10 20 30 40 50 60 70 80 1YQZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 02-FEB-05 1YQZ
TITLE STRUCTURE OF COENZYME A-DISULFIDE REDUCTASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS REFINED AT 1.54 ANGSTROM RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME A DISULFIDE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PXCDR
KEYWDS OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.C.MALLETT,J.R.WALLEN,H.SAKAI,J.LUBA,D.PARSONAGE, AUTHOR 2 P.A.KARPLUS,T.TSUKIHARA,A.CLAIBORNE
REVDAT 3 24-FEB-09 1YQZ 1 VERSN REVDAT 2 31-OCT-06 1YQZ 1 JRNL REVDAT 1 09-MAY-06 1YQZ 0
JRNL AUTH T.C.MALLETT,J.R.WALLEN,P.A.KARPLUS,H.SAKAI, JRNL AUTH 2 T.TSUKIHARA,A.CLAIBORNE JRNL TITL STRUCTURE OF COENZYME A-DISULFIDE REDUCTASE FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS AT 1.54 A RESOLUTION. JRNL REF BIOCHEMISTRY V. 45 11278 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16981688 JRNL DOI 10.1021/BI061139A
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 256436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 12559 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1533 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 242 REMARK 3 SOLVENT ATOMS : 1363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : 4.30000 REMARK 3 B33 (A**2) : -3.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1YQZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB031829.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; SPRING-8 REMARK 200 BEAMLINE : X26C; BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100; 0.9762, 0.9799, 0.9000 REMARK 200 MONOCHROMATOR : SI 111; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 256436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.180 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.83 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, MAGNESIUM CHLORIDE, HEPES, REMARK 280 NADP+, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.60000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER, AND THE BIOLOGICAL REMARK 300 DIMER IS FOUND IN THE ASYMMETRIC UNIT. EACH MONOMER SUBUNIT REMARK 300 CONTAINS ONE NON-COVALENTLY BOUND FAD AND ONE COVALENTLY BOUND REMARK 300 COA MOIETY.