 500 DA D 26 C5' DA D 26 C4' 0.063 REMARK 500 DA D 35 C5 DA D 35 N7 0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 2 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 5 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 7.3 DEGREES REMARK 500 DT C 10 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT C 11 O4' - C1' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT C 11 C6 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 12 O4' - C4' - C3' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT C 12 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT C 12 C4 - C5 - C6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT C 12 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = -6.0 DEGREES REMARK 500 DC C 17 O4' - C4' - C3' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC C 17 C1' - O4' - C4' ANGL. DEV. = -9.3 DEGREES REMARK 500 DT C 19 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT C 19 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 19 C4 - C5 - C6 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT C 19 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA C 18 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC C 20 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 DA C 21 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 23 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 24 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 24 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT D 24 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG D 25 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA D 26 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 27 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT D 29 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 29 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT D 32 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT D 32 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA D 34 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 DA D 34 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 33 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DA D 35 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 36 C4 - C5 - C6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 36 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT D 37 C4 - C5 - C6 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC D 39 O4' - C1' - C2' ANGL. DEV. = -8.1 DEGREES REMARK 500 DA D 38 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DA D 40 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 41 C4 - C5 - C6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT D 41 C6 - C5 - C7 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 170 -0.85 64.82 REMARK 500 SER B 201 -82.78 -34.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 1 0.08 SIDE_CHAIN REMARK 500 DA C 2 0.06 SIDE_CHAIN REMARK 500 DC C 3 0.10 SIDE_CHAIN REMARK 500 DT C 10 0.08 SIDE_CHAIN REMARK 500 DT C 15 0.07 SIDE_CHAIN REMARK 500 DC C 20 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1YRN A 66 126 UNP P01366 MATA1_YEAST 66 126 DBREF 1YRN B 128 210 UNP Q6B2C0 MTAL2_YEAST 128 210 DBREF 1YRN C 1 21 PDB 1YRN 1YRN 1 21 DBREF 1YRN D 22 42 PDB 1YRN 1YRN 22 42
SEQRES 1 C 21 DT DA DC DA DT DG DT DA DA DT DT DT DA SEQRES 2 C 21 DT DT DA DC DA DT DC DA SEQRES 1 D 21 DT DA DT DG DA DT DG DT DA DA DT DA DA SEQRES 2 D 21 DA DT DT DA DC DA DT DG SEQRES 1 A 61 LYS LYS GLU LYS SER PRO LYS GLY LYS SER SER ILE SER SEQRES 2 A 61 PRO GLN ALA ARG ALA PHE LEU GLU GLN VAL PHE ARG ARG SEQRES 3 A 61 LYS GLN SER LEU ASN SER LYS GLU LYS GLU GLU VAL ALA SEQRES 4 A 61 LYS LYS CYS GLY ILE THR PRO LEU GLN VAL ARG VAL TRP SEQRES 5 A 61 PHE ILE ASN LYS ARG MET ARG SER LYS SEQRES 1 B 83 THR LYS PRO TYR ARG GLY HIS ARG PHE THR LYS GLU ASN SEQRES 2 B 83 VAL ARG ILE LEU GLU SER TRP PHE ALA LYS ASN ILE GLU SEQRES 3 B 83 ASN PRO TYR LEU ASP THR LYS GLY LEU GLU ASN LEU MET SEQRES 4 B 83 LYS ASN THR SER LEU SER ARG ILE GLN ILE LYS ASN TRP SEQRES 5 B 83 VAL SER ASN ARG ARG ARG LYS GLU LYS THR ILE THR ILE SEQRES 6 B 83 ALA PRO GLU LEU ALA ASP LEU LEU SER GLY GLU PRO LEU SEQRES 7 B 83 ALA LYS LYS LYS GLU
FORMUL 5 HOH *58(H2 O)
HELIX 1 1 PRO A 79 ARG A 91 1 13 HELIX 2 2 SER A 97 CYS A 107 1 11 HELIX 3 3 PRO A 111 ARG A 124 1 14 HELIX 4 4 LYS B 138 LYS B 150 1 13 HELIX 5 5 ILE B 152 ASN B 154 5 3 HELIX 6 6 THR B 159 LYS B 167 1 9 HELIX 7 7 ARG B 173 THR B 189 1 17 HELIX 8 8 PRO B 194 LEU B 200 1 7
CRYST1 132.380 132.380 45.860 90.00 90.00 120.00 P 61 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007554 0.004361 0.000000 0.00000
SCALE2 0.000000 0.008723 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021805 0.00000