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 -124.73 -128.71 REMARK 500 ASP A 55 99.81 -58.99 REMARK 500 ARG A 131 -30.98 -142.89 REMARK 500 ASP A 149 -65.40 -122.87 REMARK 500 ASN A 184 60.73 36.26 REMARK 500 SER A 281 -139.22 -138.98 REMARK 500 PHE A 329 -123.40 53.67 REMARK 500 PRO A 363 152.33 -48.05 REMARK 500 SER A 424 -151.47 -168.77 REMARK 500 VAL B 10 -127.55 -129.45 REMARK 500 ARG B 131 -32.26 -138.27 REMARK 500 ASN B 184 61.73 35.58 REMARK 500 VAL B 237 46.77 -108.39 REMARK 500 SER B 281 -136.17 -141.75 REMARK 500 PHE B 329 -124.14 53.79 REMARK 500 PRO B 363 164.94 -44.94 REMARK 500 SER B 424 -152.11 -167.78 REMARK 500 ALA B 437 -106.09 -51.87 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3174 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH A3220 DISTANCE = 11.47 ANGSTROMS REMARK 525 HOH A3238 DISTANCE = 10.67 ANGSTROMS REMARK 525 HOH A3240 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A3246 DISTANCE = 9.99 ANGSTROMS REMARK 525 HOH B3248 DISTANCE = 9.16 ANGSTROMS REMARK 525 HOH B3257 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A3360 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH A3389 DISTANCE = 9.91 ANGSTROMS REMARK 525 HOH A3397 DISTANCE = 11.94 ANGSTROMS REMARK 525 HOH A3424 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A3451 DISTANCE = 9.92 ANGSTROMS REMARK 525 HOH A3501 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A3518 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A3524 DISTANCE = 9.46 ANGSTROMS REMARK 525 HOH A3528 DISTANCE = 10.13 ANGSTROMS REMARK 525 HOH A3608 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A3641 DISTANCE = 13.45 ANGSTROMS REMARK 525 HOH A3694 DISTANCE = 9.95 ANGSTROMS REMARK 525 HOH A3715 DISTANCE = 8.84 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3433 O REMARK 620 2 HOH A3546 O 87.7 REMARK 620 3 HOH A3439 O 93.8 175.9 REMARK 620 4 HOH A3313 O 169.1 88.4 90.7 REMARK 620 5 HOH A3416 O 95.7 85.7 90.3 94.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B3075 O REMARK 620 2 HOH B3110 O 88.5 REMARK 620 3 HOH B3133 O 177.2 92.5 REMARK 620 4 HOH A3116 O 84.5 87.6 98.1 REMARK 620 5 HOH A3072 O 93.2 175.2 86.0 88.0 REMARK 620 6 HOH A3090 O 88.0 88.6 89.5 171.7 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B3183 O REMARK 620 2 HOH A3371 O 172.0 REMARK 620 3 HOH A3188 O 97.8 89.3 REMARK 620 4 HOH A3601 O 95.1 82.1 82.8 REMARK 620 5 HOH B3251 O 82.8 90.1 178.8 98.2 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3001 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3002 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3003 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 3004 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3005 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 3006 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 441 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 442 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 439 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 440
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THERE IS AN ERROR IN THE REMARK 999 DATABASE SEQUENCE.
DBREF 1YQZ A 1 438 UNP O52582 CDR_STAA8 1 438 DBREF 1YQZ B 1 438 UNP O52582 CDR_STAA8 1 438
SEQADV 1YQZ TYR A 168 UNP O52582 ASN 168 SEE REMARK 999 SEQADV 1YQZ TYR B 168 UNP O52582 ASN 168 SEE REMARK 999
SEQRES 1 A 438 MET PRO LYS ILE VAL VAL VAL GLY ALA VAL ALA GLY GLY SEQRES 2 A 438 ALA THR CYS ALA SER GLN ILE ARG ARG LEU ASP LYS GLU SEQRES 3 A 438 SER ASP ILE ILE ILE PHE GLU LYS ASP ARG ASP MET SER SEQRES 4 A 438 PHE ALA ASN CYS ALA LEU PRO TYR VAL ILE GLY GLU VAL SEQRES 5 A 438 VAL GLU ASP ARG ARG TYR ALA LEU ALA TYR THR PRO GLU SEQRES 6 A 438 LYS PHE TYR ASP ARG LYS GLN ILE THR VAL LYS THR TYR SEQRES 7 A 438 HIS GLU VAL ILE ALA ILE ASN ASP GLU ARG GLN THR VAL SEQRES 8 A 438 SER VAL LEU ASN ARG LYS THR ASN GLU GLN PHE GLU GLU SEQRES 9 A 438 SER TYR ASP LYS LEU ILE LEU SER PRO GLY ALA SER ALA SEQRES 10 A 438 ASN SER LEU GLY PHE GLU SER ASP ILE THR PHE THR LEU SEQRES 11 A 438 ARG ASN LEU GLU ASP THR ASP ALA ILE ASP GLN PHE ILE SEQRES 12 A 438 LYS ALA ASN GLN VAL ASP LYS VAL LEU VAL VAL GLY ALA SEQRES 13 A 438 GLY TYR VAL SER LEU GLU VAL LEU GLU ASN LEU TYR GLU SEQRES 14 A 438 ARG GLY LEU HIS PRO THR LEU ILE HIS ARG SER ASP LYS SEQRES 15 A 438 ILE ASN LYS LEU MET ASP ALA ASP MET ASN GLN PRO ILE SEQRES 16 A 438 LEU ASP GLU LEU ASP LYS ARG GLU ILE PRO TYR ARG LEU SEQRES 17 A 438 ASN GLU GLU ILE ASN ALA ILE ASN GLY ASN GLU ILE THR SEQRES 18 A 438 PHE LYS SER GLY LYS VAL GLU HIS TYR ASP MET ILE ILE SEQRES 19 A 438 GLU GLY VAL GLY THR HIS PRO ASN SER LYS PHE ILE GLU SEQRES 20 A 438 SER SER ASN ILE LYS LEU ASP ARG LYS GLY PHE ILE PRO SEQRES 21 A 438 VAL ASN ASP LYS PHE GLU THR ASN VAL PRO ASN ILE TYR SEQRES 22 A 438 ALA ILE GLY ASP ILE ALA THR SER HIS TYR ARG HIS VAL SEQRES 23 A 438 ASP LEU PRO ALA SER VAL PRO LEU ALA TRP GLY ALA HIS SEQRES 24 A 438 ARG ALA ALA SER ILE VAL ALA GLU GLN ILE ALA GLY ASN SEQRES 25 A 438 ASP THR ILE GLU PHE LYS GLY PHE LEU GLY ASN ASN ILE SEQRES 26 A 438 VAL LYS PHE PHE ASP TYR THR PHE ALA SER VAL GLY VAL SEQRES 27 A 438 LYS PRO ASN GLU LEU LYS GLN PHE ASP TYR LYS MET VAL SEQRES 28 A 438 GLU VAL THR GLN GLY ALA HIS ALA ASN TYR TYR PRO GLY SEQRES 29 A 438 ASN SER PRO LEU HIS LEU ARG VAL TYR TYR ASP THR SER SEQRES 30 A 438 ASN ARG GLN ILE LEU ARG ALA ALA ALA VAL GLY LYS GLU SEQRES 31 A 438 GLY ALA ASP LYS ARG ILE ASP VAL LEU SER MET ALA MET SEQRES 32 A 438 MET ASN GLN LEU THR VAL ASP GLU LEU THR GLU PHE GLU SEQRES 33 A 438 VAL ALA TYR ALA PRO PRO TYR SER HIS PRO LYS ASP LEU SEQRES 34 A 438 ILE ASN MET ILE GLY TYR LYS ALA LYS SEQRES 1 B 438 MET PRO LYS ILE VAL VAL VAL GLY ALA VAL ALA GLY GLY SEQRES 2 B 438 ALA THR CYS ALA SER GLN ILE ARG ARG LEU ASP LYS GLU SEQRES 3 B 438 SER ASP ILE ILE ILE PHE GLU LYS ASP ARG ASP MET SER SEQRES 4 B 438 PHE ALA ASN CYS ALA LEU PRO TYR VAL ILE GLY GLU VAL SEQRES 5 B 438 VAL GLU ASP ARG ARG TYR ALA LEU ALA TYR THR PRO GLU SEQRES 6 B 438 LYS PHE TYR ASP ARG LYS GLN ILE THR VAL LYS THR TYR SEQRES 7 B 438 HIS GLU VAL ILE ALA ILE ASN ASP GLU ARG GLN THR VAL SEQRES 8 B 438 SER VAL LEU ASN ARG LYS THR ASN GLU GLN PHE GLU GLU SEQRES 9 B 438 SER TYR ASP LYS LEU ILE LEU SER PRO GLY ALA SER ALA SEQRES 10 B 438 ASN SER LEU GLY PHE GLU SER ASP ILE THR PHE THR LEU SEQRES 11 B 438 ARG ASN LEU GLU ASP THR ASP ALA ILE ASP GLN PHE ILE SEQRES 12 B 438 LYS ALA ASN GLN VAL ASP LYS VAL LEU VAL VAL GLY ALA SEQRES 13 B 438 GLY TYR VAL SER LEU GLU VAL LEU GLU ASN LEU TYR GLU SEQRES 14 B 438 ARG GLY LEU HIS PRO THR LEU ILE HIS ARG SER ASP LYS SEQRES 15 B 438 ILE ASN LYS LEU MET ASP ALA ASP MET ASN GLN PRO ILE SEQRES 16 B 438 LEU ASP GLU LEU ASP LYS ARG GLU ILE PRO TYR ARG LEU SEQRES 17 B 438 ASN GLU GLU ILE ASN ALA ILE ASN GLY ASN GLU ILE THR SEQRES 18 B 438 PHE LYS SER GLY LYS VAL GLU HIS TYR ASP MET ILE ILE SEQRES 19 B 438 GLU GLY VAL GLY THR HIS PRO ASN SER LYS PHE ILE GLU SEQRES 20 B 438 SER SER ASN ILE LYS LEU ASP ARG LYS GLY PHE ILE PRO SEQRES 21 B 438 VAL ASN ASP LYS PHE GLU THR ASN VAL PRO ASN ILE TYR SEQRES 22 B 438 ALA ILE GLY ASP ILE ALA THR SER HIS TYR ARG HIS VAL SEQRES 23 B 438 ASP LEU PRO ALA SER VAL PRO LEU ALA TRP GLY ALA HIS SEQRES 24 B 438 ARG ALA ALA SER ILE VAL ALA GLU GLN ILE ALA GLY ASN SEQRES 25 B 438 ASP THR ILE GLU PHE LYS GLY PHE LEU GLY ASN ASN ILE SEQRES 26 B 438 VAL LYS PHE PHE ASP TYR THR PHE ALA SER VAL GLY VAL SEQRES 27 B 438 LYS PRO ASN GLU LEU LYS GLN PHE ASP TYR LYS MET VAL SEQRES 28 B 438 GLU VAL THR GLN GLY ALA HIS ALA ASN TYR TYR PRO GLY SEQRES 29 B 438 ASN SER PRO LEU HIS LEU ARG VAL TYR TYR ASP THR SER SEQRES 30 B 438 ASN ARG GLN ILE LEU ARG ALA ALA ALA VAL GLY LYS GLU SEQRES 31 B 438 GLY ALA ASP LYS ARG ILE ASP VAL LEU SER MET ALA MET SEQRES 32 B 438 MET ASN GLN LEU THR VAL ASP GLU LEU THR GLU PHE GLU SEQRES 33 B 438 VAL ALA TYR ALA PRO PRO TYR SER HIS PRO LYS ASP LEU SEQRES 34 B 438 ILE ASN MET ILE GLY TYR LYS ALA LYS
HET MG B2001 1 HET MG A2002 1 HET MG B2003 1 HET CL A3001 1 HET CL A3002 1 HET CL A3003 1 HET CL B3004 1 HET CL A3005 1 HET CL B3006 1 HET COA A 441 48 HET COA B 442 79 HET FAD A 439 53 HET FAD B 440 53
HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM COA COENZYME A HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE
FORMUL 3 MG 3(MG 2+) FORMUL 6 CL 6(CL 1-) FORMUL 12 COA 2(C21 H36 N7 O16 P3 S) FORMUL 14 FAD 2(C27 H33 N9 O15 P2) FORMUL 16 HOH *1363(H2 O)
HELIX 1 1 GLY A 12 ASP A 24 1 13 HELIX 2 2 ALA A 41 CYS A 43 5 3 HELIX 3 3 ALA A 44 GLY A 50 1 7 HELIX 4 4 ASP A 55 LEU A 60 5 6 HELIX 5 5 THR A 63 GLN A 72 1 10 HELIX 6 6 ASN A 132 GLN A 147 1 16 HELIX 7 7 GLY A 157 GLY A 171 1 15 HELIX 8 8 ASP A 188 MET A 191 5 4 HELIX 9 9 ASN A 192 ARG A 202 1 11 HELIX 10 10 SER A 243 GLU A 247 5 5 HELIX 11 11 LEU A 294 GLY A 311 1 18 HELIX 12 12 LYS A 339 PHE A 346 5 8 HELIX 13 13 GLY A 391 ASN A 405 1 15 HELIX 14 14 VAL A 409 PHE A 415 5 7 HELIX 15 15 ASP A 428 LYS A 436 1 9 HELIX 16 16 GLY B 12 ASP B 24 1 13 HELIX 17 17 ALA B 41 CYS B 43 5 3 HELIX 18 18 ALA B 44 GLY B 50 1 7 HELIX 19 19 ASP B 55 LEU B 60 1 6 HELIX 20 20 THR B 63 GLN B 72 1 10 HELIX 21 21 ASN B 132 GLN B 147 1 16 HELIX 22 22 GLY B 157 GLY B 171 1 15 HELIX 23 23 ASP B 188 MET B 191 5 4 HELIX 24 24 ASN B 192 ARG B 202 1 11 HELIX 25 25 SER B 243 GLU B 247 5 5 HELIX 26 26 LEU B 294 GLY B 311 1 18 HELIX 27 27 LYS B 339 PHE B 346 5 8 HELIX 28 28 GLY B 391 ASN B 405 1 15 HELIX 29 29 VAL B 409 PHE B 415 5 7 HELIX 30 30 ASP B 428 ALA B 437 1 10
SHEET 1 A 5 THR A 74 THR A 77 0 SHEET 2 A 5 ILE A 29 GLU A 33 1 N ILE A 31 O LYS A 76 SHEET 3 A 5 ILE A 4 VAL A 7 1 N ILE A 4 O ILE A 30 SHEET 4 A 5 LYS A 108 LEU A 111 1 O ILE A 110 N VAL A 7 SHEET 5 A 5 ILE A 272 ALA A 274 1 O TYR A 273 N LEU A 109 SHEET 1 B 3 HIS A 79 ASN A 85 0 SHEET 2 B 3 THR A 90 ASN A 95 -1 O LEU A 94 N GLU A 80 SHEET 3 B 3 GLU A 100 SER A 105 -1 O PHE A 102 N VAL A 93 SHEET 1 C 2 ALA A 115 ALA A 117 0 SHEET 2 C 2 THR A 239 PRO A 241 -1 O HIS A 240 N SER A 116 SHEET 1 D 5 THR A 127 PHE A 128 0 SHEET 2 D 5 MET A 232 GLU A 235 1 O GLU A 235 N PHE A 128 SHEET 3 D 5 LYS A 150 VAL A 154 1 N LEU A 152 O ILE A 234 SHEET 4 D 5 HIS A 173 HIS A 178 1 O THR A 175 N VAL A 153 SHEET 5 D 5 TYR A 206 LEU A 208 1 O ARG A 207 N LEU A 176 SHEET 1 E 3 ILE A 212 ASN A 216 0 SHEET 2 E 3 GLU A 219 PHE A 222 -1 O THR A 221 N ASN A 213 SHEET 3 E 3 VAL A 227 HIS A 229 -1 O GLU A 228 N ILE A 220 SHEET 1 F 3 ILE A 259 PRO A 260 0 SHEET 2 F 3 ALA A 279 HIS A 282 1 O THR A 280 N ILE A 259 SHEET 3 F 3 PRO A 289 ALA A 290 -1 O ALA A 290 N SER A 281 SHEET 1 G 5 ASN A 324 PHE A 328 0 SHEET 2 G 5 TYR A 331 GLY A 337 -1 O TYR A 331 N PHE A 328 SHEET 3 G 5 ILE A 381 GLY A 388 -1 O ALA A 386 N ALA A 334 SHEET 4 G 5 PRO A 367 ASP A 375 -1 N TYR A 373 O ARG A 383 SHEET 5 G 5 TYR A 348 GLY A 356 -1 N VAL A 351 O VAL A 372 SHEET 1 H 5 THR B 74 LYS B 76 0 SHEET 2 H 5 ILE B 29 PHE B 32 1 N ILE B 31 O LYS B 76 SHEET 3 H 5 ILE B 4 VAL B 7 1 N VAL B 6 O PHE B 32 SHEET 4 H 5 LYS B 108 LEU B 111 1 O ILE B 110 N VAL B 5 SHEET 5 H 5 ILE B 272 ALA B 274 1 O TYR B 273 N LEU B 109 SHEET 1 I 3 HIS B 79 ASN B 85 0 SHEET 2 I 3 THR B 90 ASN B 95 -1 O LEU B 94 N GLU B 80 SHEET 3 I 3 GLU B 100 SER B 105 -1 O PHE B 102 N VAL B 93 SHEET 1 J 2 ALA B 115 ALA B 117 0 SHEET 2 J 2 THR B 239 PRO B 241 -1 O HIS B 240 N SER B 116 SHEET 1 K 5 THR B 127 PHE B 128 0 SHEET 2 K 5 MET B 232 GLU B 235 1 O GLU B 235 N PHE B 128 SHEET 3 K 5 LYS B 150 VAL B 154 1 N LEU B 152 O ILE B 234 SHEET 4 K 5 HIS B 173 HIS B 178 1 O THR B 175 N VAL B 153 SHEET 5 K 5 TYR B 206 LEU B 208 1 O ARG B 207 N LEU B 176 SHEET 1 L 3 ILE B 212 ASN B 216 0 SHEET 2 L 3 GLU B 219 PHE B 222 -1 O THR B 221 N ASN B 213 SHEET 3 L 3 VAL B 227 HIS B 229 -1 O GLU B 228 N ILE B 220 SHEET 1 M 3 ILE B 259 PRO B 260 0 SHEET 2 M 3 ALA B 279 HIS B 282 1 O THR B 280 N ILE B 259 SHEET 3 M 3 PRO B 289 ALA B 290 -1 O ALA B 290 N SER B 281 SHEET 1 N 5 ASN B 324 PHE B 328 0 SHEET 2 N 5 TYR B 331 GLY B 337 -1 O TYR B 331 N PHE B 328 SHEET 3 N 5 ILE B 381 GLY B 388 -1 O ALA B 386 N ALA B 334 SHEET 4 N 5 PRO B 367 ASP B 375 -1 N TYR B 373 O LEU B 382 SHEET 5 N 5 TYR B 348 GLY B 356 -1 N GLN B 355 O LEU B 368
LINK S1P COA A 441 SG CYS A 43 1555 1555 2.13 LINK S1P COA B 442 SG CYS B 43 1555 1555 2.12 LINK MG MG A2002 O HOH A3433 1555 1555 2.01 LINK MG MG A2002 O HOH A3546 1555 1555 2.09 LINK MG MG A2002 O HOH A3439 1555 1555 2.01 LINK MG MG A2002 O HOH A3313 1555 1555 2.11 LINK MG MG A2002 O HOH A3416 1555 1555 1.94 LINK MG MG B2001 O HOH B3075 1555 1555 2.09 LINK MG MG B2001 O HOH B3110 1555 1555 2.15 LINK MG MG B2001 O HOH B3133 1555 1555 1.97 LINK MG MG B2003 O HOH B3183 1555 1555 2.00 LINK MG MG B2003 O HOH A3371 1555 1555 1.93 LINK MG MG B2003 O HOH A3188 1555 1555 2.00 LINK MG MG B2003 O HOH A3601 1555 1555 2.14 LINK MG MG B2003 O HOH B3251 1555 1555 2.13 LINK MG MG B2001 O HOH A3116 1555 1556 2.01 LINK MG MG B2001 O HOH A3072 1555 1556 2.13 LINK MG MG B2001 O HOH A3090 1555 1556 2.02
SITE 1 AC1 6 HOH A3072 HOH A3090 HOH A3116 HOH B3075 SITE 2 AC1 6 HOH B3110 HOH B3133 SITE 1 AC2 5 HOH A3313 HOH A3416 HOH A3433 HOH A3439 SITE 2 AC2 5 HOH A3546 SITE 1 AC3 5 HOH A3188 HOH A3371 HOH A3601 HOH B3183 SITE 2 AC3 5 HOH B3251 SITE 1 AC4 4 TYR A 361 ALA B 41 CYS B 43 COA B 442 SITE 1 AC5 4 ALA A 41 CYS A 43 COA A 441 TYR B 361 SITE 1 AC6 1 HOH A3318 SITE 1 AC7 3 THR B 354 LYS B 436 HOH B3208 SITE 1 AC8 3 ASN A 85 GLU A 87 ARG A 88 SITE 1 AC9 4 HOH A3542 ASN B 85 GLU B 87 ARG B 88 SITE 1 BC1 32 ALA A 14 THR A 15 SER A 18 GLN A 19 SITE 2 BC1 32 ARG A 22 SER A 39 PHE A 40 ASN A 42 SITE 3 BC1 32 CYS A 43 ALA A 61 LYS A 71 ALA A 295 SITE 4 BC1 32 HIS A 299 FAD A 439 CL A3002 HOH A3136 SITE 5 BC1 32 HOH A3171 HOH A3259 HOH A3366 HOH A3371 SITE 6 BC1 32 HOH A3398 HOH A3440 HOH A3485 HOH A3510 SITE 7 BC1 32 HOH A3514 HOH A3523 HOH A3667 HOH A3685 SITE 8 BC1 32 LYS B 427 MET B 432 TYR B 435 LYS B 436 SITE 1 BC2 30 TYR A 419 PRO A 426 LYS A 427 MET A 432 SITE 2 BC2 30 TYR A 435 CL A3001 VAL B 10 ALA B 11 SITE 3 BC2 30 ALA B 14 THR B 15 SER B 18 GLN B 19 SITE 4 BC2 30 ARG B 22 SER B 39 PHE B 40 ASN B 42 SITE 5 BC2 30 CYS B 43 ALA B 61 TYR B 62 ARG B 70 SITE 6 BC2 30 LYS B 71 ALA B 295 HIS B 299 FAD B 440 SITE 7 BC2 30 HOH B3154 HOH B3320 HOH B3408 HOH B3413 SITE 8 BC2 30 HOH B3550 HOH B3631 SITE 1 BC3 39 VAL A 7 GLY A 8 VAL A 10 ALA A 11 SITE 2 BC3 39 GLY A 12 PHE A 32 GLU A 33 LYS A 34 SITE 3 BC3 39 ASP A 35 ASN A 42 CYS A 43 HIS A 79 SITE 4 BC3 39 GLU A 80 VAL A 81 SER A 112 PRO A 113 SITE 5 BC3 39 GLY A 114 ARG A 131 TYR A 158 VAL A 159 SITE 6 BC3 39 PHE A 245 GLY A 276 ASP A 277 PRO A 293 SITE 7 BC3 39 LEU A 294 ALA A 295 COA A 441 HOH A3006 SITE 8 BC3 39 HOH A3007 HOH A3009 HOH A3017 HOH A3019 SITE 9 BC3 39 HOH A3020 HOH A3037 HOH A3047 HOH A3058 SITE 10 BC3 39 TYR B 419 ALA B 420 PRO B 421 SITE 1 BC4 40 TYR A 419 ALA A 420 PRO A 421 VAL B 7 SITE 2 BC4 40 GLY B 8 VAL B 10 ALA B 11 GLY B 12 SITE 3 BC4 40 PHE B 32 GLU B 33 LYS B 34 ASP B 35 SITE 4 BC4 40 ASN B 42 CYS B 43 HIS B 79 GLU B 80 SITE 5 BC4 40 VAL B 81 SER B 112 PRO B 113 GLY B 114 SITE 6 BC4 40 ARG B 131 TYR B 158 ASN B 242 PHE B 245 SITE 7 BC4 40 GLY B 276 ASP B 277 PRO B 293 LEU B 294 SITE 8 BC4 40 ALA B 295 COA B 442 HOH B3007 HOH B3010 SITE 9 BC4 40 HOH B3011 HOH B3023 HOH B3025 HOH B3031 SITE 10 BC4 40 HOH B3034 HOH B3045 HOH B3052 HOH B3321
CRYST1 76.060 65.200 94.490 90.00 104.80 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013148 0.000000 0.003474 0.00000
SCALE2 0.000000 0.015337 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010946 0.00000